More than 300 homologs were found in PanDaTox collection
for query gene Dfer_1004 on replicon NC_013037
Organism: Dyadobacter fermentans DSM 18053



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013037  Dfer_1004  two component transcriptional regulator, LytTR family  100 
 
 
257 aa  533  1e-150  Dyadobacter fermentans DSM 18053  Bacteria  decreased coverage  0.00878343  normal  0.279198 
 
 
-
 
NC_010571  Oter_0067  LytTR family two component transcriptional regulator  39.84 
 
 
268 aa  193  2e-48  Opitutus terrae PB90-1  Bacteria  normal  0.169577  normal  0.169612 
 
 
-
 
NC_010571  Oter_3913  LytTR family two component transcriptional regulator  39.33 
 
 
268 aa  192  5e-48  Opitutus terrae PB90-1  Bacteria  normal  0.316099  normal 
 
 
-
 
NC_008009  Acid345_3291  LytR/AlgR family transcriptional regulator  39.16 
 
 
258 aa  188  9e-47  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.393667  normal 
 
 
-
 
NC_010571  Oter_0704  LytTR family two component transcriptional regulator  36.9 
 
 
276 aa  184  9e-46  Opitutus terrae PB90-1  Bacteria  normal  normal  0.674394 
 
 
-
 
NC_008048  Sala_2673  response regulator receiver protein  35.45 
 
 
268 aa  178  8e-44  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.587227  normal  0.606797 
 
 
-
 
NC_008009  Acid345_3838  LytR/AlgR family transcriptional regulator  37.45 
 
 
254 aa  176  3e-43  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.479778 
 
 
-
 
NC_007794  Saro_0227  LytR/AlgR family transcriptional regulator  36.23 
 
 
265 aa  175  6e-43  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.312706  n/a   
 
 
-
 
NC_013501  Rmar_1860  two component transcriptional regulator, LytTR family  39.04 
 
 
266 aa  175  7e-43  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_4382  LytTR family two component transcriptional regulator  35.29 
 
 
273 aa  174  9.999999999999999e-43  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_2974  LytTR family two component transcriptional regulator  34.96 
 
 
266 aa  174  9.999999999999999e-43  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.318128 
 
 
-
 
NC_010571  Oter_2329  LytTR family two component transcriptional regulator  35.83 
 
 
255 aa  169  6e-41  Opitutus terrae PB90-1  Bacteria  normal  0.0531557  decreased coverage  0.00207881 
 
 
-
 
NC_008009  Acid345_0420  LytR/AlgR family transcriptional regulator  34.73 
 
 
317 aa  168  9e-41  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.0328897  normal  0.0302219 
 
 
-
 
NC_003910  CPS_2278  LytTr DNA-binding response regulator  36.36 
 
 
280 aa  166  2.9999999999999998e-40  Colwellia psychrerythraea 34H  Bacteria  normal  0.421967  n/a   
 
 
-
 
NC_011138  MADE_01918  putative response regulator in two-component regulatory system  34.59 
 
 
275 aa  166  2.9999999999999998e-40  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.159199  n/a   
 
 
-
 
NC_010571  Oter_2328  LytTR family two component transcriptional regulator  33.86 
 
 
255 aa  166  4e-40  Opitutus terrae PB90-1  Bacteria  normal  0.261765  decreased coverage  0.00199939 
 
 
-
 
NC_013037  Dfer_5142  two component transcriptional regulator, LytTR family  39.17 
 
 
244 aa  165  6.9999999999999995e-40  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.546377  normal 
 
 
-
 
NC_003910  CPS_3718  response regulator  34.93 
 
 
275 aa  165  8e-40  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1819  LytTr DNA-binding response regulator  32.93 
 
 
260 aa  164  1.0000000000000001e-39  Colwellia psychrerythraea 34H  Bacteria  normal  0.148301  n/a   
 
