| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_1004 |
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| Symbol | |
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| ID | 8224574 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 1175215 |
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| End bp | 1175988 |
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| Gene Length | 774 bp |
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| Protein Length | 257 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 644928865 |
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| Product | two component transcriptional regulator, LytTR family |
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| Protein accession | YP_003085418 |
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| Protein GI | 255034797 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3279] Response regulator of the LytR/AlgR family |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.00878343 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.279198 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATACC GCTGCCTGAT CATTGACGAC GAAGTGCTGG CGAGGGACGT AATCAGAACA
TTTGTACAGC ATGACCATTC CATTGAAATC ACCGACGAGG CTGCCAACGG CTCGGAGGCG
GTGGTAAAAA TATTGCAGCA CCGGCCCGAC GTCGTTTTTC TGGACATTCA GATGCCCGAG
CTGGATGGAT TCGCCGTGCT GCGCGAGGTG TGGCCGCACC ATCAGCCATT TGTCGTGTTC
ACGACCGCAT TCGACCAGTA TGCATTGCGT GCATTCGAGG TGAATGCAAT CGATTATCTG
CTCAAACCTT TCGACGAAAT CCGCTTTCAC CAGTCGCTGG GGAGGCTGAA AGAGCGGCTC
AGCCAGAAGT CGCAGCCGCG CATTGAAGAA CTGGTGAACA ACCTGCTTCG CGAACAGAAG
GATAAGGAAG AAAATTACCT CCAACGGTTG CTCGTGAAGG AAGCGGGGAA AATGTACCTG
GTCAAAACGG ACGATATCAC GCATTTCTCG GCGGATGGAA ACTACATTTC CGTTTACACC
TTGCAGAAGA AGGTTTATAC GGTTTACGAA AGCCTGGGCA GCCTCGAAAG CCGCCTCGAT
CCGGCGGTCA TGATCCGCGT CGGCCGCTCC AACATCGTGA ATATGAATTT CATATCCGAG
CTGGAAACGT ACTTCAACGG CGAGTACATT ATCCACCTGT CCACGGGCGA AAAAGTGAAA
TGGACACGTG GTTACCGCGA CAATATCAAG GCGTTTATCA CCAAAATGGG GTAA
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| Protein sequence | MKYRCLIIDD EVLARDVIRT FVQHDHSIEI TDEAANGSEA VVKILQHRPD VVFLDIQMPE
LDGFAVLREV WPHHQPFVVF TTAFDQYALR AFEVNAIDYL LKPFDEIRFH QSLGRLKERL
SQKSQPRIEE LVNNLLREQK DKEENYLQRL LVKEAGKMYL VKTDDITHFS ADGNYISVYT
LQKKVYTVYE SLGSLESRLD PAVMIRVGRS NIVNMNFISE LETYFNGEYI IHLSTGEKVK
WTRGYRDNIK AFITKMG
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