Gene Sden_2116 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_2116 
Symbol 
ID4018608 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand- 
Start bp2513621 
End bp2514265 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content44% 
IMG OID637956140 
Productregulatory protein, TetR 
Protein accessionYP_563121 
Protein GI91793470 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones3 
Plasmid unclonability p-value0.0000000093152 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGTGAGA GGATGGCGAG TCGGACAGAT ACAAAAACCA GAATTCTGGA TGCAGCAGAA 
AAACTCTTCG CAGAAAGGGG ATTTTCTGAA ACTTCCTTAA GGCTTATCAC CAGTAAGGCT 
GAAGTGAATT TGGCCTCGGT AAATTACCAT TTTGGCTCGA AGAAAGAACT GATCCGCGCT 
GTGTTGGCAC GCTATTTAGA TGTGTTTATG CCATCGGCTG CCAGTGAGAT TAAACGTTTG 
AATAAAGCGT CAGAGCAGGC GAGTTTGAAC GAAATTTTCT CCTCATTAAT TAAACCTTTA 
CTAGAATTAA ATAAGGTGAG AAACGGTGGC ACCATTATTT TCTTGCAGCT ACTAGGCCGG 
GGTTACATAG AAAGCCAAGG TCATCTGCGC TGGTTTATCA CCACACATTA TGGTGAGCAT 
CTGGCCGCAT TTGTACAAGC TGTGAAGATG AGTGCCCCCC ATATTCCAGC AGCAGAGATG 
TTTTGGCGGC TGCATTTCAC CTTAGGCACT ATAGTCTTTA CCATGGCTTC AGCGGATGCA 
TTAAATGATA TTGCCGCCAC TGAATACGGT GAACATAACA ATATTGAAGC GATAATTCGC 
AAAGTGATCC CTTACATGGC TGCTGGCGTG TCAGTGGCGA TTTAA
 
Protein sequence
MGERMASRTD TKTRILDAAE KLFAERGFSE TSLRLITSKA EVNLASVNYH FGSKKELIRA 
VLARYLDVFM PSAASEIKRL NKASEQASLN EIFSSLIKPL LELNKVRNGG TIIFLQLLGR 
GYIESQGHLR WFITTHYGEH LAAFVQAVKM SAPHIPAAEM FWRLHFTLGT IVFTMASADA 
LNDIAATEYG EHNNIEAIIR KVIPYMAAGV SVAI