 
-
 
NC_008009  Acid345_1001  LytR/AlgR family transcriptional regulator  37.39 
 
 
262 aa  162  4.0000000000000004e-39  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.0103069 
 
 
-
 
NC_008009  Acid345_3487  LytR/AlgR family transcriptional regulator  37.55 
 
 
253 aa  162  4.0000000000000004e-39  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.76921  normal 
 
 
-
 
NC_008228  Patl_2385  response regulator receiver protein  33.21 
 
 
272 aa  157  2e-37  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_0480  response regulator receiver domain-containing protein  34.11 
 
 
265 aa  154  1e-36  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_1542  LytTr DNA-binding region  36.91 
 
 
245 aa  154  1e-36  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.300206 
 
 
-
 
NC_013037  Dfer_4386  two component transcriptional regulator, LytTR family  38.08 
 
 
260 aa  154  1e-36  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_2172  LytR/AlgR family transcriptional regulator  34.38 
 
 
252 aa  152  4e-36  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0721488  normal  0.0255714 
 
 
-
 
NC_013061  Phep_3159  response regulator receiver  34.8 
 
 
242 aa  152  5e-36  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_0374  two component transcriptional regulator, LytTR family  36.25 
 
 
242 aa  151  1e-35  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_2723  putative two-component response-regulatory protein YehT  36.65 
 
 
239 aa  150  2e-35  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_5734  two component transcriptional regulator, LytTR family  37.35 
 
 
257 aa  149  6e-35  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_6586  two component transcriptional regulator, LytTR family  33.73 
 
 
246 aa  148  8e-35  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.318104  normal 
 
 
-
 
NC_010498  EcSMS35_0919  putative two-component response-regulatory protein YehT  34 
 
 
239 aa  146  2.0000000000000003e-34  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_3958  LytTR family two component transcriptional regulator  33.2 
 
 
246 aa  147  2.0000000000000003e-34  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_3594  two component transcriptional regulator, LytTR family  35.91 
 
 
260 aa  146  3e-34  Spirosoma linguale DSM 74  Bacteria  normal  0.833136  normal  0.0457058 
 
 
-
 
NC_013730  Slin_2906  two component transcriptional regulator, LytTR family  36.36 
 
 
245 aa  145  4.0000000000000006e-34  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_02054  predicted response regulator in two-component system withYehU  34 
 
 
239 aa  145  6e-34  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A2397  putative two-component response-regulatory protein YehT  34.8 
 
 
239 aa  145  6e-34  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.423362  normal 
 
 
-
 
CP001637  EcDH1_1533  two component transcriptional regulator, LytTR family  34 
 
 
239 aa  145  6e-34  Escherichia coli DH1  Bacteria  normal  0.726215  n/a   
 
 
-
 
NC_011353  ECH74115_3112  putative two-component response-regulatory protein YehT  34 
 
 
239 aa  145  6e-34  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.148941 
 
 
-
 
NC_011149  SeAg_B2304  putative two-component response-regulatory protein YehT  34.8 
 
 
239 aa  145  6e-34  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A2259  putative two-component response-regulatory protein YehT  34 
 
 
239 aa  145  6e-34  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_2413  putative two-component response-regulatory protein YehT  34 
 
 
239 aa  145  6e-34  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A2505  putative two-component response-regulatory protein YehT  34.8 
 
 
239 aa  145  6e-34  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_02012  hypothetical protein  34 
 
 
239 aa  145  6e-34  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1522  putative two-component response-regulatory protein YehT  34 
 
 
239 aa  145  6e-34  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C2393  putative two-component response-regulatory protein YehT  34.8 
 
 
239 aa  145  6e-34  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A2348  putative two-component response-regulatory protein YehT  34.8 
 
 
239 aa  145  6e-34  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E0865  putative two-component response-regulatory protein YehT  34.4 
 
 
239 aa  144  1e-33  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_0957  putative two-component response-regulatory protein YehT  33.99 
 
