Gene Sden_0992 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_0992 
Symbol 
ID4017589 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp1129560 
End bp1130378 
Gene Length819 bp 
Protein Length272 aa 
Translation table11 
GC content49% 
IMG OID637954982 
Productpeptidase M48, Ste24p 
Protein accessionYP_562003 
Protein GI91792352 
COG category[R] General function prediction only 
COG ID[COG4783] Putative Zn-dependent protease, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000000166595 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACCCA TTATCGCCAA TTCCCTATTA AGTCTATTCG CTGCAACTGT TCTCAGTGCC 
TGTGTGAGTA CTCAATCACC CACAGGTCGC AGTCAGACCC TGTTGTTTTC TGAAGCTCAA
ATGCAAAAAA TGGGCGCCGA ATCTTTTGCC TCTATGAAGC AAGAGCAGAA AGTCAGTAAA
GATAAAGCCT TAACCACTTA TGTTAATTGT GTCGCTAAGC GGATAACGGA TGTGTTGCCG
GGCGAGGCTA AACCTTGGGA GCTAGTCTTG TTTGAATCTG ATCAAGTGAA TGCCTTCGCG
GTCCCTGGTG GTTTTATCGG GGTTTACACG GGTTTATTGA ATGTAGCTAA CACTCAAGAT
CAATTAGCCA CAGTCTTAGG CCATGAAGTC GCCCACGTGT TAGCTCATCA TGGTAATGAA
CAAGTGTCCC GTGCACAGAT GACGGGGTTA GGCATACAGC TTGCGGATGT TGCCCTTGGC
GCTGGCGGCG TATCTAATAA AGACTTATAT ATGCAAGCCC TAGGATTAGG GGCCAAGGTA
GGTTACATCT TGCCCTTTGG TCGAACCCAA GAAAGTGAAG CGGATGTCAT GGGGCTTGAG
TTGATGGCCA AGGCTGGATT TGATCCTAGC CAGAGCATCA CGCTTTGGCA GAACATGGCT
AAAGCCGGTG GGGCTCAGGG GCCTGAATTG CTTTCGACTC ATCCGTCCAA TGAGCGCCGT
ATTCAAGACT TGCAAGGATT ACAAGGGCGT GTGGCGCCGC TGTATCTCGC AGCCCGTGAA
ACCCAATTGG CCAAATGCAT TCAGCCTGGT AAAAAATAG
 
Protein sequence
MKPIIANSLL SLFAATVLSA CVSTQSPTGR SQTLLFSEAQ MQKMGAESFA SMKQEQKVSK 
DKALTTYVNC VAKRITDVLP GEAKPWELVL FESDQVNAFA VPGGFIGVYT GLLNVANTQD
QLATVLGHEV AHVLAHHGNE QVSRAQMTGL GIQLADVALG AGGVSNKDLY MQALGLGAKV
GYILPFGRTQ ESEADVMGLE LMAKAGFDPS QSITLWQNMA KAGGAQGPEL LSTHPSNERR
IQDLQGLQGR VAPLYLAARE TQLAKCIQPG KK