| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0120 |
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| Symbol | |
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| ID | 4017204 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 130359 |
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| End bp | 131270 |
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| Gene Length | 912 bp |
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| Protein Length | 303 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637954093 |
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| Product | type II secretion system protein C |
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| Protein accession | YP_561140 |
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| Protein GI | 91791489 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3031] Type II secretory pathway, component PulC |
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| TIGRFAM ID | [TIGR01713] general secretion pathway protein C |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0000735781 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGATGTAT TAGATAACTT ATTAGCAAAA GCCGCCAGAA TACCTCATAA GCAACTGAGT
TTGTTTGTTT TTTGGTTTTT ATTTGTGATT GTGTCATTAC TGGCAGCACA AGTTACATGG
AAGTTAATAC CTGCCAATGC GCCGCTTGCA ACATGGCAGG CGTCAGCTAT TGCTTCAACT
ACCGCAAAGT CGATTAACCT TCAAGGTGTG CATAATTTAC ATTTATTTGG CAATCATGAT
GCCAGCCAAG TGAGTCGGGC CCCAGTGGTT GAAACCATAA CCGACGCCCC TAAGACCAGC
TTATCAATTT TGTTGACAGG CGTTGTCGCG TCGACAACAG AGACTCAAGG TTTAGCCGTC
ATCGATTCTC GCGGCGTACA AGATACCTAT AGCCTAGGGG ATAAAATCAG TGGGACGTCG
GCCTCATTAA AAGAGGTGTA TGCGGATCGC ATTATTATCA CTAATGCGGG TCGTTATGAA
ACCTTGATGC TAGACGGCCT GCCTTACACA ACCAATGGGC AAGTTAATCA GCAATTACAG
CAGGCCAAGC AAAGCCAAGA CGTGTCTCGG GTCGATCAAC GCAATAATCA GCAAGTCTCA
CAGGAATTAC GCCAATCCCG TGATGAGTTA TTGGCAGACC CAAGCAAAAT TACAGACTTC
TTAGCCATTT CGCCAGTGCG AAATGGTGAC TCACTCGCGG GTTATCGCCT CAATGCTGGC
AGAGATGCCG CCTTGTTTAA GCAGGCGGGT TTTCAGGCTA ATGACTTAGC CAAATCAATT
AATGGATTTG ATCTGACCGA AATGAGTCAG GCATTAGAAG TGATGGCCGG ATTATCTGAG
TTGACCGAAA TCGCAGTCAT GGTTGAGCGC GATGGGCAGC TGGTCGAAAT CATGTTTAGT
TTGCCAGAAT AA
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| Protein sequence | MDVLDNLLAK AARIPHKQLS LFVFWFLFVI VSLLAAQVTW KLIPANAPLA TWQASAIAST
TAKSINLQGV HNLHLFGNHD ASQVSRAPVV ETITDAPKTS LSILLTGVVA STTETQGLAV
IDSRGVQDTY SLGDKISGTS ASLKEVYADR IIITNAGRYE TLMLDGLPYT TNGQVNQQLQ
QAKQSQDVSR VDQRNNQQVS QELRQSRDEL LADPSKITDF LAISPVRNGD SLAGYRLNAG
RDAALFKQAG FQANDLAKSI NGFDLTEMSQ ALEVMAGLSE LTEIAVMVER DGQLVEIMFS
LPE
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