More than 300 homologs were found in PanDaTox collection
for query gene Sfri_2454 on replicon NC_008345
Organism: Shewanella frigidimarina NCIMB 400



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008345  Sfri_2454  short-chain dehydrogenase/reductase SDR  100 
 
 
225 aa  464  9.999999999999999e-131  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_2183  putative short-chain dehydrogenase  64.89 
 
 
221 aa  303  2.0000000000000002e-81  Shewanella sediminis HAW-EB3  Bacteria  normal  0.766621  normal 
 
 
-
 
NC_009901  Spea_0532  short-chain dehydrogenase/reductase SDR  64 
 
 
220 aa  290  8e-78  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00000466004  n/a   
 
 
-
 
NC_009665  Shew185_3856  short-chain dehydrogenase/reductase SDR  63.39 
 
 
225 aa  288  4e-77  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3800  short-chain dehydrogenase/reductase SDR  62.95 
 
 
225 aa  288  5.0000000000000004e-77  Shewanella baltica OS223  Bacteria  hitchhiker  0.0000125845  normal 
 
 
-
 
NC_009997  Sbal195_3982  short-chain dehydrogenase/reductase SDR  62.5 
 
 
225 aa  287  1e-76  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0468  short-chain dehydrogenase/reductase SDR  62.5 
 
 
225 aa  275  5e-73  Shewanella baltica OS155  Bacteria  decreased coverage  0.00000583805  n/a   
 
 
-
 
NC_009438  Sputcn32_3349  short-chain dehydrogenase/reductase SDR  62.22 
 
 
225 aa  269  2.9999999999999997e-71  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_0510  short chain dehydrogenase/reductase family oxidoreductase  61.78 
 
 
225 aa  261  8e-69  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009783  VIBHAR_03631  hypothetical protein  59.38 
 
 
221 aa  260  1e-68  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009092  Shew_0706  short-chain dehydrogenase/reductase SDR  56.96 
 
 
225 aa  259  2e-68  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_1876  short-chain dehydrogenase/reductase SDR  58.67 
 
 
226 aa  258  6e-68  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_002433  putative short-chain dehydrogenase  58.93 
 
 
221 aa  252  3e-66  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_0509  short-chain dehydrogenase/reductase SDR  60 
 
 
225 aa  252  3e-66  Shewanella sp. ANA-3  Bacteria  normal  0.832516  normal 
 
 
-
 
NC_008321  Shewmr4_0509  short-chain dehydrogenase/reductase SDR  60.44 
 
 
225 aa  243  9.999999999999999e-64  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3522  short-chain dehydrogenase/reductase SDR  60.44 
 
 
225 aa  243  9.999999999999999e-64  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_4735  short-chain dehydrogenase/reductase SDR  32.99 
 
 
262 aa  87  2e-16  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_010831  Cphamn1_0247  short-chain dehydrogenase/reductase SDR  29.95 
 
 
223 aa  86.3  3e-16  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_010816  BLD_0416  short-chain alcohol dehydrogenase  30.8 
 
 
235 aa  85.9  5e-16  Bifidobacterium longum DJO10A  Bacteria  normal  0.279959  n/a   
 
 
-
 
NC_009523  RoseRS_3145  short-chain dehydrogenase/reductase SDR  31.19 
 
 
535 aa  82.4  0.000000000000005  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.61705 
 
 
-
 
NC_004347  SO_4141  short chain dehydrogenase/reductase family oxidoreductase  29.57 
 
 
243 aa  82  0.000000000000006  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007347  Reut_A1901  Short-chain dehydrogenase/reductase SDR  28.24 
 
 
266 aa  81.3  0.00000000000001  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009727  CBUD_0471  short chain dehydrogenase  26.84 
 
 
258 aa  80.5  0.00000000000002  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_5157  short-chain dehydrogenase/reductase SDR  27.07 
 
 
224 aa  80.1  0.00000000000003  Spirosoma linguale DSM 74  Bacteria  normal  0.0425184  normal  0.202978 
 
 
-
 
NC_007947  Mfla_2644  short-chain dehydrogenase/reductase SDR  30.81 
 
 
247 aa  79.3  0.00000000000004  Methylobacillus flagellatus KT  Bacteria  normal  0.439694  normal 
 
 
-
 
NC_009523  RoseRS_0388  short-chain dehydrogenase/reductase SDR  28.34 
 
 
269 aa  79.3  0.00000000000004  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.14599 
 
