Gene Caci_5627 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_5627 
Symbol 
ID8336987 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp6487159 
End bp6488007 
Gene Length849 bp 
Protein Length282 aa 
Translation table11 
GC content72% 
IMG OID644958731 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_003116327 
Protein GI256394763 
COG category[R] General function prediction only 
COG ID[COG0300] Short-chain dehydrogenases of various substrate specificities 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.193827 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGGCGC CGTTCCGCTT CAACGGCGCG GTCGCGGTGG TGACCGGCGC CGCCGGCGGG 
ATGGGGGAGC AGCTCGCCTA CGGCTTGGCG CTGCGCGGCA CGCACCTGGT GCTGGTGGAC
CGCGATGCCG AGCGGCTGAC GACGGTTGCC GCGACCGTGA CGCGGCGGCG TCCGGAAACC
AGAGTGCGGA CCTTCGTCGC GGACCTGTCC GACGCCGCCG CGGTCGGCAA GCTCGCCGCC
GACATCCTCG ACGCCGAACC GGTTCTCAAC CTGCTGATCA ACAACGCCGG CGTGGCGCTG
GCGGGCACGT TCGCCGAGAC CTCCGCCGAG GAGTTCGACT GGGTGATGGC GGTCAACTTC
GCCGCCCCGG TGGCCTTGAC GCGTGCGCTG CTGCCCCGGC TGCGTGAGTC GGACGGCAGC
CATGTGGTGA ACACCTCCAG CCTGTTCGGC TTGATCGCCC CGCCCGGGCA GAGCGCGTAT
TCGGCCAGCA AGTTCGCCTT GCGCGGCTTC ACCGAGGCGC TGCGCCACGA GCTGACCGGC
GAGGTCGGCG TGACGTGTGT GCACCCCGGC GGCATCAAGA CCCGCATCGC GCTGGACGCG
CGCGTCGCCG CCGGCGCCGA CCAGGAGCAG AGCGTGAAGG CGATGCGCGC CTTCACCAAG
GTCCTGACCT ACCCCGCCGA CCGCGCCGCG ACCCGGATCA TCGAGGGCGT GCGGCAGCGG
CGCGGCAGGG TGCTGATCGC GCTGTCGGCG CGCGTGCCGG ACGTGCTGGC CCGGCTGTTC
CCCGCGACGT ATTGGGATCT GTTCGTGCGG GTGAACCCGC GTGCCGGTGA CCGGCGTCCG
CGCCGCTAG
 
Protein sequence
MMAPFRFNGA VAVVTGAAGG MGEQLAYGLA LRGTHLVLVD RDAERLTTVA ATVTRRRPET 
RVRTFVADLS DAAAVGKLAA DILDAEPVLN LLINNAGVAL AGTFAETSAE EFDWVMAVNF
AAPVALTRAL LPRLRESDGS HVVNTSSLFG LIAPPGQSAY SASKFALRGF TEALRHELTG
EVGVTCVHPG GIKTRIALDA RVAAGADQEQ SVKAMRAFTK VLTYPADRAA TRIIEGVRQR
RGRVLIALSA RVPDVLARLF PATYWDLFVR VNPRAGDRRP RR