More than 300 homologs were found in PanDaTox collection
for query gene TM1040_0828 on replicon NC_008044
Organism: Ruegeria sp. TM1040



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_008044  TM1040_0828  two component LuxR family transcriptional regulator  100 
 
 		 204 aa  414  9.999999999999999e-116  Ruegeria sp. TM1040  Bacteria  hitchhiker  0.00513824  normal  0.360671 
 
 
-
 
NC_008044  TM1040_0960  two component LuxR family transcriptional regulator  59.8 
 
 		 214 aa  263  1e-69  Ruegeria sp. TM1040  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009952  Dshi_1894  putative response regulator receiver protein  51.96 
 
 		 204 aa  223  2e-57  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.761861  normal  0.0769356 
 
 
-
 
NC_009430  Rsph17025_4184  hypothetical protein  43.37 
 
 		 207 aa  162  3e-39  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.400045  normal  0.380291 
 
 
-
 
NC_007493  RSP_0087  two component transcriptional regulator, LuxR  39.81 
 
 		 210 aa  148  6e-35  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.197031  n/a   
 
 
-
 
NC_009049  Rsph17029_1723  two component LuxR family transcriptional regulator  39.81 
 
 		 240 aa  147  1.0000000000000001e-34  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009428  Rsph17025_1676  two component LuxR family transcriptional regulator  39.32 
 
 		 210 aa  147  1.0000000000000001e-34  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.123322  normal  1 
 
 
-
 
NC_008347  Mmar10_2744  two component LuxR family transcriptional regulator  36.1 
 
 		 201 aa  131  9e-30  Maricaulis maris MCS10  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009430  Rsph17025_4179  hypothetical protein  35.29 
 
 		 232 aa  120  9.999999999999999e-27  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  0.365276 
 
 
-
 
NC_007489  RSP_4131  two component LuxR family transcriptional regulator  33.33 
 
 		 220 aa  119  1.9999999999999998e-26  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007509  Bcep18194_C7667  two component LuxR family transcriptional regulator  34.27 
 
 		 209 aa  113  2.0000000000000002e-24  Burkholderia sp. 383  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007489  RSP_4133  two component LuxR family transcriptional regulator  34.69 
 
 		 240 aa  112  3e-24  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009720  Xaut_0991  two component LuxR family transcriptional regulator  34.43 
 
 		 210 aa  111  6e-24  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007643  Rru_A3229  two component LuxR family transcriptional regulator  33.78 
 
 		 224 aa  110  1.0000000000000001e-23  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_010086  Bmul_3716  two component LuxR family transcriptional regulator  35.07 
 
 		 209 aa  110  1.0000000000000001e-23  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.576881  normal  0.099275 
 
 
-
 
NC_009767  Rcas_1355  two component LuxR family transcriptional regulator  35.24 
 
 		 230 aa  108  5e-23  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009523  RoseRS_4275  two component LuxR family transcriptional regulator  35.55 
 
 		 226 aa  106  2e-22  Roseiflexus sp. RS-1  Bacteria  normal  0.798613  normal  0.287125 
 
 
-
 
NC_009720  Xaut_1450  two component LuxR family transcriptional regulator  33.8 
 
 		 224 aa  105  4e-22  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008025  Dgeo_0555  two component LuxR family transcriptional regulator  33.01 
 
 		 228 aa  103  1e-21  Deinococcus geothermalis DSM 11300  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010725  Mpop_4737  two component transcriptional regulator, LuxR family  34.5 
 
 		 241 aa  104  1e-21  Methylobacterium populi BJ001  Bacteria  normal  1  normal  0.0133592 
 
 
-
 
NC_007952  Bxe_B1813  two component LuxR family transcriptional regulator  31.65 
 
 		 249 aa  103  2e-21  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  0.172477 
 
 
-
 
NC_008228  Patl_4028  two component LuxR family transcriptional regulator  33.18 
 
 		 212 aa  103  2e-21  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_009654  Mmwyl1_3005  two component LuxR family transcriptional regulator  34.6 
 
 		 217 aa  102  4e-21  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00815247  normal  1 
 
 
-
 
NC_007912  Sde_1571  XRE family transcriptional regulator  29.78 
 
 		 227 aa  102  6e-21  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010001  Cphy_3936  two component LuxR family transcriptional regulator  33 
 
 		 213 aa  101  6e-21  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00507176  n/a   
 
