More than 300 homologs were found in PanDaTox collection
for query gene Dfer_1279 on replicon NC_013037
Organism: Dyadobacter fermentans DSM 18053



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013037  Dfer_1279  two component transcriptional regulator, LytTR family  100 
 
 
248 aa  513  1e-144  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.111911  normal  0.254446 
 
 
-
 
NC_013132  Cpin_6623  two component transcriptional regulator, LytTR family  39.61 
 
 
258 aa  222  4.9999999999999996e-57  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0991065  normal  0.080317 
 
 
-
 
NC_008255  CHU_0254  response regulator  39.18 
 
 
251 aa  197  1.0000000000000001e-49  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.437869  normal 
 
 
-
 
NC_013132  Cpin_0671  two component transcriptional regulator, LytTR family  35.46 
 
 
251 aa  186  3e-46  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_3408  LytTr DNA-binding region  39.09 
 
 
240 aa  178  7e-44  Pedobacter heparinus DSM 2366  Bacteria  normal  0.111489  normal 
 
 
-
 
NC_014230  CA2559_01905  response regulator  36.08 
 
 
243 aa  173  1.9999999999999998e-42  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_5950  two component transcriptional regulator, LytTR family  36.67 
 
 
253 aa  171  7.999999999999999e-42  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.792388  normal  0.0587504 
 
 
-
 
NC_013730  Slin_6582  two component transcriptional regulator, LytTR family  35.95 
 
 
250 aa  171  1e-41  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_0582  two component transcriptional regulator, LytTR family  33.74 
 
 
253 aa  162  5.0000000000000005e-39  Dyadobacter fermentans DSM 18053  Bacteria  hitchhiker  0.000831919  hitchhiker  0.00409076 
 
 
-
 
NC_013037  Dfer_5645  two component transcriptional regulator, LytTR family  37.4 
 
 
248 aa  160  2e-38  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.954414  normal  0.925082 
 
 
-
 
NC_013132  Cpin_2656  two component transcriptional regulator, LytTR family  39.09 
 
 
250 aa  160  2e-38  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.81917  normal 
 
 
-
 
NC_009441  Fjoh_3976  LytTR family two component transcriptional regulator  36.73 
 
 
247 aa  159  5e-38  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_0148  two component transcriptional regulator, LytTR family  34.92 
 
 
251 aa  156  3e-37  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.48043 
 
 
-
 
NC_013037  Dfer_1502  two component transcriptional regulator, LytTR family  34.55 
 
 
254 aa  154  2e-36  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.192215 
 
 
-
 
NC_013061  Phep_1585  LytTr DNA-binding region  35.08 
 
 
259 aa  151  8.999999999999999e-36  Pedobacter heparinus DSM 2366  Bacteria  normal  0.80455  normal  0.0356965 
 
 
-
 
NC_013132  Cpin_6586  two component transcriptional regulator, LytTR family  29.83 
 
 
246 aa  134  9.999999999999999e-31  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.318104  normal 
 
 
-
 
NC_013061  Phep_1542  LytTr DNA-binding region  33.2 
 
 
245 aa  132  3.9999999999999996e-30  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.300206 
 
 
-
 
NC_011138  MADE_01918  putative response regulator in two-component regulatory system  32.95 
 
 
275 aa  131  1.0000000000000001e-29  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.159199  n/a   
 
 
-
 
NC_008009  Acid345_1001  LytR/AlgR family transcriptional regulator  32.57 
 
 
262 aa  129  3e-29  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.0103069 
 
 
-
 
NC_013132  Cpin_1006  two component transcriptional regulator, LytTR family  30.16 
 
 
251 aa  129  5.0000000000000004e-29  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.641502  normal 
 
 
-
 
NC_013132  Cpin_0374  two component transcriptional regulator, LytTR family  33.06 
 
 
242 aa  127  2.0000000000000002e-28  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_5142  two component transcriptional regulator, LytTR family  31.98 
 
 
244 aa  125  5e-28  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.546377  normal 
 
 
-
 
NC_013457  VEA_000974  response regulator of the LytR/AlgR family  32.79 
 
 
263 aa  125  6e-28  Vibrio sp. Ex25  Bacteria  normal  0.728867  n/a   
 
 
-
 
NC_010571  Oter_2329  LytTR family two component transcriptional regulator  31.2 
 
 
255 aa  125  7e-28  Opitutus terrae PB90-1  Bacteria  normal  0.0531557  decreased coverage  0.00207881 
 
