More than 300 homologs were found in PanDaTox collection
for query gene Sde_2442 on replicon NC_007912
Organism: Saccharophagus degradans 2-40



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007912  Sde_2442  putative short-chain dehydrogenase  100 
 
 
231 aa  486  1e-136  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.198493 
 
 
-
 
NC_008709  Ping_0223  short-chain dehydrogenase/reductase SDR  34.07 
 
 
227 aa  129  3e-29  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_007604  Synpcc7942_1596  short chain dehydrogenase  30.54 
 
 
245 aa  111  1.0000000000000001e-23  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.184756 
 
 
-
 
NC_009656  PSPA7_3796  putative short-chain dehydrogenase  31.72 
 
 
295 aa  108  9.000000000000001e-23  Pseudomonas aeruginosa PA7  Bacteria  normal  0.205058  n/a   
 
 
-
 
NC_008463  PA14_44570  putative short-chain dehydrogenase  30.84 
 
 
295 aa  108  9.000000000000001e-23  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.30545 
 
 
-
 
NC_013501  Rmar_2639  short-chain dehydrogenase/reductase SDR  30.64 
 
 
238 aa  107  1e-22  Rhodothermus marinus DSM 4252  Bacteria  normal  0.37123  n/a   
 
 
-
 
NC_012856  Rpic12D_3013  short-chain dehydrogenase/reductase SDR  33.16 
 
 
296 aa  106  4e-22  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_3360  short-chain dehydrogenase/reductase SDR  33.16 
 
 
296 aa  105  5e-22  Ralstonia pickettii 12J  Bacteria  normal  0.0880635  normal 
 
 
-
 
NC_007912  Sde_0091  putative serine dehydrogenase  29.8 
 
 
252 aa  103  2e-21  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
CP001800  Ssol_2000  short-chain dehydrogenase/reductase SDR  28.57 
 
 
247 aa  102  3e-21  Sulfolobus solfataricus 98/2  Archaea  normal  n/a   
 
 
-
 
NC_005957  BT9727_3881  oxidoreductase, short-chain dehydrogenase/reductase  30.85 
 
 
264 aa  103  3e-21  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011738  PCC7424_5709  short-chain dehydrogenase/reductase SDR  34.33 
 
 
347 aa  103  3e-21  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_010184  BcerKBAB4_3967  short-chain dehydrogenase/reductase SDR  31.77 
 
 
264 aa  103  3e-21  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0321162  n/a   
 
 
-
 
NC_007614  Nmul_A0736  Short-chain dehydrogenase/reductase SDR  29.92 
 
 
272 aa  102  4e-21  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_4539  short-chain dehydrogenase/reductase SDR  32.85 
 
 
276 aa  102  4e-21  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_0911  short chain dehydrogenase  30.48 
 
 
242 aa  102  5e-21  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_0938  short chain dehydrogenase  30.48 
 
 
242 aa  102  5e-21  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_0391  short-chain dehydrogenase/reductase SDR  31.91 
 
 
279 aa  102  6e-21  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.319463  normal 
 
 
-
 
NC_011773  BCAH820_4158  oxidoreductase, short-chain dehydrogenase/reductase family  30.32 
 
 
264 aa  101  8e-21  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_005945  BAS4042  short chain dehydrogenase/reductase family oxidoreductase  30.32 
 
 
264 aa  101  8e-21  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_4357  short chain dehydrogenase/reductase family oxidoreductase  30.32 
 
 
264 aa  101  8e-21  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A4268  oxidoreductase, short-chain dehydrogenase/reductase family  30.32 
 
 
264 aa  101  8e-21  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_4205  short chain dehydrogenase/reductase family oxidoreductase  30.32 
 
 
264 aa  101  1e-20  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A0101  Short-chain dehydrogenase/reductase SDR  32.79 
 
 
272 aa  101  1e-20  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK3889  short chain dehydrogenase/reductase family oxidoreductase  29.79 
 
 
264 aa  100  2e-20  Bacillus cereus E33L  Bacteria  normal  0.674087  n/a   
 
 
-
 
NC_013757  Gobs_2096  short-chain dehydrogenase/reductase SDR  32.79 
 
 
276 aa  100  2e-20  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0706  short-chain dehydrogenase/reductase SDR  29.44 
 
 
242 aa  100  2e-20  Rubrobacter xylanophilus DSM 9941  Bacteria  hitchhiker  0.00246779  n/a   
 
