| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2117 |
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| Symbol | |
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| ID | 4018609 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 2514456 |
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| End bp | 2516294 |
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| Gene Length | 1839 bp |
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| Protein Length | 612 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637956141 |
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| Product | peptidyl-dipeptidase A |
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| Protein accession | YP_563122 |
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| Protein GI | 91793471 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1164] Oligoendopeptidase F |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00000679972 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATTGC CTTTTAAACA GCCATCTCAA ATCGCTTTAG TCGTCTCTGT GGCGCTCGGA
TTAAGCGCAT GCGGCCAGCA AATTAAGCCG GTTGCCACGG CGCCTGCTGT GGATGCGAAG
GCAGCTGCTG AATTTGTCAA TGATGCGGAA GTGAAACTGG AAGCATTGTC CATTGAAGCC
AGCCGCGCCG AGTGGATCTA CAGTAACTTT ATTACCGAAG ACACGGCGGC ACTTTCTGCT
GCCATGGGCG AAAAAACCAC CTCAATGTCT GTTCAGCTAG CAACCCAAGC GGCAACATTT
GCAGGCTTGA AACTTGATCC TGTGGTTGCT CGCAAGCTTA ATTCGCTTCG TAGCAGTTTG
ATTTTGCCGG CGCCGCTGGA TCCTGCTAAA AATGCTGAAC TTGCCAAGAT AAGCTCAGAG
CTCAATGGCC TGTACGGTAA AGGCAAATAC TGTTTTGCCT CTGGCGAATG CATGACTCAA
ACTGAGTTGT CGGCGCTTAT GGCGGAATCC AAAGATCCAC AGCTGTTATT GGAAGCTTGG
CAAGGTTGGC GTCAAATCGC CAAACCTATG CGTTCATTAT TCCAACGTGA AGTAGAATTA
GCTAACGAAG GTGCCCGTGA CTTAGGCTTC GCCGATTTAT CTGAATTGTG GCGCAGCCAG
TACGACATGA AGCCGCAAGA ATTCTCCAAC GAATTAGACC GTCTATGGGG TGAAATTAAG
CCCTTGTACG ATTCGCTGCA TTGTTATGTG CGCGGCGAGC TGAATGAGCA ATACGGCGAT
GAAGTGGCAC CTAAAACAGG CCCAATCCCA GCACACCTCC TAGGTAATAT GTGGGCGCAG
CATTGGGGCA CCATCTACAA TAGTGTTGCA CCAAAAGATG CGGACCCAGG TTTTGATGTC
ACTGAATTAT TAGCTAAAAA TGGCTACGAT GAAGTCAAGA TGGTCAAACA AGCCGAAAGC
TTCTTCACCT CCCTTGGTTT TGATGCATTA CCGGAGACAT TCTGGAGCCG CTCACTGTTT
GTGCAGCCTA AAGATAGAGA TGTGGTGTGT CATGCATCGG CGTGGGATCT GGACAACCAA
GATGATATCC GCATCAAGAT GTGTATCCAG AAAACTGCTG AAGACTTTAC TGTTATTCAC
CATGAACTGG GGCATAACTT CTACCAAAGA GCCTATAAAA ACCAGCCTTA CATTTTTAAA
GGCTCTGCCA ATGATGGTTT CCATGAAGCC ATTGGTGACA CCATAGCACT GTCAATCACA
CCTAAGTACC TGCAGCAAAT TGGCCTGCTT GAGACTGTGC CTGATGCTTC TAAAGACATA
GGCCTCTTGC TGCAACAAGC ATTAAATAAA ATTGCCTTCA TGCCGTTTGG TTTAATGATA
GATCAGTGGC GCTGGCAGGT CTTTAACGGC CAAATTAAGC CTGAAGATTA CAATAAAGCC
TGGTGGGACT TAAGAGAAAA ATACCAAGGT GTTAAAGCCC CTATCGAGCG CACTGAAGCC
GACTTTGACC CAGGTGCTAA ATACCATGTG CCAGGTAACG TACCTTACAC ACGTTATTTC
TTAGCCCATG TGTTGCAGTT CCAGTTCCAT AAAGCCCTTT GTGATATCGC CGGGGACACA
GGTCCTGTGC ATCGCTGCAG TATTTATGGC AACAAAGAAG CCGGCGCTAA GCTTAACCAA
ATGCTAGAAA TGGGTGCCAG CAAGCCTTGG CCAGAAGCGT TAGAAGTGGT CACAGGTACT
CAGCAGATGG ATGCTAAAGC CGTGTTAGAT TACTTTGCGC CGCTGCAAAC TTGGTTAAAC
GAGCAAAACA CGCAAGCCCA ACGTCAATGT GGCTGGTAG
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| Protein sequence | MKLPFKQPSQ IALVVSVALG LSACGQQIKP VATAPAVDAK AAAEFVNDAE VKLEALSIEA
SRAEWIYSNF ITEDTAALSA AMGEKTTSMS VQLATQAATF AGLKLDPVVA RKLNSLRSSL
ILPAPLDPAK NAELAKISSE LNGLYGKGKY CFASGECMTQ TELSALMAES KDPQLLLEAW
QGWRQIAKPM RSLFQREVEL ANEGARDLGF ADLSELWRSQ YDMKPQEFSN ELDRLWGEIK
PLYDSLHCYV RGELNEQYGD EVAPKTGPIP AHLLGNMWAQ HWGTIYNSVA PKDADPGFDV
TELLAKNGYD EVKMVKQAES FFTSLGFDAL PETFWSRSLF VQPKDRDVVC HASAWDLDNQ
DDIRIKMCIQ KTAEDFTVIH HELGHNFYQR AYKNQPYIFK GSANDGFHEA IGDTIALSIT
PKYLQQIGLL ETVPDASKDI GLLLQQALNK IAFMPFGLMI DQWRWQVFNG QIKPEDYNKA
WWDLREKYQG VKAPIERTEA DFDPGAKYHV PGNVPYTRYF LAHVLQFQFH KALCDIAGDT
GPVHRCSIYG NKEAGAKLNQ MLEMGASKPW PEALEVVTGT QQMDAKAVLD YFAPLQTWLN
EQNTQAQRQC GW
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