More than 300 homologs were found in PanDaTox collection
for query gene Shew_0706 on replicon NC_009092
Organism: Shewanella loihica PV-4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009092  Shew_0706  short-chain dehydrogenase/reductase SDR  100 
 
 
225 aa  461  1e-129  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_3800  short-chain dehydrogenase/reductase SDR  68.12 
 
 
225 aa  295  3e-79  Shewanella baltica OS223  Bacteria  hitchhiker  0.0000125845  normal 
 
 
-
 
NC_009665  Shew185_3856  short-chain dehydrogenase/reductase SDR  68.12 
 
 
225 aa  295  3e-79  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3982  short-chain dehydrogenase/reductase SDR  67.69 
 
 
225 aa  294  8e-79  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0468  short-chain dehydrogenase/reductase SDR  67.69 
 
 
225 aa  285  2.9999999999999996e-76  Shewanella baltica OS155  Bacteria  decreased coverage  0.00000583805  n/a   
 
 
-
 
NC_009438  Sputcn32_3349  short-chain dehydrogenase/reductase SDR  66.96 
 
 
225 aa  280  2e-74  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_2183  putative short-chain dehydrogenase  60.62 
 
 
221 aa  275  6e-73  Shewanella sediminis HAW-EB3  Bacteria  normal  0.766621  normal 
 
 
-
 
NC_009901  Spea_0532  short-chain dehydrogenase/reductase SDR  62.39 
 
 
220 aa  273  2.0000000000000002e-72  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00000466004  n/a   
 
 
-
 
NC_008577  Shewana3_0509  short-chain dehydrogenase/reductase SDR  65.22 
 
 
225 aa  267  8e-71  Shewanella sp. ANA-3  Bacteria  normal  0.832516  normal 
 
 
-
 
NC_004347  SO_0510  short chain dehydrogenase/reductase family oxidoreductase  66.09 
 
 
225 aa  266  2e-70  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009783  VIBHAR_03631  hypothetical protein  59.11 
 
 
221 aa  264  8e-70  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008345  Sfri_2454  short-chain dehydrogenase/reductase SDR  56.96 
 
 
225 aa  259  2e-68  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_0509  short-chain dehydrogenase/reductase SDR  65.22 
 
 
225 aa  257  9e-68  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3522  short-chain dehydrogenase/reductase SDR  65.22 
 
 
225 aa  257  9e-68  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_002433  putative short-chain dehydrogenase  57.78 
 
 
221 aa  250  1e-65  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_1876  short-chain dehydrogenase/reductase SDR  54.78 
 
 
226 aa  234  7e-61  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_0718  short-chain dehydrogenase/reductase SDR  32.89 
 
 
263 aa  101  1e-20  Methylobacterium populi BJ001  Bacteria  normal  0.520585  normal 
 
 
-
 
NC_009485  BBta_3264  putative oxidoreductase protein  33.33 
 
 
264 aa  100  2e-20  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.724633  normal 
 
 
-
 
NC_010172  Mext_0209  short-chain dehydrogenase/reductase SDR  32.03 
 
 
262 aa  95.1  7e-19  Methylobacterium extorquens PA1  Bacteria  normal  0.128983  normal 
 
 
-
 
NC_014165  Tbis_0964  short-chain dehydrogenase/reductase SDR  30.13 
 
 
227 aa  94.4  1e-18  Thermobispora bispora DSM 43833  Bacteria  normal  0.0180181  normal  0.277757 
 
 
-
 
NC_008726  Mvan_6051  short chain dehydrogenase  29.52 
 
 
221 aa  94.4  1e-18  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0202908  normal  0.993323 
 
 
-
 
NC_009338  Mflv_0854  short chain dehydrogenase  30.7 
 
 
225 aa  94.4  1e-18  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0159157 
 
 
-
 
NC_011757  Mchl_0153  short-chain dehydrogenase/reductase SDR  31.6 
 
 
262 aa  90.9  1e-17  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.418257  normal  0.135019 
 
 
-
 
NC_009484  Acry_1087  short-chain dehydrogenase/reductase SDR  33.87 
 
 
286 aa  91.3  1e-17  Acidiphilium cryptum JF-5  Bacteria  normal  0.252629  n/a   
 
 
-
 
NC_013131  Caci_3280  short-chain dehydrogenase/reductase SDR  31.73 
 
 
232 aa  90.9  2e-17  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.798057  normal 
 