 
-
 
NC_009784  VIBHAR_07024  transcriptional regulator  31.91 
 
 
263 aa  123  2e-27  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008751  Dvul_2356  response regulator receiver protein  31.52 
 
 
257 aa  123  2e-27  Desulfovibrio vulgaris DP4  Bacteria  normal  0.325932  normal  0.149931 
 
 
-
 
NC_013037  Dfer_4386  two component transcriptional regulator, LytTR family  32.77 
 
 
260 aa  124  2e-27  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_3594  two component transcriptional regulator, LytTR family  33.19 
 
 
260 aa  123  3e-27  Spirosoma linguale DSM 74  Bacteria  normal  0.833136  normal  0.0457058 
 
 
-
 
NC_013061  Phep_3159  response regulator receiver  31.49 
 
 
242 aa  121  9.999999999999999e-27  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_0420  LytR/AlgR family transcriptional regulator  32.8 
 
 
317 aa  121  9.999999999999999e-27  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.0328897  normal  0.0302219 
 
 
-
 
NC_013037  Dfer_1004  two component transcriptional regulator, LytTR family  33.62 
 
 
257 aa  121  9.999999999999999e-27  Dyadobacter fermentans DSM 18053  Bacteria  decreased coverage  0.00878343  normal  0.279198 
 
 
-
 
NC_009456  VC0395_0387  response regulator  30.95 
 
 
261 aa  121  9.999999999999999e-27  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E0865  putative two-component response-regulatory protein YehT  31.51 
 
 
239 aa  120  1.9999999999999998e-26  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_2328  LytTR family two component transcriptional regulator  29.67 
 
 
255 aa  120  1.9999999999999998e-26  Opitutus terrae PB90-1  Bacteria  normal  0.261765  decreased coverage  0.00199939 
 
 
-
 
NC_008009  Acid345_3487  LytR/AlgR family transcriptional regulator  31.34 
 
 
253 aa  120  3e-26  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.76921  normal 
 
 
-
 
NC_008255  CHU_2575  two-component response regulator  32.93 
 
 
241 aa  120  3e-26  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_02054  predicted response regulator in two-component system withYehU  31.51 
 
 
239 aa  119  3.9999999999999996e-26  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_2413  putative two-component response-regulatory protein YehT  31.51 
 
 
239 aa  119  3.9999999999999996e-26  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A2259  putative two-component response-regulatory protein YehT  31.51 
 
 
239 aa  119  3.9999999999999996e-26  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1533  two component transcriptional regulator, LytTR family  31.51 
 
 
239 aa  119  3.9999999999999996e-26  Escherichia coli DH1  Bacteria  normal  0.726215  n/a   
 
 
-
 
NC_009665  Shew185_0055  LytTR family two component transcriptional regulator  30.12 
 
 
243 aa  119  3.9999999999999996e-26  Shewanella baltica OS185  Bacteria  normal  0.868518  n/a   
 
 
-
 
NC_007925  RPC_1083  putative two-component response-regulatory protein YehT  33.33 
 
 
239 aa  119  3.9999999999999996e-26  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.450563  normal 
 
 
-
 
NC_012892  B21_02012  hypothetical protein  31.51 
 
 
239 aa  119  3.9999999999999996e-26  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1522  putative two-component response-regulatory protein YehT  31.51 
 
 
239 aa  119  3.9999999999999996e-26  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_3112  putative two-component response-regulatory protein YehT  31.51 
 
 
239 aa  119  3.9999999999999996e-26  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.148941 
 
 
-
 
NC_010498  EcSMS35_0919  putative two-component response-regulatory protein YehT  31.51 
 
 
239 aa  119  7e-26  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_1860  two component transcriptional regulator, LytTR family  33.07 
 
 
266 aa  117  9.999999999999999e-26  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_0898  two component transcriptional regulator, LytTR family  30.58 
 
 
265 aa  117  9.999999999999999e-26  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_0059  two component transcriptional regulator, LytTR family  29.6 
 
 
243 aa  117  1.9999999999999998e-25  Shewanella baltica OS223  Bacteria  normal  0.182784  normal 
 
 
-
 
NC_007912  Sde_3900  response regulator receiver domain-containing protein  31.84 
 
 
261 aa  117  1.9999999999999998e-25  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_0060  LytTR family two component transcriptional regulator  29.6 
 
