| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2220 |
|---|
| Symbol | |
|---|
| ID | 4018712 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 2636787 |
|---|
| End bp | 2638937 |
|---|
| Gene Length | 2151 bp |
|---|
| Protein Length | 716 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637956242 |
|---|
| Product | FMN-binding |
|---|
| Protein accession | YP_563223 |
|---|
| Protein GI | 91793572 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG3901] Regulator of nitric oxide reductase transcription |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000053417 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGGAG GCAGGGTGCT GTTGGTGAAC GTGAATCTTA ACAATATCAA AAGTTTAATT
TTATTCCTGA GTCTGTTGTT AGGGATGGCT TTCCCTGCTG CGGCATTATT TGTCAGCCCC
GCAAAACCCG CCATGCCTGA AATTCAAGCG CTATTCCCCA CTGCCAGTAG CATAAGTGAA
AAACAAGGTG AGCCTGCTAT TTGGACGGTT CATCAAGGTG AGGAGGTGTT AGGTTATGCC
TTTGAAACCA ATGATATCGC TAAAATTCCG GCTTACTCTG GCGAGCCTGT CAACATGCTG
GTGGCTATAG ATGCCAAAGG GCAATACTTA GGCGCTAAGG TGCTCGAGCA TCACGAACCC
ATTATTTTGG CGGGCATTCC AGAAACTAAA CTGTGGAAAT TTACCGACCA ATACCAAGGG
CTTAATGTAA AAGACAGGAT CAAGGTTGGC GGCAATGCCA GCCAAGGCAC CATAGCCATA
GACGGCTTAT CGGGCGCGAC TGTGACTGTA ATGGTGATGA ATGTCGCTAT TACTAAGGCG
GCCACTAAGG TGGCGCAATC CTTGGGGCTA ATTGAAATTA AAAAAGGCAT TATTCAGCCT
CTTTCAACCA TTAAGCCTGA CGTATTTGCT AAAGCTGATT GGCAGACCCT CACAGGCGAT
GGCTCGATTC GTAAACTCTA TTTAAAGCGT GCCGTGGTGG ATGATGCCTT TATGGGCACA
GAGGCTGAAC ACGTAGATGA AGCCAGCGCG TCGCAAAAAC AAGACATGTT TGCCGAAATC
TATTACGCCT TATTGGATGT ACCAACTATA GGTAAAAACT TACTCAGTGA GGCGGATAAC
GCTTGGCTTG TTGACCCACT CGTTAAGGGC GAGCATTTAT TGGTCCTCAT GGGCAATGGC
TACTCTTTTA AGGGCTCGGG TTATGTGCGC GGCGGTATTT TTGACCGTAT TCAGCTGCAC
CAAGGGGATG AGGCCATCTC GTTTCGCGAT CTCGAACACA ATCGTTTAAC GGATCTTGCC
ATCGAAGCTG CGCCGCATTT TGCGGAAATG TCGGTGTTTC GCATCCAGGC GCATTATGAG
TTTGACCCAG GTGCACCTTG GCAATTAGAG CTGTTAGTGC GCCGGCAAAC GGGTCCTATC
GATAGCCTAT TCACAAGCTT TAAGGGCGAA TACCAGATGT TGCCCAAGTA TGTGGATACG
CCAGCGGCGA TCATACCTGA GCCAGAACGC AGCTTAATTG AGCAAGTGTG GTTTGAGAAA
CGCTATGAAG TGATAGCGCT CAGCATAATG ATCACTGTGT TGCTGTTGAT CTTATTCTTC
CAAGATGTAT TAGTGCGTCA CCCCACCTTT ATTCATAACC TGCGCCATGG TTTTTTGATT
GCCACTGTGG TGCTAGTGGG CTGGACTTGG GGCGGGCAGT TGTCGGTAGT GAATGTGTTT
ACCTTCTTGC AATCTTTAAT GGGTAACTTC TCCTGGGATT TATTCATGCT TGACCCGATT
ATTTTTATTC TTTGGGCGGC GGTGGCAGTG ACCATTTTAC TCTGGGGCAG GGCTGTGTAC
TGCGGCTGGT TATGCCCCTT TGGCGCGCTG CAGGAACTGG TCAATCAGTT CGCCCGTTTT
GTAAAAATCC CCCAATTTGA ATTGCCCTTT GCGGTGCATG AACGTCTTTG GGCGATTAAA
TATTTAATTC TATTAGTACT GTTTGGTGTG TCCCTCGATT CGCTGGCCAT GGCGGAGAAA
TTGGCTGAAA TTGAGCCGTT CAAGACCACC TTCTTACTTA AATTTGACCG CGAGTGGCCC
TTTGTCCTCT GGGCAAGCTT TTTGATTTTA CTTAATTTAG TCAACCGCAA AACCTTCTGT
CGTTATTTGT GCCCACTGGG GGCTGCGCTT TCGGTAAGCA ACAGTGCTCG CTTGTTTAAT
TGGCTTAAGC GCCGTGAAGA GTGCGGCACG CCTTGTAAAA CCTGCGCCAC AGAGTGTGAA
ATTCAAGCTA TTGAACCTAA TGGGGTGATC AACATGCGTG AATGCCATTA CTGCCTCGAT
TGCCAAATTA CTTATTTTAA CGATGAAAAA TGTCCGCCAC TTAAAAAGCT GGCTTACAAG
AAAAACAAAT ACAAAGAGCA TCAAATTGAT GCGGTCAATG TGGCCAGTTA A
|
|---|
| Protein sequence | MLGGRVLLVN VNLNNIKSLI LFLSLLLGMA FPAAALFVSP AKPAMPEIQA LFPTASSISE
KQGEPAIWTV HQGEEVLGYA FETNDIAKIP AYSGEPVNML VAIDAKGQYL GAKVLEHHEP
IILAGIPETK LWKFTDQYQG LNVKDRIKVG GNASQGTIAI DGLSGATVTV MVMNVAITKA
ATKVAQSLGL IEIKKGIIQP LSTIKPDVFA KADWQTLTGD GSIRKLYLKR AVVDDAFMGT
EAEHVDEASA SQKQDMFAEI YYALLDVPTI GKNLLSEADN AWLVDPLVKG EHLLVLMGNG
YSFKGSGYVR GGIFDRIQLH QGDEAISFRD LEHNRLTDLA IEAAPHFAEM SVFRIQAHYE
FDPGAPWQLE LLVRRQTGPI DSLFTSFKGE YQMLPKYVDT PAAIIPEPER SLIEQVWFEK
RYEVIALSIM ITVLLLILFF QDVLVRHPTF IHNLRHGFLI ATVVLVGWTW GGQLSVVNVF
TFLQSLMGNF SWDLFMLDPI IFILWAAVAV TILLWGRAVY CGWLCPFGAL QELVNQFARF
VKIPQFELPF AVHERLWAIK YLILLVLFGV SLDSLAMAEK LAEIEPFKTT FLLKFDREWP
FVLWASFLIL LNLVNRKTFC RYLCPLGAAL SVSNSARLFN WLKRREECGT PCKTCATECE
IQAIEPNGVI NMRECHYCLD CQITYFNDEK CPPLKKLAYK KNKYKEHQID AVNVAS
|
|---|
| |