 
-
 
NC_008243  Meso_4514  short-chain dehydrogenase/reductase SDR  29.11 
 
 
257 aa  100  2e-20  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_0668  short-chain dehydrogenase/reductase SDR  32.16 
 
 
234 aa  100  3e-20  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_2831  short-chain dehydrogenase/reductase SDR  32.46 
 
 
264 aa  100  3e-20  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009068  PICST_80053  NADP(+)-dependent dehydrogenase acts on serine, L-allo-threonine, and other 3-hydroxy acids  36.79 
 
 
269 aa  99.4  4e-20  Scheffersomyces stipitis CBS 6054  Eukaryota  normal  normal 
 
 
-
 
NC_013411  GYMC61_0353  short-chain dehydrogenase/reductase SDR  31.16 
 
 
262 aa  97.8  1e-19  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009439  Pmen_1266  short-chain dehydrogenase/reductase SDR  31.18 
 
 
278 aa  98.2  1e-19  Pseudomonas mendocina ymp  Bacteria  normal  0.343225  normal 
 
 
-
 
NC_010681  Bphyt_2007  short chain dehydrogenase  32.39 
 
 
276 aa  98.2  1e-19  Burkholderia phytofirmans PsJN  Bacteria  normal  0.372157  normal  0.691247 
 
 
-
 
NC_007948  Bpro_3524  short-chain dehydrogenase/reductase SDR  34.27 
 
 
272 aa  97.4  1e-19  Polaromonas sp. JS666  Bacteria  normal  0.382394  normal  0.103507 
 
 
-
 
NC_011071  Smal_1687  short chain dehydrogenase  31.6 
 
 
279 aa  97.8  1e-19  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_5847  short-chain dehydrogenase/reductase SDR  31.19 
 
 
281 aa  98.2  1e-19  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_2206  short-chain dehydrogenase/reductase SDR  30.43 
 
 
261 aa  97.4  1e-19  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.0587036  normal  0.882414 
 
 
-
 
NC_009654  Mmwyl1_4482  short-chain dehydrogenase/reductase SDR  35.14 
 
 
244 aa  97.1  2e-19  Marinomonas sp. MWYL1  Bacteria  normal  hitchhiker  0.00000000123251 
 
 
-
 
NC_014230  CA2559_04715  Short-chain dehydrogenase/reductase SDR  30.71 
 
 
249 aa  97.1  2e-19  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.863639  n/a   
 
 
-
 
NC_011683  PHATRDRAFT_38394  predicted protein  31.08 
 
 
276 aa  97.1  2e-19  Phaeodactylum tricornutum CCAP 1055/1  Eukaryota  hitchhiker  0.00142595  n/a   
 
 
-
 
NC_011725  BCB4264_A4244  oxidoreductase, short-chain dehydrogenase/reductase family  30.32 
 
 
264 aa  97.1  2e-19  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_008527  LACR_0824  3-ketoacyl-(acyl-carrier-protein) reductase  33.33 
 
 
243 aa  97.1  2e-19  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_0045  short-chain dehydrogenase/reductase SDR  27.39 
 
 
256 aa  96.7  2e-19  Psychromonas ingrahamii 37  Bacteria  normal  hitchhiker  0.00292404 
 
 
-
 
NC_008699  Noca_2917  short chain dehydrogenase  33.88 
 
 
665 aa  96.7  2e-19  Nocardioides sp. JS614  Bacteria  normal  0.0126943  n/a   
 
 
-
 
NC_011726  PCC8801_4281  short-chain dehydrogenase/reductase SDR  29.91 
 
 
236 aa  96.3  3e-19  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008148  Rxyl_0016  short-chain dehydrogenase/reductase SDR  29.34 
 
 
260 aa  96.3  3e-19  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_4341  short-chain dehydrogenase/reductase SDR  29.91 
 
 
236 aa  96.3  3e-19  Cyanothece sp. PCC 8802  Bacteria  normal  0.157663  normal 
 
 
-
 
NC_009439  Pmen_2621  short-chain dehydrogenase/reductase SDR  31.44 
 
 
295 aa  96.7  3e-19  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.786359 
 
 
-
 
NC_009720  Xaut_0982  short-chain dehydrogenase/reductase SDR  31.28 
 
 
268 aa  96.3  4e-19  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_2585  short-chain dehydrogenase/reductase SDR  33.87 
 
 
259 aa  95.9  4e-19  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_010085  Nmar_0044  short-chain dehydrogenase/reductase SDR  31.51 
 
 
264 aa  95.9  4e-19  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_008312  Tery_3453  short-chain dehydrogenase/reductase SDR  31.75 
 
