| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_0148 |
|---|
| Symbol | |
|---|
| ID | 8223714 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 163667 |
|---|
| End bp | 164422 |
|---|
| Gene Length | 756 bp |
|---|
| Protein Length | 251 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644928027 |
|---|
| Product | two component transcriptional regulator, LytTR family |
|---|
| Protein accession | YP_003084584 |
|---|
| Protein GI | 255033963 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3279] Response regulator of the LytR/AlgR family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.48043 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAAAA CACTGATTAT CGATGACGAA CAGAAAGCAC GCAATGTTCT GAATCACTAC
CTGAACAGCT CGGTCAGGCA AGAGGTCGAC ATCCGGCATG CCGAGTCGGT CAAAGAAGCG
CTGAAAGTAT TGGAAAGCTT CCAGCCCGAC ATTGTTTTTC TGGATGTGGA AATGCCGCAC
CAAAACGGCT TCGAGTTTTT GCTGGCCAGA AAAAATCCGC CCTACGACAT CGTCTTCACG
ACGGCTTTCA ACCAGTATGC CATCCAGGCG ATCCGGTTCA GCGCGCTCGA CTACCTCCTC
AAACCGGTAG ATCCCGAAGA ACTGCAATCG GCGATAGACC GTCACATCGA AAAAGTGAAG
GAAAAACCGA AGCAGGAAAC GCAGCAGCTC TACGACAATC TCGTCCACAA TATCGAGAAG
AAGAACATCC GCGATTTCCG GCTCGCCGTT CCGTCGAGCG AAGGTGTATT TTTCTTTACG
CTCGACGAAA TTCTCCGTTT GGAAGCCGAT AAGAACTACA CGGCAATTCA CCTGATCGGA
AAACGGCCGT TTCTGGCGAG TAAAACGCTG AAACATTTCG ACGAAATGCT GGGAGAATTT
AATTTCATCA GAACGCATAA ATCGCACCTC GTAAATCCGA AGTACATTAA GCAGGTGACG
CACAACAACC AGTTCCTGCT GCTGTCGGAC GGTTCGAGGA TCGAGATTTC GCGACGGAAG
AAGGAGCTGG TTCAGCAGTA TCTGAAATTG AAATGA
|
|---|
| Protein sequence | MLKTLIIDDE QKARNVLNHY LNSSVRQEVD IRHAESVKEA LKVLESFQPD IVFLDVEMPH
QNGFEFLLAR KNPPYDIVFT TAFNQYAIQA IRFSALDYLL KPVDPEELQS AIDRHIEKVK
EKPKQETQQL YDNLVHNIEK KNIRDFRLAV PSSEGVFFFT LDEILRLEAD KNYTAIHLIG
KRPFLASKTL KHFDEMLGEF NFIRTHKSHL VNPKYIKQVT HNNQFLLLSD GSRIEISRRK
KELVQQYLKL K
|
|---|
| |