 
-
 
NC_008148  Rxyl_3000  short-chain dehydrogenase/reductase SDR  29.9 
 
 
241 aa  79.7  0.00000000000004  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_0205  short-chain dehydrogenase/reductase SDR  27.39 
 
 
257 aa  79.3  0.00000000000005  Trichodesmium erythraeum IMS101  Bacteria  normal  0.76225  normal  0.242071 
 
 
-
 
NC_013061  Phep_0979  short-chain dehydrogenase/reductase SDR  32.98 
 
 
254 aa  78.6  0.00000000000007  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.495407 
 
 
-
 
NC_012912  Dd1591_2059  short-chain dehydrogenase/reductase SDR  29.8 
 
 
260 aa  78.6  0.00000000000008  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_008701  Pisl_1529  short-chain dehydrogenase/reductase SDR  31.67 
 
 
265 aa  77.8  0.0000000000001  Pyrobaculum islandicum DSM 4184  Archaea  normal  0.0206025  normal  0.910086 
 
 
-
 
NC_013501  Rmar_2639  short-chain dehydrogenase/reductase SDR  28.35 
 
 
238 aa  77  0.0000000000002  Rhodothermus marinus DSM 4252  Bacteria  normal  0.37123  n/a   
 
 
-
 
NC_013730  Slin_0086  short-chain dehydrogenase/reductase SDR  30.81 
 
 
272 aa  77  0.0000000000002  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_24130  short-chain alcohol dehydrogenase  30.43 
 
 
266 aa  76.6  0.0000000000003  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.969986 
 
 
-
 
NC_010506  Swoo_1668  short-chain dehydrogenase/reductase SDR  29.57 
 
 
251 aa  76.6  0.0000000000003  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_007512  Plut_2026  short chain dehydrogenase/reductase family oxidoreductase  26.46 
 
 
227 aa  76.6  0.0000000000003  Chlorobium luteolum DSM 273  Bacteria  normal  normal  0.293852 
 
 
-
 
NC_007513  Syncc9902_1632  short chain dehydrogenase  28.89 
 
 
235 aa  76.6  0.0000000000003  Synechococcus sp. CC9902  Bacteria  normal  n/a   
 
 
-
 
NC_010117  COXBURSA331_A1696  short chain dehydrogenase/reductase family oxidoreductase  26.32 
 
 
258 aa  76.3  0.0000000000004  Coxiella burnetii RSA 331  Bacteria  normal  0.817291  n/a   
 
 
-
 
NC_010552  BamMC406_5270  short-chain dehydrogenase/reductase SDR  30.41 
 
 
262 aa  76.3  0.0000000000004  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_3970  short-chain dehydrogenase/reductase SDR  31.41 
 
 
270 aa  76.3  0.0000000000004  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_1864  oxidoreductase, short chain dehydrogenase/reductase family  30.1 
 
 
262 aa  75.5  0.0000000000006  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_3566  short-chain dehydrogenase/reductase SDR  31.22 
 
 
269 aa  75.5  0.0000000000006  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.138362 
 
 
-
 
NC_010803  Clim_2374  short-chain dehydrogenase/reductase SDR  30.32 
 
 
256 aa  75.1  0.0000000000007  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_1067  short-chain dehydrogenase/reductase SDR  31.12 
 
 
258 aa  75.1  0.0000000000008  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_3280  short-chain dehydrogenase/reductase SDR  29.61 
 
 
232 aa  75.1  0.0000000000008  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.798057  normal 
 
 
-
 
NC_009727  CBUD_1145  short chain dehydrogenase  28.79 
 
 
321 aa  75.1  0.0000000000009  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_011059  Paes_0216  short-chain dehydrogenase/reductase SDR  29.47 
 
 
223 aa  75.1  0.0000000000009  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.209414  normal 
 
 
-
 
NC_010117  COXBURSA331_A1015  short chain dehydrogenase/reductase family oxidoreductase  28.79 
 
 
263 aa  74.3  0.000000000001  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_012858  Rleg_6849  short-chain dehydrogenase/reductase SDR  30.05 
 
 
269 aa  74.7  0.000000000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.674583 
 
 
-
 
NC_014248  Aazo_3599  short-chain dehydrogenase/reductase SDR  27.71 
 
 
256 aa  74.3  0.000000000001  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_2278  short-chain dehydrogenase/reductase SDR  29.06 
 