 
241 aa  144  1e-33  Dickeya dadantii Ech703  Bacteria  normal  0.147856  n/a   
 
 
-
 
NC_010571  Oter_1527  LytTR family two component transcriptional regulator  35.12 
 
 
246 aa  142  4e-33  Opitutus terrae PB90-1  Bacteria  normal  0.109257  normal 
 
 
-
 
NC_006274  BCZK5137  response regulator  33.99 
 
 
246 aa  142  6e-33  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B5384  response regulator LytR  33.99 
 
 
246 aa  142  6e-33  Bacillus cereus G9842  Bacteria  normal  0.662493  normal  0.485514 
 
 
-
 
NC_010184  BcerKBAB4_5234  LytTR family two component transcriptional regulator  33.2 
 
 
246 aa  140  9.999999999999999e-33  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A5565  response regulator LytR  33.6 
 
 
246 aa  141  9.999999999999999e-33  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2356  response regulator receiver protein  34.48 
 
 
257 aa  141  9.999999999999999e-33  Desulfovibrio vulgaris DP4  Bacteria  normal  0.325932  normal  0.149931 
 
 
-
 
NC_003909  BCE_5573  response regulator LytR  33.2 
 
 
246 aa  140  3e-32  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS5295  response regulator LytR  33.2 
 
 
246 aa  140  3e-32  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_5122  response regulator  33.2 
 
 
246 aa  140  3e-32  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_5536  response regulator LytR  33.2 
 
 
246 aa  140  3e-32  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_007530  GBAA_5691  response regulator LytR  33.2 
 
 
246 aa  140  3e-32  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_2186  two component transcriptional regulator, LytTR family  34.73 
 
 
275 aa  140  3e-32  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A5621  response regulator LytR  32.81 
 
 
246 aa  138  8.999999999999999e-32  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_0161  LytR/AlgR family transcriptional regulator  31.85 
 
 
270 aa  137  2e-31  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_0959  putative two-component response-regulatory protein YehT  32.81 
 
 
241 aa  136  3.0000000000000003e-31  Dickeya zeae Ech1591  Bacteria  normal  0.606019  n/a   
 
 
-
 
NC_013173  Dbac_2397  two component transcriptional regulator, LytTR family  33.2 
 
 
261 aa  135  5e-31  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1761  two component transcriptional regulator, LytTR family  33.61 
 
 
251 aa  134  9.999999999999999e-31  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_008528  OEOE_0885  response regulator  33.06 
 
 
247 aa  134  9.999999999999999e-31  Oenococcus oeni PSU-1  Bacteria  normal  0.0355946  n/a   
 
 
-
 
NC_007912  Sde_3733  response regulator receiver domain-containing protein  28.69 
 
 
249 aa  133  1.9999999999999998e-30  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.766169 
 
 
-
 
NC_013457  VEA_000974  response regulator of the LytR/AlgR family  32.23 
 
 
263 aa  133  1.9999999999999998e-30  Vibrio sp. Ex25  Bacteria  normal  0.728867  n/a   
 
 
-
 
NC_010424  Daud_0119  response regulator receiver protein  35.32 
 
 
249 aa  134  1.9999999999999998e-30  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_3900  response regulator receiver domain-containing protein  33.74 
 
 
261 aa  133  3e-30  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_3221  putative two-component response-regulatory protein YehT  33.46 
 
 
238 aa  131  9e-30  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_0469  response regulator receiver protein  34.54 
 
 
254 aa  131  1.0000000000000001e-29  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_3358  putative two-component response-regulatory protein YehT  32.68 
 
 
238 aa  131  1.0000000000000001e-29  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3485  putative two-component response-regulatory protein YehT  32.68 
 
 
238 aa  131  1.0000000000000001e-29  Yersinia pestis Angola  Bacteria  normal  normal  0.159726 
 
 
-
 
NC_008228  Patl_1149  response regulator receiver protein  32.39 
 
 
239 aa  131  1.0000000000000001e-29  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_0444  response regulator receiver protein  32.66 
 
