Gene Sden_1900 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_1900 
Symbol 
ID4018388 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp2230843 
End bp2232858 
Gene Length2016 bp 
Protein Length671 aa 
Translation table11 
GC content48% 
IMG OID637955921 
ProductNADH:flavin oxidoreductase/NADH oxidase 
Protein accessionYP_562906 
Protein GI91793255 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism
[R] General function prediction only 
COG ID[COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases
[COG1902] NADH:flavin oxidoreductases, Old Yellow Enzyme family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000127564 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGTTTC CACATTTATT AGAACCCTTA GATCTAGGCT TTACTCAGTT GAAAAACCGC 
GTGTTGATGG GCTCCATGCA CACGGGCTTA GAAGAAGAAA AGGGCGGCTT TGAGAAACTG
GCAGCATTTT ACAAAGAGCG TGCCCTTGGC GGTGTTGGCC TAATTGTTAC CGGTGGGATC
TCGCCTAATT TTCGTGGCCG CTTAGCCCCC CATGCCAGCC AATTGAGTTT TTCTTGGCAA
GTTAAAAAGC ACAAAATTGT CACTGATGCG GTGCATGATG GCGGCGGAAA AATCTGTATG
CAGATTTTGC ATGCCGGCCG CTATGGCTAT CACCCTTTTA GCCAAGCACC GAGCAAGATT
AAATCCCCTA TCACGCCTTT TACGCCATCG GCCATGTCTG CCCGCCAAGT GCGAGGCACA
ATCAAAGATT ACGCCAGCAG TGCGGCTTTA GCGAAAAAAG CCGGTTATGA CGGTGTCGAA
GTCATGGGCT CTGAAGGCTA CCTTATCAAT CAATTTGTTA GCTCGCGCAC CAACAAACGT
GATGATGAGT GGGGCGGTGA TTTCGCTAAA CGTGCCCGTT TCCCTGTCGA AATTGTTAAT
GCCATTCGAG AGAAAGTCGG CCAAGATTTT ATCATCATTT TCCGTCTGTC TATGCTAGAT
CTTGTTGATA ACGGTTCTAC TTGGGATGAA GTGGTTCAGC TCGCTAAATG GCTCGAGGAG
TCAGGTGTTA GCATAATCAA TACCGGTATT GGCTGGCATG AAGCCAGAGT ACCCACAATT
TCTACCAGTG TGCCAAGAGG CGCTTTTTCT TGGGTGACTG AAAAGCTTAA AAGCGAAGTT
AACTTGCCAC TGATTGCCAC AAACCGCATC AATACCCCAG AAATTGGTGA ATCCATCATC
GCCTCTGGGC AGGCGGACAT GGTCTCTATG GCTCGTCCTT TCTTGGCCGA TCCAGACTTT
GTTAATAAAG CGGCAGCAAA TCAGAGTGAG ATGATAAACA CCTGTATCGG TTGCAATCAG
GCGTGTTTAG ATCACACCTT TGCTCTCAAG CGCGCTACTT GCTTGGTTAA TCCAAGGGCT
TGTTACGAGA CAGAAATAAA CTTCCTGCCA ACCAAAAATA AGAAGCGTAT CGCTGTTATG
GGCGCAGGCC CTGCTGGCAT GGCCTTCTCT GTGTATGCCG CCACTCGCGG CCACGAAGTG
GTATTGTTTG AAGCAAAATC TGAAGTCGGC GGCCAGTTTA ACTTGGCAAG GAAAATTCCA
GGTAAAGAAG AGTTTAATGA AACGATCCGC TACTTTATCA ATCAATTGGC CCTACATAAA
GTAGAGTTAA GGCTCAATAC TCGTTTGGAT GCTAGCGTAT TGGCTACAGA AAAGTTTGAT
GAAGTGGTGA TTTCTTCTGG TGTAGTGCCA AGAGCCATTA ATTTGCCTGG TTTTGATAGC
CCTAAAGTCG TTGATTATCA GCAAGTCTTA AGCGGTCAGG TTGAGATTGG ACAAAAGGTT
GCATTGATTG GCGCTGGCGG CATTGGTTTT GATATGGCGC ACTTCTTGTG TGAGAAAGAG
TCGAGCACCT TGCAACCAGA CAAATGGCTT AAGCAGTGGG GCATAGATAA AAGCTATGAG
CATGCGGGCG GTTTGACTGA AGAAGCCGAG CATCACCCAG GTCGTGAAGT TTACTTATTG
CAGCGCAAAA CCAGTAAAAT AGGTAAAGGC CTTGGGAAAA CTACCGGCTG GATCCACAGG
AGCGTGCTAA AACAGCATCA AGTGAAGACT ATGACTGGGG TCAGCTATGA GAAATTTGAT
GAACAAGGAC TGCACATTAC TATAGATGAC AAGCCACAAA TACTGGCGGT TGATAATGTC
GTTTTGTGTG CAGGCCAAGA GTCTAACCGC ACCTTGTTGG AGGAAATGAA GGCAACGGGA
TTACCTGTGC ACTTGATTGG CGGCGTGGAT GTAGCAGCAG AACTTGATGC TAAGCGGGCC
ATAAGACAGG GCGCCGAGCT TGCCATGGCA CTGTAA
 
Protein sequence
MSFPHLLEPL DLGFTQLKNR VLMGSMHTGL EEEKGGFEKL AAFYKERALG GVGLIVTGGI 
SPNFRGRLAP HASQLSFSWQ VKKHKIVTDA VHDGGGKICM QILHAGRYGY HPFSQAPSKI
KSPITPFTPS AMSARQVRGT IKDYASSAAL AKKAGYDGVE VMGSEGYLIN QFVSSRTNKR
DDEWGGDFAK RARFPVEIVN AIREKVGQDF IIIFRLSMLD LVDNGSTWDE VVQLAKWLEE
SGVSIINTGI GWHEARVPTI STSVPRGAFS WVTEKLKSEV NLPLIATNRI NTPEIGESII
ASGQADMVSM ARPFLADPDF VNKAAANQSE MINTCIGCNQ ACLDHTFALK RATCLVNPRA
CYETEINFLP TKNKKRIAVM GAGPAGMAFS VYAATRGHEV VLFEAKSEVG GQFNLARKIP
GKEEFNETIR YFINQLALHK VELRLNTRLD ASVLATEKFD EVVISSGVVP RAINLPGFDS
PKVVDYQQVL SGQVEIGQKV ALIGAGGIGF DMAHFLCEKE SSTLQPDKWL KQWGIDKSYE
HAGGLTEEAE HHPGREVYLL QRKTSKIGKG LGKTTGWIHR SVLKQHQVKT MTGVSYEKFD
EQGLHITIDD KPQILAVDNV VLCAGQESNR TLLEEMKATG LPVHLIGGVD VAAELDAKRA
IRQGAELAMA L