 
-
 
NC_007908  Rfer_0310  short-chain dehydrogenase/reductase SDR  35.98 
 
 
284 aa  89.7  3e-17  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_012792  Vapar_6207  short-chain dehydrogenase/reductase SDR  33.86 
 
 
277 aa  90.1  3e-17  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010816  BLD_0416  short-chain alcohol dehydrogenase  29.39 
 
 
235 aa  89  5e-17  Bifidobacterium longum DJO10A  Bacteria  normal  0.279959  n/a   
 
 
-
 
NC_009052  Sbal_3370  short-chain dehydrogenase/reductase SDR  31.86 
 
 
248 aa  87.8  1e-16  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_4073  short-chain dehydrogenase/reductase SDR  30.88 
 
 
252 aa  87  2e-16  Marinomonas sp. MWYL1  Bacteria  normal  0.576341  normal 
 
 
-
 
NC_010506  Swoo_1668  short-chain dehydrogenase/reductase SDR  32.79 
 
 
251 aa  87.4  2e-16  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_3000  short-chain dehydrogenase/reductase SDR  31.92 
 
 
241 aa  87  2e-16  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_5157  short-chain dehydrogenase/reductase SDR  27.43 
 
 
224 aa  87  2e-16  Spirosoma linguale DSM 74  Bacteria  normal  0.0425184  normal  0.202978 
 
 
-
 
NC_013161  Cyan8802_4341  short-chain dehydrogenase/reductase SDR  24.34 
 
 
236 aa  86.7  3e-16  Cyanothece sp. PCC 8802  Bacteria  normal  0.157663  normal 
 
 
-
 
NC_009523  RoseRS_3145  short-chain dehydrogenase/reductase SDR  31.65 
 
 
535 aa  86.7  3e-16  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.61705 
 
 
-
 
NC_011726  PCC8801_4281  short-chain dehydrogenase/reductase SDR  24.34 
 
 
236 aa  86.7  3e-16  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007511  Bcep18194_B1706  Short-chain dehydrogenase/reductase SDR  29.96 
 
 
266 aa  85.9  4e-16  Burkholderia sp. 383  Bacteria  normal  0.951732  normal 
 
 
-
 
NC_007777  Francci3_0348  short-chain dehydrogenase/reductase SDR  27.63 
 
 
280 aa  85.1  7e-16  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A1901  Short-chain dehydrogenase/reductase SDR  31.71 
 
 
266 aa  85.1  8e-16  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_24130  short-chain alcohol dehydrogenase  30.94 
 
 
266 aa  84.7  9e-16  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.969986 
 
 
-
 
NC_006274  BCZK3889  short chain dehydrogenase/reductase family oxidoreductase  28.79 
 
 
264 aa  84.3  0.000000000000001  Bacillus cereus E33L  Bacteria  normal  0.674087  n/a   
 
 
-
 
NC_014165  Tbis_0493  short-chain dehydrogenase/reductase SDR  30.63 
 
 
250 aa  84.3  0.000000000000001  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_010803  Clim_2370  short-chain dehydrogenase/reductase SDR  26.89 
 
 
253 aa  84.3  0.000000000000001  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_1275  short-chain dehydrogenase/reductase SDR  31.94 
 
 
271 aa  84.7  0.000000000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_0351  short-chain dehydrogenase/reductase SDR  30.49 
 
 
291 aa  84  0.000000000000002  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_1182  3-ketoacyl-(acyl-carrier-protein) reductase  30.22 
 
 
238 aa  84  0.000000000000002  Geobacillus sp. WCH70  Bacteria  normal  0.049347  n/a   
 
 
-
 
NC_007952  Bxe_B2664  putative short-chain type dehydrogenase/reductase  32.49 
 
 
255 aa  84  0.000000000000002  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_7025  short chain dehydrogenase  27.56 
 
 
229 aa  84  0.000000000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_6941  short-chain dehydrogenase/reductase SDR  32.11 
 
 
251 aa  83.6  0.000000000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_3945  short-chain dehydrogenase/reductase SDR  32.97 
 
 
264 aa  82.8  0.000000000000004  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_1096  short-chain dehydrogenase/reductase SDR  31.41 
 
 
256 aa  82.8  0.000000000000004  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_1117  short-chain dehydrogenase/reductase SDR  31.49 
 
 
233 aa  82.8  0.000000000000004  Meiothermus ruber DSM 1279  Bacteria  decreased coverage  0.000000223483  normal  0.996665 
 
