| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0536 |
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| Symbol | |
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| ID | 4016870 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 604053 |
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| End bp | 606959 |
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| Gene Length | 2907 bp |
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| Protein Length | 968 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637954522 |
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| Product | ATP-dependent helicase HepA |
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| Protein accession | YP_561551 |
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| Protein GI | 91791900 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00420482 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGTTCG CTTTAGGTCA ACGTTGGATA AGTGATACCG AGTCAGAGCT TGGATTAGGC
ACTGTTGTAC AAGTAGAAGG CCGTATGGTC ACGCTACTCT TCCCCGCCAC CGGTGAGAAC
CGTATGTTCT CCCGCGCTGA AGCGCCATTG ACACGTGTTA TTTTCAATCC TAATGATACC
GTTGAAAGCC ATGAAGGCTG GAGTATTACT GTCACTGAAG TGGTAGAGAA AGACCAGCTA
GTGGTCTACC ACGGCACCCA CAGTGAAACG GGAGAAACCG TTAGCCTACG GGAAACACTA
ATCAGCCACA ATATCCGCTT TAATAAGCCC CAAGACAGGT TATTTGCCGG ACAAATTGAT
CGCTTAGACA GATTTGGGAT CCGCTACCAA TGCCAGTTAC TGCGCCATAA ATTAGCCAGC
TCAGATTTAT TGGGATTACA AGGCCCAAGA GTGGGGCTTA TCGCCCACCA GCAGTGGATA
GCCCATGAAG TGGGTCGTCG CTATGCGCCT AGAGTGTTAC TCGCCGATGA AGTCGGCCTA
GGTAAGACCA TAGAAGCCGG CCTTATTATG CATCAGCAGC TGCTGACTGG CCGCGCCGAG
CGCATTTTAG TCATAGTGCC AGATACCCTA CGCCATCAGT GGTTAGTAGA GATGCTGCGC
CGGTTTAATT TACGTTTCTC TGTGTTTGAT GAAGACAGGT GTGTCGAGGC TTATGCCGAT
AACGACAACC CTTTCTACAC AGAGCAGTTA GTCATTTGTT CACTGGAACT ACTGCGTAAG
AAAAAGCGCT TAGATCAAGC CCTCGATGCC GACTGGGACT TACTGGTGGT GGATGAAGCC
CATCATTTAG AGTGGAGCGA AGATGCCCCG AGCCGTGCTT ATCAAGTGGT TGAAGCCTTA
AGTGAAGTAG TGCCTGGAGT ATTATTGCTC ACGGCAACAC CAGATCAATT AGGCCACCAG
AGTCACTTTG CTCGGCTGCG CTTACTGGAC CCCGACAGAT TCTACGACTA CGACGCCTTC
CTAACTGAAG AGCAAGGCTA TCAAGCCGTT GCTGAAGCCG CAGAGGCTTT AAGTGGCGAG
AAGAAGCTCA ATGATAGCGC GATCAACAGC TTAACTGAGT TGTTGTCTGA AAAAGACATC
GCACCTAGCA TACGCTTAAT TCAAGCAAAC GAGGTCGACC CTGAGCAACA ACAGGCGGCT
CGTGATGGCT TATTGCAAGA GCTACTGGAC CGTCATGGCA CGGGCAGAGT CTTATATCGC
AACAGCCGCG CCTCAGTGAA GGGGTTCCCT AAGCGTATTT TCAATCCGCA TCCGCAGGCC
ATGCCGGAAC AATATGTGAC CGCAGAGCGC GTTAATGCCA TGATGAGTGG TAAAAAGACG
CCGCAAGCCA AAGCATTAGA AGCTTTAAGC CCTGAGAAAC TCTATCAAGC CTTTGAAAGT
GACAGCGCTA GCTGGTGGAA GTTTGATACC CGTGTCGACT GGTTGATTGC ATTTTTAAAA
TCCCATCGCA GCAAGAAAGT GCTTATTATC GCCAGCCAAG CGGAAACCGC ACTTAGCCTT