 
-
 
NC_007908  Rfer_2039  two component LuxR family transcriptional regulator  36.27 
 
 		 212 aa  101  7e-21  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_013947  Snas_3745  two component transcriptional regulator, LuxR family  33.65 
 
 		 235 aa  101  7e-21  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.627677  normal  0.255424 
 
 
-
 
NC_007298  Daro_0264  two component LuxR family transcriptional regulator  33.18 
 
 		 221 aa  101  8e-21  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010623  Bphy_5117  two component LuxR family transcriptional regulator  30.17 
 
 		 253 aa  101  9e-21  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.180541 
 
 
-
 
NC_011901  Tgr7_2171  two component transcriptional regulator, LuxR family  32.86 
 
 		 227 aa  100  2e-20  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  1  n/a   
 
 
-
 
NC_008148  Rxyl_2613  two component LuxR family transcriptional regulator  33.65 
 
 		 207 aa  100  2e-20  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_010505  Mrad2831_2408  two component LuxR family transcriptional regulator  34.45 
 
 		 219 aa  100  2e-20  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0426941  normal  0.882432 
 
 
-
 
NC_009952  Dshi_0465  two component transcriptional regulator  30.92 
 
 		 239 aa  100  2e-20  Dinoroseobacter shibae DFL 12  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  30.77 
 
 		 216 aa  100  2e-20  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_011830  Dhaf_2789  two component transcriptional regulator, LuxR family  30.73 
 
 		 212 aa  99.8  3e-20  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.246733  n/a   
 
 
-
 
NC_013521  Sked_03860  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  32.35 
 
 		 204 aa  99.8  3e-20  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.0649288  normal  0.281143 
 
 
-
 
NC_010524  Lcho_1574  two component LuxR family transcriptional regulator  31.53 
 
 		 219 aa  99  4e-20  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.347453 
 
 
-
 
NC_009485  BBta_0852  two component LuxR family transcriptional regulator  33.97 
 
 		 224 aa  99  5e-20  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.852842  normal  0.596615 
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  34.47 
 
 		 211 aa  98.6  5e-20  Halothermothrix orenii H 168  Bacteria  normal  1  n/a   
 
 
-
 
NC_012791  Vapar_0555  two component transcriptional regulator, LuxR family  31.7 
 
 		 227 aa  98.6  5e-20  Variovorax paradoxus S110  Bacteria  normal  0.401942  n/a   
 
 
-
 
NC_012669  Bcav_1588  two component transcriptional regulator, LuxR family  32.84 
 
 		 201 aa  97.8  8e-20  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.117504  normal  1 
 
 
-
 
NC_010320  Teth514_2042  two component LuxR family transcriptional regulator  31.31 
 
 		 208 aa  97.8  1e-19  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
-
 
NC_013552  DhcVS_601  DNA-binding response regulator, LuxR family  32.39 
 
 		 224 aa  96.7  2e-19  Dehalococcoides sp. VS  Bacteria  normal  1  n/a   
 
 
-
 
NC_007404  Tbd_2570  two component LuxR family transcriptional regulator  31.55 
 
 		 224 aa  96.3  2e-19  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.282998  normal  0.225314 
 
 
-
 
NC_013093  Amir_1617  two component transcriptional regulator, LuxR family  34.45 
 
 		 214 aa  96.7  2e-19  Actinosynnema mirum DSM 43827  Bacteria  normal  0.321528  n/a   
 
 
-
 
NC_009439  Pmen_2668  two component LuxR family transcriptional regulator  32.68 
 
 		 213 aa  97.1  2e-19  Pseudomonas mendocina ymp  Bacteria  normal  0.18046  normal  1 
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  32.35 
 
 		 220 aa  97.1  2e-19  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_010571  Oter_1284  two component LuxR family transcriptional regulator  31.37 
 
 		 209 aa  97.1  2e-19  Opitutus terrae PB90-1  Bacteria  normal  0.479266  normal  1 
 
 
-
 
NC_009664  Krad_1998  two component transcriptional regulator, LuxR family  32.73 
 
 		 225 aa  97.1  2e-19  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.12496  normal  1 
 
 
-
 
NC_013169  Ksed_00990  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  33.99 
 
 		 201 aa  96.7  2e-19  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.666199  normal  1 
 
 
-
 
NC_002947  PP_2665  LuxR family two component transcriptional regulator  33.49 
 
 		 221 aa  95.9  3e-19  Pseudomonas putida KT2440  Bacteria  normal  0.107491  normal  1 
 