 
267 aa  96.3  4e-19  Trichodesmium erythraeum IMS101  Bacteria  normal  0.282255  normal 
 
 
-
 
NC_010803  Clim_0189  short-chain dehydrogenase/reductase SDR  33.16 
 
 
267 aa  95.9  5e-19  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.00000709968  n/a   
 
 
-
 
NC_011772  BCG9842_B0992  oxidoreductase, short-chain dehydrogenase/reductase family  29.79 
 
 
264 aa  95.9  5e-19  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_009632  SaurJH1_2555  short-chain dehydrogenase/reductase SDR  27.95 
 
 
231 aa  95.5  7e-19  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.459049  n/a   
 
 
-
 
NC_009487  SaurJH9_2505  short-chain dehydrogenase/reductase SDR  27.95 
 
 
231 aa  95.5  7e-19  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A2202  short chain dehydrogenase  31.46 
 
 
276 aa  94.7  1e-18  Burkholderia xenovorans LB400  Bacteria  normal  0.516821  decreased coverage  0.00204142 
 
 
-
 
NC_013162  Coch_0498  short-chain dehydrogenase/reductase SDR  31.12 
 
 
273 aa  94.7  1e-18  Capnocytophaga ochracea DSM 7271  Bacteria  hitchhiker  0.000000406118  n/a   
 
 
-
 
NC_009767  Rcas_3066  short-chain dehydrogenase/reductase SDR  32.8 
 
 
273 aa  94  2e-18  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.172953  normal 
 
 
-
 
NC_009091  P9301_05611  short chain dehydrogenase  32.77 
 
 
244 aa  94  2e-18  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  0.713488  n/a   
 
 
-
 
NC_009943  Dole_2194  short-chain dehydrogenase/reductase SDR  28.09 
 
 
280 aa  94  2e-18  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.0155651  n/a   
 
 
-
 
NC_007802  Jann_1321  short-chain dehydrogenase/reductase SDR  31.38 
 
 
282 aa  93.6  2e-18  Jannaschia sp. CCS1  Bacteria  normal  0.889604  normal 
 
 
-
 
NC_014158  Tpau_1209  short-chain dehydrogenase/reductase SDR  32.12 
 
 
275 aa  94  2e-18  Tsukamurella paurometabola DSM 20162  Bacteria  hitchhiker  0.00962961  n/a   
 
 
-
 
NC_009720  Xaut_2977  short-chain dehydrogenase/reductase SDR  31.63 
 
 
268 aa  94  2e-18  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.690113 
 
 
-
 
NC_014248  Aazo_3598  short-chain dehydrogenase/reductase SDR  32.2 
 
 
238 aa  94  2e-18  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_5665  short-chain dehydrogenase/reductase SDR  31.18 
 
 
275 aa  94  2e-18  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_1880  short-chain dehydrogenase/reductase SDR  29.63 
 
 
276 aa  93.6  2e-18  Gordonia bronchialis DSM 43247  Bacteria  normal  0.138576  n/a   
 
 
-
 
NC_009439  Pmen_2896  short-chain dehydrogenase/reductase SDR  27.92 
 
 
240 aa  94  2e-18  Pseudomonas mendocina ymp  Bacteria  normal  0.148916  normal 
 
 
-
 
NC_013061  Phep_3460  short-chain dehydrogenase/reductase SDR  28.63 
 
 
229 aa  93.2  3e-18  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.0481676 
 
 
-
 
NC_013037  Dfer_3922  short-chain dehydrogenase/reductase SDR  34.74 
 
 
250 aa  93.2  3e-18  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_0159  short-chain dehydrogenase/reductase SDR  27.69 
 
 
249 aa  92.8  4e-18  Caulobacter sp. K31  Bacteria  normal  0.410897  normal  0.168063 
 
 
-
 
NC_007952  Bxe_B1950  putative short-chain dehydrogenase/reductase SDR  31.15 
 
 
284 aa  92.8  4e-18  Burkholderia xenovorans LB400  Bacteria  normal  0.417893  normal  0.0791039 
 
 
-
 
NC_011661  Dtur_0425  short-chain dehydrogenase/reductase SDR  31.47 
 
 
241 aa  92.4  5e-18  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.116852  n/a   
 
 
-
 
NC_013730  Slin_0085  short-chain dehydrogenase/reductase SDR  34.38 
 
 
250 aa  92.8  5e-18  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_1799  short-chain dehydrogenase/reductase SDR  32.86 
 
