| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0109 |
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| Symbol | |
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| ID | 4017173 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 120323 |
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| End bp | 121000 |
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| Gene Length | 678 bp |
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| Protein Length | 225 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637954082 |
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| Product | response regulator receiver |
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| Protein accession | YP_561129 |
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| Protein GI | 91791478 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0000000662688 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAAATCT TAATCATTGA AGATGATGCC ACCACACAAA GCTATTTAGT CGAAGGGTTT
GCGGCTCAGA ATATTGCCAC TGACACCGCC TCCGACGGCC AAGAAGGTTT ACACCTTGCT
AGGCACAATA GTTACGATTT AATCGTGTTA GATCGCATGT TGCCAAAGCT TGATGGTTTG
ACCTTGTTAG GCGCCTTACG CAGCAGTGGC AACAGCACCC CAGTGTTGAT CCTCTCGGCG
CTTAACCATG TGGATGAAAG AGTCAAAGGT CTTCGGGCCG GTGGCGATGA TTACATGACT
AAGCCCTTCG CCTTCGCTGA GCTGTTAGTC AGGGTAGAGA AACTGACCCA AAGAAATCAA
GGTATAGCAG CACCGGCTGA ATTGGTTGTC GGTCAGCTCA GAATGGAGTT ATTAACACGA
GTGGTGACCT TAGCTGAGCA TGAACTTATG CTGCAGCCTA AGGAGTTTCA ATTGCTTAAA
TACCTAATGG AACACCCGAA TAAGGTGATT AGTCGTACCT TATTGTTTGA AGCCGTGTGG
GATTATCACT TCGATCCCAG AACCAATGTC ATCGATGTGC ATATTGCTAA GCTCAGACGC
AAGTTTGAGG AAATTGGCTT CCCCGAGATG ATAGAGACAG TCAGAGGAGC CGGTTATCGC
CTCAGCAAAG GGCATTAG
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| Protein sequence | MKILIIEDDA TTQSYLVEGF AAQNIATDTA SDGQEGLHLA RHNSYDLIVL DRMLPKLDGL
TLLGALRSSG NSTPVLILSA LNHVDERVKG LRAGGDDYMT KPFAFAELLV RVEKLTQRNQ
GIAAPAELVV GQLRMELLTR VVTLAEHELM LQPKEFQLLK YLMEHPNKVI SRTLLFEAVW
DYHFDPRTNV IDVHIAKLRR KFEEIGFPEM IETVRGAGYR LSKGH
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