| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1245 |
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| Symbol | |
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| ID | 4017460 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1454531 |
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| End bp | 1456198 |
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| Gene Length | 1668 bp |
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| Protein Length | 555 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637955241 |
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| Product | malate synthase |
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| Protein accession | YP_562254 |
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| Protein GI | 91792603 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG2225] Malate synthase |
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| TIGRFAM ID | [TIGR01344] malate synthase A |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.000965788 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGCAG AACAACTGGT TGCAAAATAC ACTCAGGGCG AGGCTAAGAG CTTATCGTCT
CAGCAAGCTG AAACAGACCC TTCGCCTTTG GCGATTATAG GGCCAGATGT TCAAGGTCAA
GAAGAACTCT TTACACCGGG TGCGTTAGCC TTATTAACCG CCTTAAGCGA GAACTTTGCT
GGCGAGGTGA CTGAGCTGCT GGCTAAGCGA TCTCAGAAAC AGGCACGAAT AGATAAAGGC
GAATTGCCTG ATTTTTTACC AGAAACCCGT GCCATTAGAG ATGGACAATG GTCAATTAGA
GGTATTCCGG CAGATCTCAC CGATCGTAGG GTAGAAATCA CAGGTCCTGT TGACCGTAAG
ATGATCATCA ATGCCCTCAA TGCCAAGGTC AAAGTATTCA TGGCTGATTT TGAAGACTCA
TTGGCACCGA GTTGGCAGAA AGTTATCGAA GGTCAAATTA ACCTGCGTGA TGCTGTGCGG
GGGGATATCA GTTTTACCGC CCCTGATACG GGCAAGCAAT ACAGCTTAGA TCCTGATCCA
GCCGTGCTTA TTTGCCGAGT TCGAGGCCTG CACTTAAAAG AGAAACACGT TGAATATCAA
AGCAACGCAA TCCCCGGTGC TTTATTCGAT TTCGCGCTGT ACTTTTATCA TAACTACCAT
CAATTATTGG CTAAAGGTTC AGGCCCGTAT TTTTATCTTC CAAAACTTGA AAGCCATTTA
GAAGCGCGCT GGTGGGCAAA AGTCTTCGCG TTTGTCGAAG ACAGATTCTG TCTAAAGCCT
GGCACCATTA AATGCACTTG CTTGATTGAA ACTTTACCTG CCGTGTTTGA AATGGATGAA
ATTCTTTATG AATTACGTTC AAACATAGTG GCGCTAAATT GCGGCCGCTG GGATTATATT
TTCAGTTATA TCAAAACGTT AAAAAACCAT GCTGACAAGG TCTTACCAGA CCGTCAAGCC
GTAACCATGG ATACCAAATT CCTAAGTGCT TACTCACGCT TACTGATCAA GACCTGCCAT
AAACGCGACG CCTTAGCCAT GGGCGGTATG GCTGCCTTTA TTCCTGCAAA AGATGAAGCG
ACCAATGCAC AAGTGTTACA AAAAGTGCGC GGCGATAAAG AGCTTGAAGC GCGTAATGGC
CATGATGGCA CTTGGGTTGC CCATCCGGGA CTTGCGGATA CTGCGATGGA AATCTTCAAT
CGATACATAG GTCCAGGTGA GACCAATCAG CTGCATATCA CCCGTGATGT CGATGCGCCA
ATATCGGCCA GTGAATTACT CAGCCCTTGC GATGGCGAAC GTACTGAAAC GGGTATGCGA
CTTAATATTC GTATCGCAGT GCAATATATC GAAGCTTGGA TCCAAGGAAA CGGCTGCGTG
CCTATCTACG GCTTGATGGA AGATGCTGCA ACAGCTGAAA TTTCTCGAAC GTCCATCTGG
CAATGGATTA AGCACGGTAA AAGCCTTTCC AACGGCAAGT TAGTGACCAA AGAATTGTTC
AACAGCATGC TTAAAGAAGA ATTAGTCACA GTAAAACAAG AATTGGGCAG TGAACGGTTT
AATAGTGGCC AATTTGCCAA AGCCGCTGAG CTATTCACCA GTATTACCAC GGCCGATGAG
CTAGTTGATT TCTTAACCTT ACCGGGTTAC GAGCTGTTAA CAGCTTAA
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| Protein sequence | MTAEQLVAKY TQGEAKSLSS QQAETDPSPL AIIGPDVQGQ EELFTPGALA LLTALSENFA
GEVTELLAKR SQKQARIDKG ELPDFLPETR AIRDGQWSIR GIPADLTDRR VEITGPVDRK
MIINALNAKV KVFMADFEDS LAPSWQKVIE GQINLRDAVR GDISFTAPDT GKQYSLDPDP
AVLICRVRGL HLKEKHVEYQ SNAIPGALFD FALYFYHNYH QLLAKGSGPY FYLPKLESHL
EARWWAKVFA FVEDRFCLKP GTIKCTCLIE TLPAVFEMDE ILYELRSNIV ALNCGRWDYI
FSYIKTLKNH ADKVLPDRQA VTMDTKFLSA YSRLLIKTCH KRDALAMGGM AAFIPAKDEA
TNAQVLQKVR GDKELEARNG HDGTWVAHPG LADTAMEIFN RYIGPGETNQ LHITRDVDAP
ISASELLSPC DGERTETGMR LNIRIAVQYI EAWIQGNGCV PIYGLMEDAA TAEISRTSIW
QWIKHGKSLS NGKLVTKELF NSMLKEELVT VKQELGSERF NSGQFAKAAE LFTSITTADE
LVDFLTLPGY ELLTA
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