Gene Sfri_2454 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_2454 
Symbol 
ID4279365 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp2922610 
End bp2923287 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content45% 
IMG OID638135250 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_751137 
Protein GI114563624 
COG category[R] General function prediction only 
COG ID[COG0300] Short-chain dehydrogenases of various substrate specificities 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTGTTA TTACCGGCGC GAGTAGTGGC TTAGGTGCTG CACTAACACA ACTGTATGCG 
GCAGAAAATC AGCCGTTATT GGTGACAGGT CGCAGTGAGC AAAAATTAGC AGATGTAATA 
GCTGGCCTAA CTCAGCCAGA GCAAAAAAAC GTGAAAACTT ACGCTGCTGA CTTATGTGTG 
GCCGAAGATG TCAGTGCATT ATTTTCGCGA TTACCAGCGC CGCCAAGCAA GGTTATTCAT 
TGTGCTGGCA GTGGTTATTT TGGCCCTATC GAACAACAAG CACCAGAAGC GATTAATCAG 
TTAATTCATA ACAATCTCAC TTCAAGCATT CTAGTGTTGC GTGAGCTTGT TAGTCGCTAT 
CGTGATCACA ACGTTACTGT CGTTGTGGTA ATGTCGACCG CAGCGCAAGC AGGCAAAGCA 
AATGAGTCGA CTTACTGTGC CGTAAAATGG GCCGTAAAGG GATTAGTTGA ATCGTTACGA 
TTAGAATTGA AAGGCAGCCC AATGAAATTG ATTGCGGTGT ATCCTGGAGG GATGGCAACG 
GACTTTTGGC AAACAAGTGG CAAAGACATT AATACATCAA GCTTTATGAC GGCAACAGAA 
GCCGCCACAA TGCTCAAGCA AGCCTTAATA CCGACAAAAC ATGGTTATGT CTCTGACATC 
ACCATTAACC GCGGTTAG
 
Protein sequence
MIVITGASSG LGAALTQLYA AENQPLLVTG RSEQKLADVI AGLTQPEQKN VKTYAADLCV 
AEDVSALFSR LPAPPSKVIH CAGSGYFGPI EQQAPEAINQ LIHNNLTSSI LVLRELVSRY 
RDHNVTVVVV MSTAAQAGKA NESTYCAVKW AVKGLVESLR LELKGSPMKL IAVYPGGMAT 
DFWQTSGKDI NTSSFMTATE AATMLKQALI PTKHGYVSDI TINRG