 
-
 
NC_009338  Mflv_0138  short-chain dehydrogenase/reductase SDR  32.35 
 
 
273 aa  82.8  0.000000000000004  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_2442  putative short-chain dehydrogenase  26.55 
 
 
231 aa  82.4  0.000000000000005  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.198493 
 
 
-
 
NC_010681  Bphyt_1098  short-chain dehydrogenase/reductase SDR  29.74 
 
 
249 aa  82.4  0.000000000000005  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010627  Bphy_7637  short-chain dehydrogenase/reductase SDR  24.58 
 
 
251 aa  82  0.000000000000006  Burkholderia phymatum STM815  Bacteria  normal  normal  0.897824 
 
 
-
 
NC_013730  Slin_0085  short-chain dehydrogenase/reductase SDR  29.24 
 
 
250 aa  82.4  0.000000000000006  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_2717  short chain dehydrogenase  29.67 
 
 
276 aa  82  0.000000000000006  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_009714  CHAB381_0075  3-oxoacyl-[acyl-carrier protein] reductase  26.51 
 
 
212 aa  82  0.000000000000006  Campylobacter hominis ATCC BAA-381  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_3507  short-chain dehydrogenase/reductase SDR  30.15 
 
 
355 aa  82  0.000000000000007  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_2639  short-chain dehydrogenase/reductase SDR  30.73 
 
 
238 aa  81.6  0.000000000000008  Rhodothermus marinus DSM 4252  Bacteria  normal  0.37123  n/a   
 
 
-
 
NC_013730  Slin_4558  short-chain dehydrogenase/reductase SDR  27.73 
 
 
240 aa  81.6  0.000000000000009  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.00293136  normal 
 
 
-
 
NC_005945  BAS4042  short chain dehydrogenase/reductase family oxidoreductase  28.28 
 
 
264 aa  80.9  0.00000000000001  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_3881  oxidoreductase, short-chain dehydrogenase/reductase  28.28 
 
 
264 aa  81.3  0.00000000000001  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_0016  short-chain dehydrogenase/reductase SDR  30.6 
 
 
231 aa  81.3  0.00000000000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_2186  3-ketoacyl-(acyl-carrier-protein) reductase  24.65 
 
 
241 aa  80.9  0.00000000000001  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A4268  oxidoreductase, short-chain dehydrogenase/reductase family  28.28 
 
 
264 aa  80.9  0.00000000000001  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_4357  short chain dehydrogenase/reductase family oxidoreductase  28.28 
 
 
264 aa  80.9  0.00000000000001  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_1331  short-chain dehydrogenase/reductase SDR  30 
 
 
332 aa  81.3  0.00000000000001  Methylobacterium populi BJ001  Bacteria  normal  0.261589  normal  0.281891 
 
 
-
 
NC_008061  Bcen_4061  short-chain dehydrogenase/reductase SDR  29.02 
 
 
281 aa  80.9  0.00000000000001  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.786818  n/a   
 
 
-
 
NC_013730  Slin_1686  short-chain dehydrogenase/reductase SDR  30.94 
 
 
269 aa  81.3  0.00000000000001  Spirosoma linguale DSM 74  Bacteria  normal  0.292744  normal 
 
 
-
 
NC_011884  Cyan7425_5218  short-chain dehydrogenase/reductase SDR  25.11 
 
 
236 aa  81.3  0.00000000000001  Cyanothece sp. PCC 7425  Bacteria  normal  0.901767  normal 
 
 
-
 
NC_008543  Bcen2424_4305  short-chain dehydrogenase/reductase SDR  29.02 
 
 
281 aa  80.9  0.00000000000001  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.699263 
 
 
-
 
NC_013131  Caci_5627  short-chain dehydrogenase/reductase SDR  31.89 
 
 
282 aa  81.3  0.00000000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.193827 
 
 
-
 
NC_003909  BCE_4205  short chain dehydrogenase/reductase family oxidoreductase  28.28 
 
 
264 aa  80.5  0.00000000000002  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_0767  short-chain dehydrogenase/reductase SDR  31.02 
 
 
330 aa  80.5  0.00000000000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.415615 
 
 
-
 
NC_011663  Sbal223_2174  short-chain dehydrogenase/reductase SDR  31.31 
 
 
261 aa  80.1  0.00000000000002  Shewanella baltica OS223  Bacteria  normal  0.30567  hitchhiker  0.00567391 
 
