More than 300 homologs were found in PanDaTox collection
for query gene Sden_1876 on replicon NC_007954
Organism: Shewanella denitrificans OS217



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007954  Sden_1876  short-chain dehydrogenase/reductase SDR  100 
 
 
226 aa  462  1e-129  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_2183  putative short-chain dehydrogenase  58.67 
 
 
221 aa  281  7.000000000000001e-75  Shewanella sediminis HAW-EB3  Bacteria  normal  0.766621  normal 
 
 
-
 
NC_008345  Sfri_2454  short-chain dehydrogenase/reductase SDR  58.67 
 
 
225 aa  276  2e-73  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_3856  short-chain dehydrogenase/reductase SDR  59.73 
 
 
225 aa  270  1e-71  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3982  short-chain dehydrogenase/reductase SDR  59.73 
 
 
225 aa  269  2.9999999999999997e-71  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_3800  short-chain dehydrogenase/reductase SDR  59.73 
 
 
225 aa  268  4e-71  Shewanella baltica OS223  Bacteria  hitchhiker  0.0000125845  normal 
 
 
-
 
NC_009052  Sbal_0468  short-chain dehydrogenase/reductase SDR  59.29 
 
 
225 aa  259  3e-68  Shewanella baltica OS155  Bacteria  decreased coverage  0.00000583805  n/a   
 
 
-
 
NC_009783  VIBHAR_03631  hypothetical protein  58.22 
 
 
221 aa  256  1e-67  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_004347  SO_0510  short chain dehydrogenase/reductase family oxidoreductase  60.44 
 
 
225 aa  253  2.0000000000000002e-66  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_0509  short-chain dehydrogenase/reductase SDR  61.33 
 
 
225 aa  253  2.0000000000000002e-66  Shewanella sp. ANA-3  Bacteria  normal  0.832516  normal 
 
 
-
 
NC_009092  Shew_0706  short-chain dehydrogenase/reductase SDR  54.78 
 
 
225 aa  251  4.0000000000000004e-66  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_0532  short-chain dehydrogenase/reductase SDR  56 
 
 
220 aa  251  8.000000000000001e-66  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00000466004  n/a   
 
 
-
 
NC_008321  Shewmr4_0509  short-chain dehydrogenase/reductase SDR  61.33 
 
 
225 aa  243  1.9999999999999999e-63  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3522  short-chain dehydrogenase/reductase SDR  61.33 
 
 
225 aa  243  1.9999999999999999e-63  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_3349  short-chain dehydrogenase/reductase SDR  57.33 
 
 
225 aa  240  1e-62  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_002433  putative short-chain dehydrogenase  52.89 
 
 
221 aa  236  2e-61  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_0348  short-chain dehydrogenase/reductase SDR  30.04 
 
 
280 aa  97.8  1e-19  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_006369  lpl1378  hypothetical protein  31.28 
 
 
259 aa  84.3  0.000000000000001  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_009338  Mflv_0138  short-chain dehydrogenase/reductase SDR  31.84 
 
 
273 aa  84  0.000000000000002  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_012792  Vapar_6207  short-chain dehydrogenase/reductase SDR  34.21 
 
 
277 aa  83.2  0.000000000000003  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_006368  lpp1382  hypothetical protein  30.77 
 
 
259 aa  82  0.000000000000007  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_013510  Tcur_0268  short-chain dehydrogenase/reductase SDR  29.3 
 
 
251 aa  81.6  0.000000000000009  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_5451  short-chain dehydrogenase/reductase SDR  30.62 
 
 
281 aa  80.5  0.00000000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.255746 
 
 
-
 
NC_014248  Aazo_3368  short-chain dehydrogenase/reductase SDR  30.93 
 
 
241 aa  79.7  0.00000000000003  'Nostoc azollae' 0708  Bacteria  normal  0.119808  n/a   
 
 
-
 
NC_009485  BBta_6766  putative short-chain dehydrogenase  33.69 
 
 
279 aa  79.7  0.00000000000003  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.353478  normal 
 
 
-
 
NC_010552  BamMC406_5270  short-chain dehydrogenase/reductase SDR  30.09 
 
 
262 aa  79.3  0.00000000000005  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_0089  short-chain dehydrogenase/reductase SDR  33.33 
 
 
264 aa  78.6  0.00000000000008  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_1668  short-chain dehydrogenase/reductase SDR  31.96 
 
