More than 300 homologs were found in PanDaTox collection
for query gene Ssed_2183 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009831  Ssed_2183  putative short-chain dehydrogenase  100 
 
 
221 aa  451  1.0000000000000001e-126  Shewanella sediminis HAW-EB3  Bacteria  normal  0.766621  normal 
 
 
-
 
NC_011663  Sbal223_3800  short-chain dehydrogenase/reductase SDR  69.2 
 
 
225 aa  316  2e-85  Shewanella baltica OS223  Bacteria  hitchhiker  0.0000125845  normal 
 
 
-
 
NC_009665  Shew185_3856  short-chain dehydrogenase/reductase SDR  68.3 
 
 
225 aa  315  4e-85  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3982  short-chain dehydrogenase/reductase SDR  68.3 
 
 
225 aa  314  6e-85  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_2454  short-chain dehydrogenase/reductase SDR  64.89 
 
 
225 aa  303  1.0000000000000001e-81  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_0532  short-chain dehydrogenase/reductase SDR  68.78 
 
 
220 aa  302  3.0000000000000004e-81  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00000466004  n/a   
 
 
-
 
NC_009052  Sbal_0468  short-chain dehydrogenase/reductase SDR  68.3 
 
 
225 aa  301  7.000000000000001e-81  Shewanella baltica OS155  Bacteria  decreased coverage  0.00000583805  n/a   
 
 
-
 
NC_009438  Sputcn32_3349  short-chain dehydrogenase/reductase SDR  67.11 
 
 
225 aa  291  4e-78  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_0509  short-chain dehydrogenase/reductase SDR  67.56 
 
 
225 aa  283  2.0000000000000002e-75  Shewanella sp. ANA-3  Bacteria  normal  0.832516  normal 
 
 
-
 
NC_004347  SO_0510  short chain dehydrogenase/reductase family oxidoreductase  67.11 
 
 
225 aa  282  3.0000000000000004e-75  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009783  VIBHAR_03631  hypothetical protein  61.82 
 
 
221 aa  275  4e-73  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009092  Shew_0706  short-chain dehydrogenase/reductase SDR  60.62 
 
 
225 aa  275  5e-73  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0509  short-chain dehydrogenase/reductase SDR  67.56 
 
 
225 aa  274  9e-73  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3522  short-chain dehydrogenase/reductase SDR  67.56 
 
 
225 aa  274  9e-73  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_1876  short-chain dehydrogenase/reductase SDR  58.67 
 
 
226 aa  264  8e-70  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_002433  putative short-chain dehydrogenase  60.91 
 
 
221 aa  257  8e-68  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_3000  short-chain dehydrogenase/reductase SDR  31.78 
 
 
241 aa  92.8  4e-18  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A1901  Short-chain dehydrogenase/reductase SDR  32.73 
 
 
266 aa  92  6e-18  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_1668  short-chain dehydrogenase/reductase SDR  32.46 
 
 
251 aa  92  6e-18  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_2639  short-chain dehydrogenase/reductase SDR  28.64 
 
 
238 aa  89.4  4e-17  Rhodothermus marinus DSM 4252  Bacteria  normal  0.37123  n/a   
 
 
-
 
NC_013131  Caci_3280  short-chain dehydrogenase/reductase SDR  28.05 
 
 
232 aa  89  5e-17  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.798057  normal 
 
 
-
 
NC_010831  Cphamn1_0247  short-chain dehydrogenase/reductase SDR  29.56 
 
 
223 aa  89  6e-17  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_0348  short-chain dehydrogenase/reductase SDR  26.11 
 
 
280 aa  85.9  4e-16  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_0138  short-chain dehydrogenase/reductase SDR  32.66 
 
 
273 aa  84.3  0.000000000000001  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A4474  putative short-chain dehydrogenase/reductase SDR  30.22 
 
 
270 aa  82  0.000000000000006  Burkholderia xenovorans LB400  Bacteria  normal  hitchhiker  0.000662369 
 
 
-
 
NC_010627  Bphy_7637  short-chain dehydrogenase/reductase SDR  25.94 
 
 
251 aa  82  0.000000000000006  Burkholderia phymatum STM815  Bacteria  normal  normal  0.897824 
 
 
-
 
NC_011726  PCC8801_4281  short-chain dehydrogenase/reductase SDR  25 
 
 
236 aa  81.6  0.000000000000008  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008639  Cpha266_0152  short-chain dehydrogenase/reductase SDR  29.19 
 
 
223 aa  81.6  0.000000000000008  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_4341  short-chain dehydrogenase/reductase SDR  25 
 
 
236 aa  81.6  0.000000000000008  Cyanothece sp. PCC 8802  Bacteria  normal  0.157663  normal 
 
 
-
 
NC_007492  Pfl01_4040  Short-chain dehydrogenase/reductase SDR  31.7 
 
 
264 aa  81.3  0.00000000000001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.128419  normal  0.923094 
 
 
-
 
NC_007952  Bxe_B0206  short chain dehydrogenase  28.36 
 
 
284 aa  81.3  0.00000000000001  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010803  Clim_2370  short-chain dehydrogenase/reductase SDR  26.34 
 
