Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_1455 |
Symbol | |
ID | 4017764 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 1691036 |
End bp | 1691815 |
Gene Length | 780 bp |
Protein Length | 259 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637955465 |
Product | RNA methyltransferase TrmH, group 1 |
Protein accession | YP_562463 |
Protein GI | 91792812 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0565] rRNA methylase |
TIGRFAM ID | [TIGR00050] RNA methyltransferase, TrmH family, group 1 |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.000119002 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTCAGTA ATATACGTGT CGTTTTAGTT GGAACATCTC ACCCTGGAAA CATAGGCTCT ACTGCCAGAG CGATGAAAAC AATGGGGTTA TCAAACTTAT ACCTTGCTGA GCCTAAGGTT GAACCCGATG GTCAATCCAT TGCGTTATCG GCGGGTGCGA GCGACATTTT AAAACATTTA ACTCGGGTAG ACTCCCTAGC CGAAGCCATT GCAGATTGTA GCTTAGTGAT TGCCACTAGC GCGCGCAGTC GCACCTTAGA TTGGCCTATG CTTGATCCAA GAGAAGCGGG CATTAAATTA ACTGCCGAAG CACTAAATGG CCCTGTTGCT ATCGTGTTTG GCCGTGAAAA TAATGGCTTG AGCAATGAAG AGTTACAAAG CTGTCAATTT CATGTGGCGA TCCCTGCCAA TCCAGAATAC AGTTCATTGA ATTTAGCTCA AGCGGTGCAG ATTATCTGTT ATGAAGCCCG TGTCGCGCAC TTGGCTCAAT TAGCGAAAAT GGATGACTCT GAAGCTGCGC CACAAGCGGC TGCAATCGTA GAAGCAGAAA CTGCCCCTGA AGAGCCACAA GCTTATCCAT TATCGGCAGA TCTTGAGCGC TTCTACACAC ATCTAGAGTC GACGTTGTTA GCCACAGGTT TTGTGATTAA AAACCACCCA GGCCAAATCA TGATGAAATT GAGACGTCTG TTTAGTCGAG CTCGGGTTGA AGAGCAAGAG ATGAATATCC TTCGCGGGAT CTTAACTTCT ATTGATAAAA AAATACCGCC AAAAGAGTAA
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Protein sequence | MLSNIRVVLV GTSHPGNIGS TARAMKTMGL SNLYLAEPKV EPDGQSIALS AGASDILKHL TRVDSLAEAI ADCSLVIATS ARSRTLDWPM LDPREAGIKL TAEALNGPVA IVFGRENNGL SNEELQSCQF HVAIPANPEY SSLNLAQAVQ IICYEARVAH LAQLAKMDDS EAAPQAAAIV EAETAPEEPQ AYPLSADLER FYTHLESTLL ATGFVIKNHP GQIMMKLRRL FSRARVEEQE MNILRGILTS IDKKIPPKE
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