Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_1737 |
Symbol | |
ID | 4018215 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 2051771 |
End bp | 2052853 |
Gene Length | 1083 bp |
Protein Length | 360 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637955750 |
Product | secretion protein HlyD |
Protein accession | YP_562744 |
Protein GI | 91793093 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000000190652 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAAA TATTTCTCCT GATTGCCCTA TTGGCATTGG CTTGGTTTGG TTATCAAGCC AGCCTAAGTC CTGAAATTAC CGCCACTAAA CCCCGTCCTT TAGCCAATGT GGTGGTGGCC AAAGCAGCCA TGCAAACCGT GCGTGATGAA GTGGAAGCCA TAGGCACAAG TAAGGCATTT GATTCTGTGA CTATCACAGC CAAAATCTCA GAGTTGATTT CTAGTGTTAA TATTCGTGAC GGCCAGAATG TACAGAAGGG CGACTTATTG GTGCAATTGC AAAATACTGA GCAGTTGGCC AAAGTCAGGG TTGCCGAGGT CAAGCTTGCG GAGCATCAGA GGGAGTTTGC CAGGATCCGC AGCCTAGTGA GCAATAAGAC CATTGCTGAA AATGAACAAG ACAGATTGCA AACCCTGATT GACACTACTA AAGCCGAATT GGCTCAAGCG GGTTCTGCCT TAGGTGACAG AGCAATCACA GCGCCATTTT CAGGCCGCCT TGGCTTAATT CAAGTCAGTG TTGGTAGCCT TGTAACCCCA GGACAGCAAA TCACCACCTT AGATGATGTG AGCCAAATCA AATTAGATTT TTCCGTACCT GAGCGTTTTA TCAATGAAAT TCAAGTGGGC AAACAAGTTG AAGCCAAGGC GGTTGCTTTT CCCGGAAGAC TATTTAATGG CAAGGTTACC TCTATCGATA GCAGAGTGAA TCCCACCACG CGCGCCTTGA CGGTTCGCGC TATCATTCCG AATACGGATT TTGCCCTGTT ACCTGGTATG TTAATGAAGG TGAAACTGAT TAAACAAAGC CGCGAAGCCT TATTATTGCC AGAATCAGCC ATCATTCCTA TCCAGTCATC CCATTATATT TACACCTTAG ATGCTGATAA CAAGGTGGTG CGTCAACAAG TCACCTTAGG AACACGCACC CGAGGTTGGG TGGAGATTGT CGAGGGAGTC GAGCTCGACC AAGCTGTGAT CATTCGTGGT ATCTTAAAAG TGCGCCCTGG GGATGAAGTG CAGGTAGAAT TGCAAGAGAG ATTTAAGTTC GCCATCCAAA GCACAGAGGA TACTCTGCTA TGA
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Protein sequence | MKKIFLLIAL LALAWFGYQA SLSPEITATK PRPLANVVVA KAAMQTVRDE VEAIGTSKAF DSVTITAKIS ELISSVNIRD GQNVQKGDLL VQLQNTEQLA KVRVAEVKLA EHQREFARIR SLVSNKTIAE NEQDRLQTLI DTTKAELAQA GSALGDRAIT APFSGRLGLI QVSVGSLVTP GQQITTLDDV SQIKLDFSVP ERFINEIQVG KQVEAKAVAF PGRLFNGKVT SIDSRVNPTT RALTVRAIIP NTDFALLPGM LMKVKLIKQS REALLLPESA IIPIQSSHYI YTLDADNKVV RQQVTLGTRT RGWVEIVEGV ELDQAVIIRG ILKVRPGDEV QVELQERFKF AIQSTEDTLL
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