 
260 aa  74.7  0.000000000001  Enterobacter sp. 638  Bacteria  normal  normal  0.161761 
 
 
-
 
NC_013037  Dfer_3961  short-chain dehydrogenase/reductase SDR  25.22 
 
 
236 aa  74.3  0.000000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4040  Short-chain dehydrogenase/reductase SDR  29.86 
 
 
264 aa  73.6  0.000000000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.128419  normal  0.923094 
 
 
-
 
NC_007951  Bxe_A1744  short chain dehydrogenase  32.07 
 
 
275 aa  73.6  0.000000000002  Burkholderia xenovorans LB400  Bacteria  normal  0.324234  normal 
 
 
-
 
NC_008255  CHU_3621  short-chain dehydrogenase  28.5 
 
 
258 aa  73.9  0.000000000002  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_3183  short-chain dehydrogenase/reductase SDR  30.61 
 
 
260 aa  73.9  0.000000000002  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_3795  short-chain dehydrogenase/reductase SDR  28.07 
 
 
252 aa  73.2  0.000000000003  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.586754  n/a   
 
 
-
 
NC_003910  CPS_2158  glucose 1-dehydrogenase  29.74 
 
 
250 aa  73.2  0.000000000003  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_2032  short-chain dehydrogenase/reductase SDR  31.11 
 
 
268 aa  73.2  0.000000000003  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_0480  short-chain dehydrogenase/reductase SDR  26.56 
 
 
243 aa  73.6  0.000000000003  Shewanella baltica OS195  Bacteria  normal  0.853199  normal 
 
 
-
 
NC_013132  Cpin_4835  short-chain dehydrogenase/reductase SDR  27.89 
 
 
273 aa  73.2  0.000000000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  hitchhiker  0.000000227026 
 
 
-
 
NC_008577  Shewana3_3687  short-chain dehydrogenase/reductase SDR  25.91 
 
 
243 aa  73.2  0.000000000003  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_3945  short-chain dehydrogenase/reductase SDR  29.9 
 
 
264 aa  73.6  0.000000000003  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_006369  lpl0338  hypothetical protein  26.8 
 
 
257 aa  72.8  0.000000000004  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007951  Bxe_A4474  putative short-chain dehydrogenase/reductase SDR  30.89 
 
 
270 aa  72.8  0.000000000004  Burkholderia xenovorans LB400  Bacteria  normal  hitchhiker  0.000662369 
 
 
-
 
NC_008391  Bamb_3723  short-chain dehydrogenase/reductase SDR  28.05 
 
 
266 aa  72.8  0.000000000004  Burkholderia ambifaria AMMD  Bacteria  normal  0.662669  normal  0.858524 
 
 
-
 
NC_014248  Aazo_3368  short-chain dehydrogenase/reductase SDR  27.75 
 
 
241 aa  72.8  0.000000000004  'Nostoc azollae' 0708  Bacteria  normal  0.119808  n/a   
 
 
-
 
NC_009972  Haur_1420  short-chain dehydrogenase/reductase SDR  28.65 
 
 
280 aa  72.4  0.000000000005  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_2257  short-chain dehydrogenase/reductase SDR  28.33 
 
 
267 aa  72.8  0.000000000005  Meiothermus ruber DSM 1279  Bacteria  normal  0.229091  hitchhiker  0.0024535 
 
 
-
 
NC_003909  BCE_4205  short chain dehydrogenase/reductase family oxidoreductase  26.7 
 
 
264 aa  72.8  0.000000000005  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_006368  lpp0362  hypothetical protein  27.41 
 
 
257 aa  72.4  0.000000000005  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_011663  Sbal223_2174  short-chain dehydrogenase/reductase SDR  29.29 
 
 
261 aa  72  0.000000000006  Shewanella baltica OS223  Bacteria  normal  0.30567  hitchhiker  0.00567391 
 
 
-
 
NC_007974  Rmet_4523  short-chain dehydrogenase/reductase SDR  26.94 
 
 
266 aa  72  0.000000000006  Cupriavidus metallidurans CH34  Bacteria  normal  0.642907  decreased coverage  0.0040913 
 
 
-
 
NC_013739  Cwoe_5549  short-chain dehydrogenase/reductase SDR  30.48 
 
 
269 aa  72  0.000000000006  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_0599  short-chain dehydrogenase/reductase SDR  26.9 
 
