| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_0671 |
|---|
| Symbol | |
|---|
| ID | 8356783 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 812328 |
|---|
| End bp | 813083 |
|---|
| Gene Length | 756 bp |
|---|
| Protein Length | 251 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644962823 |
|---|
| Product | two component transcriptional regulator, LytTR family |
|---|
| Protein accession | YP_003120370 |
|---|
| Protein GI | 256419717 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3279] Response regulator of the LytR/AlgR family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCACCA TTATCGTGGA TGATGAAAAA CTTAGCAGAA GCGTTTTGAA GCTTTTGCTG
GAGAAGCATT GCCCTGCAGT TAATATAGTG GCAGTTTGCG CTGACGGGAT TTCTGCATTA
GAGGCAATAG AAAAGTACCA GCCAGACCTG CTTTTCCTGG ACATTGAGAT GCCGGGTCTG
AATGGATTTG AGGTACTGAA GGCGTGTAAA GACGCCAGCT TTTCCATTAT TGTTACCACT
TCATATGATC ATTATGCACT GGATGCTATC CGGCATAATG CGCTGGACTA TTTGCTAAAA
CCCATCATCA GGGACGACCT GACGGATGCT GTTGATAAGG CCATGGCCCG TCACCAGCAA
AAAGCACAGC CAGAAAGTAA ATCGGATACT TCCATACTGG AAGTATTGCA TCAACACCTC
TATCCTGGAG AAAGACTGGC GCTACCAAGC CCGGAAGGAT TACGGATACT CCTGGTAAAA
GACATTTTAT ACTGTGTAGC CGATGGGGAA ACCACCCTCG TACACCTGGT AAATACAACA
GCGCCTTCCC TGGTATGCCG TTCACTCAAA GAAGTGGAAG GACAGCTGAA GAACAAGGGC
TTCTTCAGGG TACATCACAG CTATGTGATC AATCTTAATT ATATGGACCG GTATATCAAA
GGAGACGGAG GAGATATTAT TATGAGCGAT GGTAGTTGTA TACCGGTGTC CCGTCATCGC
AAGCAGGAGT TTATGGATAG GATAGAAAAG CTTTAA
|
|---|
| Protein sequence | MRTIIVDDEK LSRSVLKLLL EKHCPAVNIV AVCADGISAL EAIEKYQPDL LFLDIEMPGL
NGFEVLKACK DASFSIIVTT SYDHYALDAI RHNALDYLLK PIIRDDLTDA VDKAMARHQQ
KAQPESKSDT SILEVLHQHL YPGERLALPS PEGLRILLVK DILYCVADGE TTLVHLVNTT
APSLVCRSLK EVEGQLKNKG FFRVHHSYVI NLNYMDRYIK GDGGDIIMSD GSCIPVSRHR
KQEFMDRIEK L
|
|---|
| |