 
251 aa  77.8  0.0000000000001  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_5627  short-chain dehydrogenase/reductase SDR  31.89 
 
 
282 aa  77.8  0.0000000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.193827 
 
 
-
 
NC_007908  Rfer_0310  short-chain dehydrogenase/reductase SDR  34.21 
 
 
284 aa  77.8  0.0000000000001  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_2216  short-chain dehydrogenase/reductase SDR  34.39 
 
 
266 aa  78.2  0.0000000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3539  Short-chain dehydrogenase/reductase SDR  31.96 
 
 
262 aa  77  0.0000000000002  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0684522 
 
 
-
 
NC_008148  Rxyl_3000  short-chain dehydrogenase/reductase SDR  31.05 
 
 
241 aa  77.4  0.0000000000002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_0209  short-chain dehydrogenase/reductase SDR  28.95 
 
 
262 aa  77  0.0000000000002  Methylobacterium extorquens PA1  Bacteria  normal  0.128983  normal 
 
 
-
 
NC_008391  Bamb_4735  short-chain dehydrogenase/reductase SDR  30.09 
 
 
262 aa  76.6  0.0000000000003  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_3183  short-chain dehydrogenase/reductase SDR  29.63 
 
 
260 aa  76.3  0.0000000000004  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_009727  CBUD_0471  short chain dehydrogenase  28.27 
 
 
258 aa  75.9  0.0000000000004  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_1864  oxidoreductase, short chain dehydrogenase/reductase family  30.61 
 
 
262 aa  75.5  0.0000000000007  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_2686  short-chain dehydrogenase/reductase SDR  31.09 
 
 
258 aa  74.7  0.000000000001  Pelodictyon phaeoclathratiforme BU-1  Bacteria  hitchhiker  0.00673203  n/a   
 
 
-
 
NC_013131  Caci_3280  short-chain dehydrogenase/reductase SDR  26.7 
 
 
232 aa  74.7  0.000000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.798057  normal 
 
 
-
 
NC_011757  Mchl_0153  short-chain dehydrogenase/reductase SDR  28.42 
 
 
262 aa  74.3  0.000000000001  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.418257  normal  0.135019 
 
 
-
 
NC_009436  Ent638_2278  short-chain dehydrogenase/reductase SDR  31.37 
 
 
260 aa  74.7  0.000000000001  Enterobacter sp. 638  Bacteria  normal  normal  0.161761 
 
 
-
 
NC_008726  Mvan_6051  short chain dehydrogenase  26.75 
 
 
221 aa  74.7  0.000000000001  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0202908  normal  0.993323 
 
 
-
 
NC_013132  Cpin_4835  short-chain dehydrogenase/reductase SDR  28.11 
 
 
273 aa  73.6  0.000000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  hitchhiker  0.000000227026 
 
 
-
 
NC_009484  Acry_1087  short-chain dehydrogenase/reductase SDR  28.57 
 
 
286 aa  73.6  0.000000000002  Acidiphilium cryptum JF-5  Bacteria  normal  0.252629  n/a   
 
 
-
 
NC_008146  Mmcs_5387  short chain dehydrogenase  27.95 
 
 
222 aa  73.9  0.000000000002  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_5476  short chain dehydrogenase  27.95 
 
 
222 aa  73.9  0.000000000002  Mycobacterium sp. KMS  Bacteria  normal  0.0679291  normal  0.311943 
 
 
-
 
NC_009077  Mjls_5763  short chain dehydrogenase  27.95 
 
 
222 aa  73.9  0.000000000002  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
BN001308  ANIA_00618  conserved hypothetical protein  30.57 
 
 
268 aa  73.6  0.000000000003  Aspergillus nidulans FGSC A4  Eukaryota  normal  normal  0.767704 
 
 
-
 
NC_009523  RoseRS_3145  short-chain dehydrogenase/reductase SDR  31.8 
 
 
535 aa  73.6  0.000000000003  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.61705 
 
 
-
 
NC_009485  BBta_3264  putative oxidoreductase protein  29.74 
 
 
264 aa  73.2  0.000000000003  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.724633  normal 
 
 
-
 
NC_013730  Slin_6445  short-chain dehydrogenase/reductase SDR  27.6 
 
 
272 aa  72.8  0.000000000004  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_1098  short-chain dehydrogenase/reductase SDR  28.42 
 