 
273 aa  92  6e-18  Caulobacter sp. K31  Bacteria  normal  normal  0.01823 
 
 
-
 
NC_009485  BBta_6766  putative short-chain dehydrogenase  28.63 
 
 
279 aa  92  6e-18  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.353478  normal 
 
 
-
 
NC_007348  Reut_B5157  Short-chain dehydrogenase/reductase SDR  31.68 
 
 
271 aa  92  6e-18  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_5145  putative Short-chain dehydrogenase/reductase SDR  31.7 
 
 
267 aa  92  6e-18  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.645114  normal  0.0551529 
 
 
-
 
NC_013946  Mrub_1117  short-chain dehydrogenase/reductase SDR  29.18 
 
 
233 aa  92  6e-18  Meiothermus ruber DSM 1279  Bacteria  decreased coverage  0.000000223483  normal  0.996665 
 
 
-
 
NC_008255  CHU_2193  short chain dehydrogenase/reductase family oxidoreductase  29.39 
 
 
235 aa  92  7e-18  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  decreased coverage  0.00806787 
 
 
-
 
NC_007435  BURPS1710b_A2524  short chain dehydrogenase  30.65 
 
 
308 aa  91.7  8e-18  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1269  short chain dehydrogenase/reductase family oxidoreductase  30.65 
 
 
308 aa  91.7  8e-18  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_0559  short-chain dehydrogenase/reductase SDR  30.65 
 
 
308 aa  91.7  8e-18  Burkholderia mallei NCTC 10229  Bacteria  normal  0.0827865  n/a   
 
 
-
 
NC_013131  Caci_3565  short-chain dehydrogenase/reductase SDR  33.33 
 
 
244 aa  91.7  8e-18  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013743  Htur_2629  short-chain dehydrogenase/reductase SDR  30.29 
 
 
317 aa  91.7  8e-18  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_009075  BURPS668_A1346  short chain dehydrogenase/reductase family oxidoreductase  30.65 
 
 
308 aa  91.7  8e-18  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A1008  short chain dehydrogenase  30.65 
 
 
308 aa  91.7  8e-18  Burkholderia mallei NCTC 10247  Bacteria  normal  0.388516  n/a   
 
 
-
 
NC_010515  Bcenmc03_5625  short-chain dehydrogenase/reductase SDR  29.53 
 
 
309 aa  91.7  9e-18  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.285502  normal 
 
 
-
 
NC_008816  A9601_05911  short chain dehydrogenase  31.33 
 
 
244 aa  91.7  9e-18  Prochlorococcus marinus str. AS9601  Bacteria  normal  n/a   
 
 
-
 
NC_008061  Bcen_3693  short-chain dehydrogenase/reductase SDR  29.53 
 
 
309 aa  91.7  9e-18  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4675  short-chain dehydrogenase/reductase SDR  29.53 
 
 
309 aa  91.7  9e-18  Burkholderia cenocepacia HI2424  Bacteria  normal  0.396312  normal  0.215379 
 
 
-
 
NC_009523  RoseRS_1481  short-chain dehydrogenase/reductase SDR  27.88 
 
 
239 aa  91.3  1e-17  Roseiflexus sp. RS-1  Bacteria  normal  0.175599  normal 
 
 
-
 
NC_010002  Daci_0612  short-chain dehydrogenase/reductase SDR  30.09 
 
 
245 aa  91.3  1e-17  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_004116  SAG0348  3-ketoacyl-(acyl-carrier-protein) reductase  33.16 
 
 
244 aa  91.3  1e-17  Streptococcus agalactiae 2603V/R  Bacteria  normal  0.708158  n/a   
 
 
-
 
NC_013501  Rmar_0154  short-chain dehydrogenase/reductase SDR  29.75 
 
 
261 aa  91.3  1e-17  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1630  short-chain dehydrogenase/reductase SDR  31.02 
 
 
252 aa  91.3  1e-17  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009714  CHAB381_1376  NADP-dependent l-serine/l-allo-threonine dehydrogenase ydfg  28.63 
 
 
250 aa  91.3  1e-17  Campylobacter hominis ATCC BAA-381  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_0480  short-chain dehydrogenase/reductase SDR  28.93 
 
 
243 aa  91.3  1e-17  Shewanella baltica OS195  Bacteria  normal  0.853199  normal 
 
 
-
 
NC_011886  Achl_3010  short-chain dehydrogenase/reductase SDR  30.41 
 
 
276 aa  90.9  1e-17  Arthrobacter chlorophenolicus A6  Bacteria  n/a    decreased coverage  0.000215509 
 
 
-
 
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