 
-
 
NC_007413  Ava_4667  Short-chain dehydrogenase/reductase SDR  25.99 
 
 
234 aa  80.1  0.00000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_011773  BCAH820_4158  oxidoreductase, short-chain dehydrogenase/reductase family  28.28 
 
 
264 aa  80.9  0.00000000000002  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_014158  Tpau_4205  short-chain dehydrogenase/reductase SDR  26.55 
 
 
225 aa  80.1  0.00000000000002  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_0388  short-chain dehydrogenase/reductase SDR  28.14 
 
 
269 aa  80.5  0.00000000000002  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.14599 
 
 
-
 
NC_007948  Bpro_0516  short-chain dehydrogenase/reductase SDR  31.89 
 
 
249 aa  80.1  0.00000000000002  Polaromonas sp. JS666  Bacteria  normal  0.875683  normal 
 
 
-
 
NC_013159  Svir_33490  short-chain alcohol dehydrogenase  27.85 
 
 
247 aa  80.1  0.00000000000002  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.343117  normal  0.392445 
 
 
-
 
NC_009720  Xaut_1294  short-chain dehydrogenase/reductase SDR  31.28 
 
 
266 aa  80.1  0.00000000000002  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_3139  short-chain dehydrogenase/reductase SDR  28.33 
 
 
251 aa  80.5  0.00000000000002  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.295469  n/a   
 
 
-
 
NC_014230  CA2559_04715  Short-chain dehydrogenase/reductase SDR  27.04 
 
 
249 aa  80.5  0.00000000000002  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.863639  n/a   
 
 
-
 
NC_007511  Bcep18194_B0244  Short-chain dehydrogenase/reductase SDR  30.21 
 
 
291 aa  79.7  0.00000000000003  Burkholderia sp. 383  Bacteria  normal  normal  0.864634 
 
 
-
 
NC_007794  Saro_1811  short-chain dehydrogenase/reductase SDR  30 
 
 
240 aa  79.7  0.00000000000003  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.300255  n/a   
 
 
-
 
NC_008025  Dgeo_0970  short-chain dehydrogenase/reductase SDR  25.11 
 
 
236 aa  79.7  0.00000000000003  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.0563281  normal  0.507807 
 
 
-
 
NC_010338  Caul_3460  short-chain dehydrogenase/reductase SDR  30.29 
 
 
269 aa  79.7  0.00000000000003  Caulobacter sp. K31  Bacteria  normal  0.590645  normal 
 
 
-
 
NC_009664  Krad_2814  short-chain dehydrogenase/reductase SDR  31.53 
 
 
260 aa  79.7  0.00000000000003  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.563613  normal 
 
 
-
 
NC_012029  Hlac_0964  short-chain dehydrogenase/reductase SDR  29.35 
 
 
306 aa  79.3  0.00000000000004  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  normal 
 
 
-
 
NC_004578  PSPTO_1864  oxidoreductase, short chain dehydrogenase/reductase family  30.05 
 
 
262 aa  79.7  0.00000000000004  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_5451  short-chain dehydrogenase/reductase SDR  30.94 
 
 
281 aa  79.7  0.00000000000004  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.255746 
 
 
-
 
NC_010681  Bphyt_2392  short-chain dehydrogenase/reductase SDR  28.93 
 
 
255 aa  79.3  0.00000000000004  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.432373 
 
 
-
 
NC_007513  Syncc9902_1352  oxidoreductase  30.89 
 
 
275 aa  79.7  0.00000000000004  Synechococcus sp. CC9902  Bacteria  normal  0.904457  n/a   
 
 
-
 
NC_008009  Acid345_2262  short-chain dehydrogenase/reductase SDR  27.68 
 
 
244 aa  79.3  0.00000000000004  Candidatus Koribacter versatilis Ellin345  Bacteria  hitchhiker  0.0000989308  normal 
 
 
-
 
NC_010515  Bcenmc03_3212  short-chain dehydrogenase/reductase SDR  29.46 
 
 
266 aa  79.3  0.00000000000004  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.177624  normal 
 
 
-
 
NC_009436  Ent638_1490  short-chain dehydrogenase/reductase SDR  32.11 
 
 
239 aa  79.3  0.00000000000004  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_4199  short-chain dehydrogenase/reductase SDR  28.57 
 
 
266 aa  79.7  0.00000000000004  Burkholderia ambifaria MC40-6  Bacteria  normal  0.308915  normal  0.0922746 
 
 
-
 
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