| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3856 |
|---|
| Symbol | |
|---|
| ID | 5373166 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 4573488 |
|---|
| End bp | 4574165 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640832117 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001368043 |
|---|
| Protein GI | 153002362 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATATTAA TTACCGGCGC CAGCAGTGGT TTAGGCGCGG CGCTAGCATC GCTCTACGCC
AAAGAAAATG AACCGCTAAC ACTCACAGGC CGCAATGCCG AGCGTCTACA AACCGTCGCC
AATGCATTAA CGCCCTTCTC CAACAAGCCT ATCGCCGCGA TCACCGCCGA TCTCGCCAGT
GAATCGAGTC TCGAAGCCCT GTTCGATGGC CTGACACAAG CCCCTAAAAC CGTGATCCAC
TGCGCGGGCA GTGGCTACTT TGGTGCGATT GAAACCCAAA CTGCCAGCGA TATCCACAGC
CTACTCAATA ACAATGTCAC CTCAACGATT CTGTTGGTGC GCGAACTAGT GAAACGCTAT
AAAGATCAAG CGGTCACTGT GGTTGTGGTC ATGTCCACCG CAGCGCTTGC CGCCAAAGCA
GGAGAATCCA CTTACTGCGC GGCAAAATGG GCGGTACGAG GATTTATCGA GTCGGTGAGA
TTAGAGCTTA AACAAAGCCC AATGAAGTTG ATTGCCGTGT ATCCCGGCGG CATGGATACA
GGCTTTTGGC CAAGTAGCGG TAAAGCATTA GATACCTCAA GTTTTATGTC CGCCGATGAA
GCGGCTGGCA TGCTCAAGCA AGCATTAATC GCCACCCAGC ACGGTTATAT TGCCGATATC
ACCATACAAA GAGCCTAG
|
|---|
| Protein sequence | MILITGASSG LGAALASLYA KENEPLTLTG RNAERLQTVA NALTPFSNKP IAAITADLAS
ESSLEALFDG LTQAPKTVIH CAGSGYFGAI ETQTASDIHS LLNNNVTSTI LLVRELVKRY
KDQAVTVVVV MSTAALAAKA GESTYCAAKW AVRGFIESVR LELKQSPMKL IAVYPGGMDT
GFWPSSGKAL DTSSFMSADE AAGMLKQALI ATQHGYIADI TIQRA
|
|---|
| |