 
-
 
NC_010571  Oter_3372  two component LuxR family transcriptional regulator  33.01 
 
 		 212 aa  96.3  3e-19  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.383896 
 
 
-
 
NC_010506  Swoo_4591  two component LuxR family transcriptional regulator  33.33 
 
 		 198 aa  96.3  3e-19  Shewanella woodyi ATCC 51908  Bacteria  normal  1  unclonable  0.00000001788 
 
 
-
 
NC_008825  Mpe_A1151  two-component response regulator  33.77 
 
 		 248 aa  96.3  3e-19  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010506  Swoo_2721  two component LuxR family transcriptional regulator  32.04 
 
 		 219 aa  96.3  3e-19  Shewanella woodyi ATCC 51908  Bacteria  normal  1  hitchhiker  0.001499 
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  32.42 
 
 		 222 aa  95.9  4e-19  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal  1 
 
 
-
 
NC_010571  Oter_2496  two component LuxR family transcriptional regulator  34.45 
 
 		 212 aa  95.5  4e-19  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.996792 
 
 
-
 
NC_011884  Cyan7425_1929  two component transcriptional regulator, LuxR family  32.52 
 
 		 209 aa  95.9  4e-19  Cyanothece sp. PCC 7425  Bacteria  normal  0.142226  normal  1 
 
 
-
 
NC_009972  Haur_4485  two component LuxR family transcriptional regulator  31.58 
 
 		 213 aa  95.9  4e-19  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.310872  n/a   
 
 
-
 
NC_008254  Meso_0341  two component LuxR family transcriptional regulator  33.96 
 
 		 216 aa  95.5  5e-19  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009511  Swit_0694  two component LuxR family transcriptional regulator  30.24 
 
 		 252 aa  95.5  5e-19  Sphingomonas wittichii RW1  Bacteria  normal  0.770061  normal  0.351457 
 
 
-
 
NC_008576  Mmc1_2093  two component LuxR family transcriptional regulator  32.04 
 
 		 206 aa  95.1  6e-19  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000328625  normal  0.180863 
 
 
-
 
NC_009438  Sputcn32_2247  two component LuxR family transcriptional regulator  30.81 
 
 		 220 aa  95.1  6e-19  Shewanella putrefaciens CN-32  Bacteria  normal  0.998494  n/a   
 
 
-
 
NC_009656  PSPA7_3317  putative transcriptional regulator  33.18 
 
 		 221 aa  94.7  7e-19  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_010338  Caul_0621  two component LuxR family transcriptional regulator  29.9 
 
 		 212 aa  95.1  7e-19  Caulobacter sp. K31  Bacteria  normal  1  normal  0.881689 
 
 
-
 
NC_008322  Shewmr7_0664  two component LuxR family transcriptional regulator  30.73 
 
 		 223 aa  95.1  7e-19  Shewanella sp. MR-7  Bacteria  normal  1  normal  0.358413 
 
 
-
 
NC_008700  Sama_2076  response regulator receiver protein  32.52 
 
 		 238 aa  94.7  7e-19  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013595  Sros_1229  response regulator receiver protein  33.02 
 
 		 212 aa  94.7  8e-19  Streptosporangium roseum DSM 43021  Bacteria  normal  0.643884  hitchhiker  0.00799583 
 
 
-
 
NC_010678  Rpic_4675  two component transcriptional regulator, LuxR family  30.7 
 
 		 218 aa  94.7  9e-19  Ralstonia pickettii 12J  Bacteria  normal  0.760252  normal  1 
 
 
-
 
NC_012857  Rpic12D_3598  two component transcriptional regulator, LuxR family  30.7 
 
 		 218 aa  94.7  9e-19  Ralstonia pickettii 12D  Bacteria  normal  0.329097  normal  0.731815 
 
 
-
 
NC_013946  Mrub_0806  two component LuxR family transcriptional regulator  30.37 
 
 		 216 aa  94.4  1e-18  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010676  Bphyt_4850  two component transcriptional regulator, LuxR family  29.27 
 
 		 257 aa  94.4  1e-18  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0778424  normal  0.0399542 
 
 
-
 
NC_013530  Xcel_0239  two component transcriptional regulator, LuxR family  35.35 
 
 		 230 aa  94.4  1e-18  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  1  n/a   
 