GAAGAAGCGC TGCGCACCCG CGAAGGTATT TTGGCAACCG TATTCCATGA AGGCATGTCC
ATCATAGAGC GTGACAAGGC CGGTGCCTAT TTCGCTCAGG AAGACGCTGG CGCTCAAGCC
CTAATTTGTT CGGAAATTGG CTCTGAAGGA CGTAACTTCC AGTTTGCCAG CCATTTAGTC
TTGTTCGACT TGCCATTAAA TCCAGATTTA TTAGAGCAGC GCATCGGTCG CCTTGACCGT
ATCGGTCAGA AAAATGATAT TCAAATTCAT CTTCCTTACC TTGAAGGCAC TGCCCAAGAA
AGATTAATGC AGTGGTATCA CCATGGCCTC AATGCCTTCG AGCTCACCTG CCCTAGCGGC
CATGTGCTGT TTAACGAATT TGCCGAAGAG TTGACGCAAG TTCTGTGTGA AGACGACGCT
GACGCTATGA CTCAGCTACT GAATCACACT CAGCATAAAT ACAAAGAACT AAAGCAAGCC
ATGGAGAGAG GCCGCGATAA GCTGCTGGAA ATTAACTCCC ACGGTGGTGC CCGCGCTGCG
GCATTAATTG AACGTTTAGC CCAAAAAGAC AATGACACTC ATCTTGTGGG TTCAGTCATT
AGACTGTGGG ACATTATCGG TGTCGATCAA GAAGATAACG GTGAAAACAC CATAGTCTTA
CGCCCCAGTG AGCACATGCT ATTCCCAACT TACCCGGGCC TTCCCGAAGA TGGCGTCACA
GTCACCTTCG ATAGAGAAAC GGCGCTATCT CGAGATGATA TTGCCTTTAT CTCAGAAGAG
CACCCGCTGG TACAGACAGG CTTAGATCTC ATCACTGGCT CTGAAACTGG CACTACTAGC
GTCGCCGTAC TCAAGAATAA AGCATTGCCC GCGGGCACCT TGTTCCTTGA GCTTATCTAC
ATGGCCGATG CTTCTGCGCC GAAATCGAGC CAGTTATATC GTTATCTACC ACCGACACCA
ATCAGGGTAT TGCTTGATAA AAACGGCAAT AACTTGGCCA CCAAAGTGGA CTATAACAAC
TTCGAAAAAC AGCTCAGCGC GGTAAACCGC CACATTGCCA GTAAGCTAGT CAATGCGTCA
CAGCCACTAC TGCACCCCTT GCTAGCAAAA GGACAAGAGC AAGCCCAGCA GGGATTAGAT
GCGCTATTAG TGGATGCCAG AGCATCGATG ACAAGCCAGC TCACCGCTGA ACTTGAACGC
TTAGAAGCAC TGAAAGCGGT TAACCCCAAC ATACGTGAAG AAGAGCTTGA ATATGTGCGT
AACCAGATGG CTGAGCTGAA CGGCTATTTG GATGCCAGTC AGTTACAACT GGATGCTATT
CGAATGGTGC TTGTGAGCCA CGTCTAG
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| Protein sequence | MPFALGQRWI SDTESELGLG TVVQVEGRMV TLLFPATGEN RMFSRAEAPL TRVIFNPNDT
VESHEGWSIT VTEVVEKDQL VVYHGTHSET GETVSLRETL ISHNIRFNKP QDRLFAGQID
RLDRFGIRYQ CQLLRHKLAS SDLLGLQGPR VGLIAHQQWI AHEVGRRYAP RVLLADEVGL
GKTIEAGLIM HQQLLTGRAE RILVIVPDTL RHQWLVEMLR RFNLRFSVFD EDRCVEAYAD
NDNPFYTEQL VICSLELLRK KKRLDQALDA DWDLLVVDEA HHLEWSEDAP SRAYQVVEAL
SEVVPGVLLL TATPDQLGHQ SHFARLRLLD PDRFYDYDAF LTEEQGYQAV AEAAEALSGE
KKLNDSAINS LTELLSEKDI APSIRLIQAN EVDPEQQQAA RDGLLQELLD RHGTGRVLYR
NSRASVKGFP KRIFNPHPQA MPEQYVTAER VNAMMSGKKT PQAKALEALS PEKLYQAFES
DSASWWKFDT RVDWLIAFLK SHRSKKVLII ASQAETALSL EEALRTREGI LATVFHEGMS
IIERDKAGAY FAQEDAGAQA LICSEIGSEG RNFQFASHLV LFDLPLNPDL LEQRIGRLDR
IGQKNDIQIH LPYLEGTAQE RLMQWYHHGL NAFELTCPSG HVLFNEFAEE LTQVLCEDDA
DAMTQLLNHT QHKYKELKQA MERGRDKLLE INSHGGARAA ALIERLAQKD NDTHLVGSVI
RLWDIIGVDQ EDNGENTIVL RPSEHMLFPT YPGLPEDGVT VTFDRETALS RDDIAFISEE
HPLVQTGLDL ITGSETGTTS VAVLKNKALP AGTLFLELIY MADASAPKSS QLYRYLPPTP
IRVLLDKNGN NLATKVDYNN FEKQLSAVNR HIASKLVNAS QPLLHPLLAK GQEQAQQGLD
ALLVDARASM TSQLTAELER LEALKAVNPN IREEELEYVR NQMAELNGYL DASQLQLDAI
RMVLVSHV
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