 
239 aa  72.4  0.000000000006  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_3264  putative oxidoreductase protein  28.95 
 
 
264 aa  72  0.000000000007  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.724633  normal 
 
 
-
 
NC_008527  LACR_1571  Short-chain alcohol dehydrogenase of unknown specificity  29.1 
 
 
243 aa  71.6  0.000000000008  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A4244  oxidoreductase, short-chain dehydrogenase/reductase family  26.18 
 
 
264 aa  71.6  0.000000000009  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_2478  Short-chain dehydrogenase/reductase SDR  27.83 
 
 
262 aa  71.6  0.000000000009  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A1849  short chain dehydrogenase  25.67 
 
 
253 aa  71.6  0.000000000009  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.714478  normal  0.244786 
 
 
-
 
NC_009921  Franean1_5718  short-chain dehydrogenase/reductase SDR  30.85 
 
 
276 aa  71.6  0.000000000009  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B0992  oxidoreductase, short-chain dehydrogenase/reductase family  26.18 
 
 
264 aa  71.6  0.000000000009  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_1307  short-chain dehydrogenase/reductase SDR  31.05 
 
 
275 aa  71.6  0.000000000009  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.274606 
 
 
-
 
NC_010086  Bmul_4300  short-chain dehydrogenase/reductase SDR  28.3 
 
 
266 aa  71.2  0.00000000001  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.498015  normal 
 
 
-
 
NC_011080  SNSL254_A1844  short chain dehydrogenase  25.67 
 
 
253 aa  71.6  0.00000000001  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  hitchhiker  0.00000457135 
 
 
-
 
NC_011083  SeHA_C1907  short chain dehydrogenase  25.67 
 
 
253 aa  71.6  0.00000000001  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  hitchhiker  0.000000000000106494 
 
 
-
 
NC_006369  lpl1378  hypothetical protein  27.55 
 
 
259 aa  71.2  0.00000000001  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007355  Mbar_A2512  3-oxoacyl-(acyl-carrier protein) reductase  27.27 
 
 
236 aa  71.2  0.00000000001  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.0588198  normal  0.237046 
 
 
-
 
NC_009831  Ssed_4057  short-chain dehydrogenase/reductase SDR  27.14 
 
 
239 aa  71.2  0.00000000001  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_0604  short-chain dehydrogenase/reductase SDR  28.88 
 
 
268 aa  71.2  0.00000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.710903  normal  0.301955 
 
 
-
 
NC_013161  Cyan8802_4341  short-chain dehydrogenase/reductase SDR  23.94 
 
 
236 aa  71.2  0.00000000001  Cyanothece sp. PCC 8802  Bacteria  normal  0.157663  normal 
 
 
-
 
NC_010322  PputGB1_3070  short-chain dehydrogenase/reductase SDR  28.72 
 
 
265 aa  71.2  0.00000000001  Pseudomonas putida GB-1  Bacteria  normal  0.0355963  normal 
 
 
-
 
NC_011149  SeAg_B1429  short chain dehydrogenase  25.67 
 
 
253 aa  71.6  0.00000000001  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.281885  n/a   
 
 
-
 
NC_011205  SeD_A1611  short chain dehydrogenase  25.67 
 
 
253 aa  71.6  0.00000000001  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  hitchhiker  0.000000230658 
 
 
-
 
NC_011726  PCC8801_4281  short-chain dehydrogenase/reductase SDR  23.94 
 
 
236 aa  71.2  0.00000000001  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008576  Mmc1_0275  short-chain dehydrogenase/reductase SDR  28.8 
 
 
243 aa  71.2  0.00000000001  Magnetococcus sp. MC-1  Bacteria  decreased coverage  0.00000379715  normal 
 
 
-
 
NC_010511  M446_4281  short-chain dehydrogenase/reductase SDR  29.19 
 
 
333 aa  70.9  0.00000000001  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_3539  Short-chain dehydrogenase/reductase SDR  28.35 
 
 
262 aa  70.1  0.00000000002  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0684522 
 
 
-
 
NC_011773  BCAH820_4158  oxidoreductase, short-chain dehydrogenase/reductase family  26.18 
 
 
264 aa  70.5  0.00000000002  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_013162  Coch_1233  short-chain dehydrogenase/reductase SDR  29.84 
 
 
269 aa  70.5  0.00000000002  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
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