 
-
 
NC_012560  Avin_38490  Response regulator, LuxR family  34.16 
 
 		 215 aa  94  1e-18  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_008321  Shewmr4_3283  two component LuxR family transcriptional regulator  30.73 
 
 		 223 aa  94.4  1e-18  Shewanella sp. MR-4  Bacteria  normal  1  normal  0.335218 
 
 
-
 
NC_014212  Mesil_2510  two component transcriptional regulator, LuxR family  31.63 
 
 		 217 aa  94.4  1e-18  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008463  PA14_46360  putative two-component response regulator  31.68 
 
 		 210 aa  94  1e-18  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  0.016821 
 
 
-
 
NC_009512  Pput_2173  two component LuxR family transcriptional regulator  33.01 
 
 		 221 aa  94  1e-18  Pseudomonas putida F1  Bacteria  normal  0.548338  normal  1 
 
 
-
 
NC_009439  Pmen_1943  two component LuxR family transcriptional regulator  31.58 
 
 		 221 aa  94  1e-18  Pseudomonas mendocina ymp  Bacteria  normal  0.550145  normal  1 
 
 
-
 
NC_011988  Avi_5384  two component response regulator  30.48 
 
 		 216 aa  94  2e-18  Agrobacterium vitis S4  Bacteria  normal  1  n/a   
 
 
-
 
NC_013947  Snas_5644  two component transcriptional regulator, LuxR family  30.66 
 
 		 225 aa  93.6  2e-18  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  0.114252 
 
 
-
 
NC_013159  Svir_26840  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  31.63 
 
 		 239 aa  93.2  2e-18  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.274056  normal  0.228776 
 
 
-
 
NC_011662  Tmz1t_1954  two component transcriptional regulator, LuxR family  33.33 
 
 		 220 aa  93.6  2e-18  Thauera sp. MZ1T  Bacteria  normal  0.228638  n/a   
 
 
-
 
NC_009901  Spea_2554  two component LuxR family transcriptional regulator  31.55 
 
 		 219 aa  94  2e-18  Shewanella pealeana ATCC 700345  Bacteria  normal  0.958854  n/a   
 
 
-
 
NC_010322  PputGB1_3138  two component LuxR family transcriptional regulator  33.01 
 
 		 221 aa  93.2  2e-18  Pseudomonas putida GB-1  Bacteria  normal  1  normal  0.892266 
 
 
-
 
NC_008228  Patl_1981  two component LuxR family transcriptional regulator  29.76 
 
 		 213 aa  93.6  2e-18  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.607794  n/a   
 
 
-
 
NC_014158  Tpau_3534  two component transcriptional regulator, LuxR family  31.4 
 
 		 206 aa  93.2  2e-18  Tsukamurella paurometabola DSM 20162  Bacteria  normal  1  n/a   
 
 
-
 
NC_008463  PA14_38930  putative transcriptional regulator  32.06 
 
 		 221 aa  93.6  2e-18  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014210  Ndas_1808  two component transcriptional regulator, LuxR family  32.02 
 
 		 201 aa  94  2e-18  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  0.207018 
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  30.33 
 
 		 220 aa  93.2  3e-18  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_008782  Ajs_0555  two component LuxR family transcriptional regulator  28.78 
 
 		 232 aa  93.2  3e-18  Acidovorax sp. JS42  Bacteria  normal  0.173401  normal  0.808062 
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  30.33 
 
 		 220 aa  93.2  3e-18  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  33.02 
 
 		 225 aa  92.4  4e-18  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_014165  Tbis_0228  LuxR family two component transcriptional regulator  32.38 
 
 		 206 aa  92.4  4e-18  Thermobispora bispora DSM 43833  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009455  DehaBAV1_0632  two component LuxR family transcriptional regulator  32.39 
 
 		 224 aa  92.4  4e-18  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.00385785  n/a   
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  31.07 
 
 		 220 aa  92.4  4e-18  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  0.0000152825 
 
 
-
 
NC_008577  Shewana3_3459  two component LuxR family transcriptional regulator  30.24 
 
 		 223 aa  92.4  4e-18  Shewanella sp. ANA-3  Bacteria  normal  0.306063  normal  0.532773 
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  31.13 
 
 		 220 aa  92.4  4e-18  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_013159  Svir_33010  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  33.49 
 
 		 223 aa  92  5e-18  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.163463  normal  1 
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  29.86 
 
 		 220 aa  92  5e-18  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
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