| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3408 |
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| Symbol | |
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| ID | 8254527 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 4059341 |
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| End bp | 4060063 |
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| Gene Length | 723 bp |
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| Protein Length | 240 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 644937060 |
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| Product | LytTr DNA-binding region |
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| Protein accession | YP_003093664 |
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| Protein GI | 255533292 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3279] Response regulator of the LytR/AlgR family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.111489 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCTAAAAG CGGTCATATT GGATGATGAG GTGCGGGGAA GTAATCTGCT GACCCGTAAG
CTGGAGGTGT TTGGAGACGA TTTACAGATA GAGGCCATTT TTAACGATCC TTTTAAAGCG
CTTTCTAAAA TTGTAGAATT AAACCCGGAC GTTCTTTTTT TAGATGTTGA AATGCCAGGA
CTAAATGGCT TTCAGTTCCT GGAGAAATTA GGCTCTTTCA ATTTTCAGGT CATCTTTACT
ACAGCTTATG ATACATTCAC ATTAGAAGCC CTTCGTTTAA GTGCTGTAGA TTACCTGGTT
AAACCAATAG ATGAAGATGA ATTGCATACT GCCATTTTCA GACTAAAGAA AAGGGTTGCC
GATTATACGA AACACATTCC GCTAACGGAT CAAAATTCAG CACCCAACAG ACTTGCCCTA
TCAACAGCCG AGGGCGTTTA TTTTGTAAAT AAAGCCAGTA TTATGCGGGT TGAAGCCATG
AGTAATTACA GTACCTTTTA TCTGCAGGAC CGTAAGAAGA TCATCGTTTC CAAAACACTT
AAGGAATATG AAAGCGTTTT GCAGGGCGGA TCTTTTTTAC GTATTAACCG ATCAGTTATT
GTTAATCTGG ACCATGTTGT GAAATATAGA AAAGGAGATG GCGGAACGCT GGAAATGAAT
GATGGGGCCG AGATCGAGGT CTCTGCATCG AGAAAAGACC TATTGATGGA AAAGTTGTTT
TAG
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| Protein sequence | MLKAVILDDE VRGSNLLTRK LEVFGDDLQI EAIFNDPFKA LSKIVELNPD VLFLDVEMPG
LNGFQFLEKL GSFNFQVIFT TAYDTFTLEA LRLSAVDYLV KPIDEDELHT AIFRLKKRVA
DYTKHIPLTD QNSAPNRLAL STAEGVYFVN KASIMRVEAM SNYSTFYLQD RKKIIVSKTL
KEYESVLQGG SFLRINRSVI VNLDHVVKYR KGDGGTLEMN DGAEIEVSAS RKDLLMEKLF
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