 
249 aa  72.8  0.000000000004  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_0612  short-chain dehydrogenase/reductase SDR  28.65 
 
 
245 aa  72.4  0.000000000005  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_0718  short-chain dehydrogenase/reductase SDR  28.95 
 
 
263 aa  72.4  0.000000000005  Methylobacterium populi BJ001  Bacteria  normal  0.520585  normal 
 
 
-
 
NC_007492  Pfl01_2478  Short-chain dehydrogenase/reductase SDR  29.9 
 
 
262 aa  72  0.000000000007  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010117  COXBURSA331_A1696  short chain dehydrogenase/reductase family oxidoreductase  27.75 
 
 
258 aa  71.6  0.000000000009  Coxiella burnetii RSA 331  Bacteria  normal  0.817291  n/a   
 
 
-
 
NC_013093  Amir_0035  short-chain dehydrogenase/reductase SDR  28.34 
 
 
255 aa  71.2  0.00000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_4313  short chain dehydrogenase  29.63 
 
 
290 aa  71.2  0.00000000001  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_2186  3-ketoacyl-(acyl-carrier-protein) reductase  26.39 
 
 
241 aa  71.2  0.00000000001  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0885  oxidoreductase, short-chain dehydrogenase/reductase family  29.63 
 
 
256 aa  71.2  0.00000000001  Bacillus cereus B4264  Bacteria  normal  0.0698186  n/a   
 
 
-
 
NC_012912  Dd1591_2059  short-chain dehydrogenase/reductase SDR  29.56 
 
 
260 aa  71.6  0.00000000001  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_2206  short-chain dehydrogenase/reductase SDR  28.19 
 
 
261 aa  71.2  0.00000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.0587036  normal  0.882414 
 
 
-
 
NC_008025  Dgeo_0974  short chain dehydrogenase  29.07 
 
 
230 aa  71.6  0.00000000001  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.0177058  normal  0.671199 
 
 
-
 
NC_009338  Mflv_0854  short chain dehydrogenase  27.31 
 
 
225 aa  71.2  0.00000000001  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0159157 
 
 
-
 
NC_011059  Paes_0281  short-chain dehydrogenase/reductase SDR  28.72 
 
 
255 aa  71.2  0.00000000001  Prosthecochloris aestuarii DSM 271  Bacteria  hitchhiker  0.000634692  hitchhiker  0.00117931 
 
 
-
 
NC_010816  BLD_0416  short-chain alcohol dehydrogenase  26.61 
 
 
235 aa  71.6  0.00000000001  Bifidobacterium longum DJO10A  Bacteria  normal  0.279959  n/a   
 
 
-
 
NC_013510  Tcur_3579  short-chain dehydrogenase/reductase SDR  31.44 
 
 
258 aa  70.9  0.00000000001  Thermomonospora curvata DSM 43183  Bacteria  normal  0.392131  n/a   
 
 
-
 
NC_007347  Reut_A1901  Short-chain dehydrogenase/reductase SDR  27.65 
 
 
266 aa  70.9  0.00000000002  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A3871  Short-chain dehydrogenase/reductase SDR  30.23 
 
 
263 aa  70.5  0.00000000002  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_1275  short-chain dehydrogenase/reductase SDR  30.89 
 
 
271 aa  70.1  0.00000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_0922  short chain dehydrogenase/reductase family oxidoreductase  29.1 
 
 
256 aa  69.7  0.00000000003  Bacillus cereus ATCC 10987  Bacteria  normal  0.191979  n/a   
 
 
-
 
NC_009077  Mjls_0177  short-chain dehydrogenase/reductase SDR  29.58 
 
 
262 aa  69.7  0.00000000003  Mycobacterium sp. JLS  Bacteria  normal  normal  0.721122 
 
 
-
 
NC_007413  Ava_2888  Short-chain dehydrogenase/reductase SDR  31.91 
 
 
257 aa  69.7  0.00000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0119499 
 
 
-
 
NC_008061  Bcen_4061  short-chain dehydrogenase/reductase SDR  29.02 
 
 
281 aa  69.7  0.00000000003  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.786818  n/a   
 
 
-
 
NC_008146  Mmcs_0188  short-chain dehydrogenase/reductase SDR  29.58 
 
 
262 aa  70.1  0.00000000003  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_014148  Plim_1352  short-chain dehydrogenase/reductase SDR  29.02 
 
