| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1088 |
|---|
| Symbol | |
|---|
| ID | 4017371 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 1246071 |
|---|
| End bp | 1246958 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637955080 |
|---|
| Product | transposase, IS4 |
|---|
| Protein accession | YP_562099 |
|---|
| Protein GI | 91792448 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0000000830574 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAATT TAGTGGATGT ATTTTGTGAT GTCGATGATT TTTGTGCTGT ATTTATGCCG
CAATGGAAAA AACAATGCGT AACAGATGGC ACGCGTAAGC GCCAACGTTC AAGCAGAATG
AGCATGAGCG AAATAATGAC TATTATCATA CTCTTCCATA CATCTCATCA TCGTGACTTC
AAAAATTACT ACACTGGATA TCTTGCTCGT TTTTTCAAAT CTGATTTCCC CCACTTACTC
AGCTATACCC GTTTTCTTGA GCTTATGCCG ACAGCTGTCG TGCCACTATG CAGCTATTTC
TCCAGCATCA GAAGTCTACC TACGGGGATT GAATTCGTCG ATTCGACCAG TGTAAAGGTT
TGCCACAATT TGCGAATTCC ACGACATAAA ACGTTATCTG GCCTTGCTCG CCGCGGAAAA
GGGACCATGG GGTGGTTCTA CGGGTTCAAG CTTCACCTCA TCGTTAACCA TAAGGGAGGG
ATTGTTGCCG CCAAAATTAC TCCAGCCAAT ACCCATGACA CTAAGCCTGT TTCAGGCATG
GTGGTGAATG CTATGGACAA GCTGTATGCG GATAAAGGCT ATATCAGTAA AGCGTTGGCA
AGCGAGCTAC TTGAGCAAGG CGTAACACTA GTAAACAATG TTCGCAAGAA CATGAAAAAG
AAGGTTTTAT CACTGTGGGA TAGGGCAATG CTTTCACGAA GATTTATTAT AGAAACGATC
AATGATCAGC TTAAGAATAT CTCACAAATC GAGCATTCGA GGCATAGAAG TGTGCATGGT
TTTATGCTGA ATATGATTGG CGGTTTAATT GCCTATCAAC TCAAAGAGAG TAAGCCACAA
CTTAATATCA CAGATGTCGA TTTCAATGCG ATTTCTGTTA TGGCTTAA
|
|---|
| Protein sequence | MDNLVDVFCD VDDFCAVFMP QWKKQCVTDG TRKRQRSSRM SMSEIMTIII LFHTSHHRDF
KNYYTGYLAR FFKSDFPHLL SYTRFLELMP TAVVPLCSYF SSIRSLPTGI EFVDSTSVKV
CHNLRIPRHK TLSGLARRGK GTMGWFYGFK LHLIVNHKGG IVAAKITPAN THDTKPVSGM
VVNAMDKLYA DKGYISKALA SELLEQGVTL VNNVRKNMKK KVLSLWDRAM LSRRFIIETI
NDQLKNISQI EHSRHRSVHG FMLNMIGGLI AYQLKESKPQ LNITDVDFNA ISVMA
|
|---|
| |