 
262 aa  131  1.0000000000000001e-29  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_07024  transcriptional regulator  31.82 
 
 
263 aa  131  1.0000000000000001e-29  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013385  Adeg_0898  two component transcriptional regulator, LytTR family  37.02 
 
 
265 aa  130  2.0000000000000002e-29  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_3773  two component transcriptional regulator, LytTR family  32.67 
 
 
260 aa  130  3e-29  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.10961  normal 
 
 
-
 
NC_009632  SaurJH1_0252  two-component response regulator  31.08 
 
 
246 aa  129  4.0000000000000003e-29  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_0246  two-component response regulator  31.08 
 
 
246 aa  129  4.0000000000000003e-29  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_004116  SAG0183  response regulator  29.53 
 
 
246 aa  128  9.000000000000001e-29  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_009718  Fnod_1246  LytTR family two component transcriptional regulator  30.59 
 
 
254 aa  127  1.0000000000000001e-28  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A0224  putative two-component response-regulatory protein YehT  33.98 
 
 
237 aa  127  1.0000000000000001e-28  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2697  LytR/AlgR family transcriptional regulator  35.25 
 
 
240 aa  127  2.0000000000000002e-28  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_009456  VC0395_0387  response regulator  31.93 
 
 
261 aa  127  2.0000000000000002e-28  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_1765  putative two-component response-regulatory protein YehT  31.84 
 
 
232 aa  126  4.0000000000000003e-28  Shewanella woodyi ATCC 51908  Bacteria  normal  0.199181  hitchhiker  0.00544661 
 
 
-
 
NC_009654  Mmwyl1_3341  putative two-component response-regulatory protein YehT  31.73 
 
 
244 aa  125  5e-28  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.798853 
 
 
-
 
NC_013170  Ccur_01160  response regulator of the LytR/AlgR family  33.6 
 
 
238 aa  125  5e-28  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_4495  LytTR family two component transcriptional regulator  30.43 
 
 
245 aa  125  5e-28  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.17015 
 
 
-
 
NC_007644  Moth_1964  LytR/AlgR family transcriptional regulator  31.49 
 
 
255 aa  125  8.000000000000001e-28  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal  0.777054 
 
 
-
 
NC_011899  Hore_10420  two component transcriptional regulator, LytTR family  32.94 
 
 
253 aa  124  1e-27  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.0000000000460621  n/a   
 
 
-
 
NC_013037  Dfer_0764  two component transcriptional regulator, LytTR family  34 
 
 
245 aa  124  1e-27  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.626213 
 
 
-
 
NC_011663  Sbal223_2685  putative two-component response-regulatory protein YehT  30.36 
 
 
236 aa  125  1e-27  Shewanella baltica OS223  Bacteria  normal  0.0538398  hitchhiker  0.000367908 
 
 
-
 
NC_013132  Cpin_4010  two component transcriptional regulator, LytTR family  33.48 
 
 
231 aa  124  1e-27  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0569074  decreased coverage  0.00157623 
 
 
-
 
NC_009997  Sbal195_1695  putative two-component response-regulatory protein YehT  30.36 
 
 
236 aa  125  1e-27  Shewanella baltica OS195  Bacteria  decreased coverage  0.00000884824  normal 
 
 
-
 
NC_009665  Shew185_1658  putative two-component response-regulatory protein YehT  30.36 
 
 
236 aa  125  1e-27  Shewanella baltica OS185  Bacteria  hitchhiker  0.00000000153786  n/a   
 
 
-
 
NC_009052  Sbal_1673  putative two-component response-regulatory protein YehT  30.36 
 
 
236 aa  125  1e-27  Shewanella baltica OS155  Bacteria  hitchhiker  0.00000537167  n/a   
 
 
-
 
NC_009483  Gura_2443  LytTR family two component transcriptional regulator  36.02 
 
 
279 aa  124  2e-27  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
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