 
243 aa  116  3e-25  Shewanella baltica OS195  Bacteria  normal  0.0478076  hitchhiker  0.000497336 
 
 
-
 
NC_009052  Sbal_4299  LytTR family two component transcriptional regulator  29.6 
 
 
243 aa  116  3e-25  Shewanella baltica OS155  Bacteria  decreased coverage  0.000001386  n/a   
 
 
-
 
NC_008321  Shewmr4_0057  response regulator receiver protein  29.2 
 
 
243 aa  115  6e-25  Shewanella sp. MR-4  Bacteria  decreased coverage  0.0000048418  decreased coverage  0.0000000648872 
 
 
-
 
NC_008322  Shewmr7_0055  response regulator receiver protein  29.2 
 
 
243 aa  115  6e-25  Shewanella sp. MR-7  Bacteria  decreased coverage  0.0000989316  hitchhiker  0.000468323 
 
 
-
 
NC_009483  Gura_2443  LytTR family two component transcriptional regulator  29.55 
 
 
279 aa  115  7.999999999999999e-25  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_0480  response regulator receiver domain-containing protein  27.31 
 
 
265 aa  113  2.0000000000000002e-24  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_0704  LytTR family two component transcriptional regulator  29 
 
 
276 aa  114  2.0000000000000002e-24  Opitutus terrae PB90-1  Bacteria  normal  normal  0.674394 
 
 
-
 
NC_008009  Acid345_3291  LytR/AlgR family transcriptional regulator  26.88 
 
 
258 aa  114  2.0000000000000002e-24  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.393667  normal 
 
 
-
 
NC_013132  Cpin_5734  two component transcriptional regulator, LytTR family  31.78 
 
 
257 aa  113  2.0000000000000002e-24  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_2186  two component transcriptional regulator, LytTR family  29.85 
 
 
275 aa  113  2.0000000000000002e-24  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_0137  two component transcriptional regulator, LytTR family  32.23 
 
 
237 aa  113  3e-24  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A2348  putative two-component response-regulatory protein YehT  29.83 
 
 
239 aa  112  4.0000000000000004e-24  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A2505  putative two-component response-regulatory protein YehT  29.83 
 
 
239 aa  112  4.0000000000000004e-24  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A2397  putative two-component response-regulatory protein YehT  29.83 
 
 
239 aa  112  4.0000000000000004e-24  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.423362  normal 
 
 
-
 
NC_011149  SeAg_B2304  putative two-component response-regulatory protein YehT  29.83 
 
 
239 aa  112  4.0000000000000004e-24  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C2393  putative two-component response-regulatory protein YehT  29.83 
 
 
239 aa  112  4.0000000000000004e-24  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_1281  putative two-component response-regulatory protein YehT  32.27 
 
 
236 aa  112  5e-24  Shewanella amazonensis SB2B  Bacteria  normal  0.155887  normal  0.0159688 
 
 
-
 
NC_012912  Dd1591_0959  putative two-component response-regulatory protein YehT  30.67 
 
 
241 aa  112  6e-24  Dickeya zeae Ech1591  Bacteria  normal  0.606019  n/a   
 
 
-
 
NC_013730  Slin_2133  two component transcriptional regulator, LytTR family  28.4 
 
 
256 aa  112  8.000000000000001e-24  Spirosoma linguale DSM 74  Bacteria  normal  0.926336  normal  0.829991 
 
 
-
 
NC_008048  Sala_2673  response regulator receiver protein  28.89 
 
 
268 aa  111  9e-24  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.587227  normal  0.606797 
 
 
-
 
NC_007517  Gmet_2697  LytR/AlgR family transcriptional regulator  30.83 
 
 
240 aa  111  1.0000000000000001e-23  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_0161  LytR/AlgR family transcriptional regulator  28.95 
 
 
270 aa  111  1.0000000000000001e-23  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_0227  LytR/AlgR family transcriptional regulator  31.11 
 
 
265 aa  110  1.0000000000000001e-23  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.312706  n/a   
 
 
-
 
NC_012856  Rpic12D_1290  two component transcriptional regulator, LytTR family  27.84 
 
 
277 aa  111  1.0000000000000001e-23  Ralstonia pickettii 12D  Bacteria  normal  normal  0.212023 
 
 
-
 
NC_009511  Swit_2974  LytTR family two component transcriptional regulator  30.07 
 