 
271 aa  70.1  0.00000000003  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.708878  n/a   
 
 
-
 
NC_008543  Bcen2424_4305  short-chain dehydrogenase/reductase SDR  29.02 
 
 
281 aa  69.7  0.00000000003  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.699263 
 
 
-
 
NC_008705  Mkms_0197  short-chain dehydrogenase/reductase SDR  29.58 
 
 
262 aa  70.1  0.00000000003  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_1294  short-chain dehydrogenase/reductase SDR  30.05 
 
 
266 aa  69.3  0.00000000004  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_0742  short-chain dehydrogenase/reductase SDR  29.63 
 
 
256 aa  69.7  0.00000000004  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_008701  Pisl_1529  short-chain dehydrogenase/reductase SDR  33.33 
 
 
265 aa  69.3  0.00000000004  Pyrobaculum islandicum DSM 4184  Archaea  normal  0.0206025  normal  0.910086 
 
 
-
 
NC_013202  Hmuk_1178  short-chain dehydrogenase/reductase SDR  28.57 
 
 
259 aa  69.3  0.00000000005  Halomicrobium mukohataei DSM 12286  Archaea  normal  0.82399  normal 
 
 
-
 
NC_008740  Maqu_0117  short chain dehydrogenase  28.5 
 
 
250 aa  68.9  0.00000000005  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_0194  short-chain dehydrogenase/reductase SDR  27.78 
 
 
233 aa  68.9  0.00000000006  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_2231  short-chain dehydrogenase/reductase SDR  31.96 
 
 
263 aa  68.6  0.00000000007  Haliangium ochraceum DSM 14365  Bacteria  normal  0.19807  normal 
 
 
-
 
NC_011772  BCG9842_B4450  oxidoreductase  29.63 
 
 
256 aa  68.6  0.00000000008  Bacillus cereus G9842  Bacteria  normal  0.0191717  normal  0.678808 
 
 
-
 
NC_008463  PA14_08440  putative short chain alcohol dehydrogenase  29.53 
 
 
266 aa  68.6  0.00000000008  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.0000000229698 
 
 
-
 
NC_014165  Tbis_0964  short-chain dehydrogenase/reductase SDR  25.66 
 
 
227 aa  68.2  0.00000000009  Thermobispora bispora DSM 43833  Bacteria  normal  0.0180181  normal  0.277757 
 
 
-
 
NC_009523  RoseRS_0388  short-chain dehydrogenase/reductase SDR  27.37 
 
 
269 aa  68.2  0.00000000009  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.14599 
 
 
-
 
NC_010512  Bcenmc03_6914  short-chain dehydrogenase/reductase SDR  28.51 
 
 
279 aa  68.2  0.0000000001  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.851419  normal 
 
 
-
 
NC_014230  CA2559_04715  Short-chain dehydrogenase/reductase SDR  28.15 
 
 
249 aa  68.2  0.0000000001  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.863639  n/a   
 
 
-
 
NC_007794  Saro_0252  short-chain dehydrogenase/reductase SDR  27.23 
 
 
281 aa  67.8  0.0000000001  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_2639  short-chain dehydrogenase/reductase SDR  25.22 
 
 
238 aa  68.2  0.0000000001  Rhodothermus marinus DSM 4252  Bacteria  normal  0.37123  n/a   
 
 
-
 
NC_010515  Bcenmc03_3212  short-chain dehydrogenase/reductase SDR  28.12 
 
 
266 aa  68.2  0.0000000001  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.177624  normal 
 
 
-
 
NC_014158  Tpau_3139  short-chain dehydrogenase/reductase SDR  25.96 
 
 
251 aa  67.8  0.0000000001  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.295469  n/a   
 
 
-
 
NC_010803  Clim_2370  short-chain dehydrogenase/reductase SDR  26.8 
 
 
253 aa  68.2  0.0000000001  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_4964  short chain dehydrogenase  27.76 
 
 
281 aa  67  0.0000000002  Mycobacterium sp. JLS  Bacteria  normal  normal  0.337953 
 
 
-
 
NC_008146  Mmcs_4581  short chain dehydrogenase  27.76 
 
 
281 aa  67  0.0000000002  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4669  short chain dehydrogenase  27.76 
 
 
281 aa  67  0.0000000002  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
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