 
266 aa  111  1.0000000000000001e-23  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.318128 
 
 
-
 
NC_011071  Smal_0421  two component transcriptional regulator, LytTR family  30.21 
 
 
256 aa  111  1.0000000000000001e-23  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.268274 
 
 
-
 
NC_003910  CPS_2278  LytTr DNA-binding response regulator  28.89 
 
 
280 aa  110  2.0000000000000002e-23  Colwellia psychrerythraea 34H  Bacteria  normal  0.421967  n/a   
 
 
-
 
NC_013170  Ccur_01160  response regulator of the LytR/AlgR family  32.1 
 
 
238 aa  110  2.0000000000000002e-23  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_1227  two component transcriptional regulator, LytTR family  27.84 
 
 
277 aa  110  3e-23  Ralstonia pickettii 12J  Bacteria  normal  0.299238  normal  0.813842 
 
 
-
 
NC_009675  Anae109_1440  putative two-component response-regulatory protein YehT  30 
 
 
236 aa  109  4.0000000000000004e-23  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_011312  VSAL_I1318  putative two-component response-regulatory protein YehT  30.8 
 
 
238 aa  108  6e-23  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_10420  two component transcriptional regulator, LytTR family  30.12 
 
 
253 aa  108  6e-23  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.0000000000460621  n/a   
 
 
-
 
NC_009436  Ent638_2723  putative two-component response-regulatory protein YehT  31.84 
 
 
239 aa  108  7.000000000000001e-23  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_3416  putative two-component response-regulatory protein YehT  32.37 
 
 
237 aa  108  7.000000000000001e-23  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.329348  normal  0.0577965 
 
 
-
 
NC_010571  Oter_3913  LytTR family two component transcriptional regulator  28.84 
 
 
268 aa  108  8.000000000000001e-23  Opitutus terrae PB90-1  Bacteria  normal  0.316099  normal 
 
 
-
 
NC_010571  Oter_1527  LytTR family two component transcriptional regulator  30.74 
 
 
246 aa  108  8.000000000000001e-23  Opitutus terrae PB90-1  Bacteria  normal  0.109257  normal 
 
 
-
 
NC_011992  Dtpsy_1069  two component transcriptional regulator, LytTR family  30.65 
 
 
276 aa  108  9.000000000000001e-23  Acidovorax ebreus TPSY  Bacteria  normal  0.257927  n/a   
 
 
-
 
NC_013037  Dfer_5358  two component transcriptional regulator, LytTR family  30.77 
 
 
235 aa  108  1e-22  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A1965  response regulator receiver:LytTr DNA-binding region  28.41 
 
 
273 aa  108  1e-22  Ralstonia eutropha JMP134  Bacteria  normal  0.864475  n/a   
 
 
-
 
NC_009718  Fnod_1246  LytTR family two component transcriptional regulator  30.25 
 
 
254 aa  107  1e-22  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_4134  LytTR family two component transcriptional regulator  30.8 
 
 
243 aa  107  1e-22  Flavobacterium johnsoniae UW101  Bacteria  normal  0.291369  n/a   
 
 
-
 
NC_007298  Daro_2093  putative two-component response-regulatory protein YehT  32.28 
 
 
237 aa  106  3e-22  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4010  two component transcriptional regulator, LytTR family  30.9 
 
 
231 aa  106  3e-22  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0569074  decreased coverage  0.00157623 
 
 
-
 
NC_009441  Fjoh_4908  LytTR family two component transcriptional regulator  30 
 
 
255 aa  107  3e-22  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_2906  two component transcriptional regulator, LytTR family  31.09 
 
 
245 aa  106  4e-22  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_2035  response regulator receiver protein  27.96 
 
 
282 aa  106  4e-22  Acidovorax citrulli AAC00-1  Bacteria  normal  0.150352  normal 
 
 
-
 
NC_010571  Oter_1114  LytTR family two component transcriptional regulator  31.34 
 
 
249 aa  105  5e-22  Opitutus terrae PB90-1  Bacteria  normal  0.677936  normal 
 
 
-
 
NC_007954  Sden_0847  response regulator receiver  31.2 
 
 
232 aa  105  5e-22  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A0224  putative two-component response-regulatory protein YehT  30.62 
 
 
237 aa  105  5e-22  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_2385  response regulator receiver protein  28.15 
 
 
272 aa  105  7e-22  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
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