 
253 aa  81.3  0.00000000000001  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_0718  short-chain dehydrogenase/reductase SDR  28.76 
 
 
263 aa  80.5  0.00000000000002  Methylobacterium populi BJ001  Bacteria  normal  0.520585  normal 
 
 
-
 
NC_013440  Hoch_4638  short-chain dehydrogenase/reductase SDR  29.11 
 
 
238 aa  80.5  0.00000000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  0.0865823  normal 
 
 
-
 
NC_008009  Acid345_2206  short-chain dehydrogenase/reductase SDR  28.76 
 
 
261 aa  80.5  0.00000000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.0587036  normal  0.882414 
 
 
-
 
NC_008061  Bcen_4061  short-chain dehydrogenase/reductase SDR  31.8 
 
 
281 aa  80.1  0.00000000000002  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.786818  n/a   
 
 
-
 
NC_010681  Bphyt_3970  short-chain dehydrogenase/reductase SDR  30 
 
 
270 aa  80.5  0.00000000000002  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_4305  short-chain dehydrogenase/reductase SDR  31.8 
 
 
281 aa  80.1  0.00000000000002  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.699263 
 
 
-
 
NC_012850  Rleg_3582  short-chain dehydrogenase/reductase SDR  29.78 
 
 
265 aa  79.7  0.00000000000003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.15353 
 
 
-
 
NC_002976  SERP2049  short chain dehydrogenase/reductase family oxidoreductase  27.15 
 
 
230 aa  80.1  0.00000000000003  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_1686  short-chain dehydrogenase/reductase SDR  30 
 
 
269 aa  80.1  0.00000000000003  Spirosoma linguale DSM 74  Bacteria  normal  0.292744  normal 
 
 
-
 
NC_008254  Meso_3769  short-chain dehydrogenase/reductase SDR  26.4 
 
 
247 aa  79.7  0.00000000000004  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_3264  putative oxidoreductase protein  29.73 
 
 
264 aa  79.3  0.00000000000004  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.724633  normal 
 
 
-
 
NC_008391  Bamb_3723  short-chain dehydrogenase/reductase SDR  30.88 
 
 
266 aa  79.3  0.00000000000004  Burkholderia ambifaria AMMD  Bacteria  normal  0.662669  normal  0.858524 
 
 
-
 
NC_010184  BcerKBAB4_3967  short-chain dehydrogenase/reductase SDR  29.28 
 
 
264 aa  79.3  0.00000000000004  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0321162  n/a   
 
 
-
 
NC_010676  Bphyt_7087  short chain dehydrogenase  27.86 
 
 
284 aa  79.3  0.00000000000004  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_0388  short-chain dehydrogenase/reductase SDR  27.98 
 
 
269 aa  79  0.00000000000005  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.14599 
 
 
-
 
NC_010681  Bphyt_1098  short-chain dehydrogenase/reductase SDR  28.78 
 
 
249 aa  79  0.00000000000005  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_005945  BAS4042  short chain dehydrogenase/reductase family oxidoreductase  27.73 
 
 
264 aa  79  0.00000000000006  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_4357  short chain dehydrogenase/reductase family oxidoreductase  27.73 
 
 
264 aa  79  0.00000000000006  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A4268  oxidoreductase, short-chain dehydrogenase/reductase family  27.73 
 
 
264 aa  79  0.00000000000006  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_4835  short-chain dehydrogenase/reductase SDR  27.78 
 
 
273 aa  78.6  0.00000000000007  Chitinophaga pinensis DSM 2588  Bacteria  normal  hitchhiker  0.000000227026 
 
 
-
 
NC_004347  SO_4141  short chain dehydrogenase/reductase family oxidoreductase  30.43 
 
 
243 aa  78.2  0.00000000000008  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007516  Syncc9605_0731  short chain dehydrogenase  27.23 
 
 
235 aa  78.2  0.00000000000008  Synechococcus sp. CC9605  Bacteria  normal  0.510402  normal 
 
 
-
 
NC_011773  BCAH820_4158  oxidoreductase, short-chain dehydrogenase/reductase family  28.11 
 
 
264 aa  78.2  0.00000000000008  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_007974  Rmet_4523  short-chain dehydrogenase/reductase SDR  30 
 
 
266 aa  78.6  0.00000000000008  Cupriavidus metallidurans CH34  Bacteria  normal  0.642907  decreased coverage  0.0040913 
 
 
-
 
NC_010338  Caul_3237  short chain dehydrogenase  30.73 
 
 
274 aa  78.2  0.00000000000008  Caulobacter sp. K31  Bacteria  normal  normal  0.996911 
 
 
-
 
NC_007355  Mbar_A2512  3-oxoacyl-(acyl-carrier protein) reductase  28.34 
 
 
236 aa  78.2  0.00000000000009  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.0588198  normal  0.237046 
 
 
-
 
NC_010552  BamMC406_4199  short-chain dehydrogenase/reductase SDR  31.8 
 
 
266 aa  78.2  0.00000000000009  Burkholderia ambifaria MC40-6  Bacteria  normal  0.308915  normal  0.0922746 
 
 
-
 
NC_003909  BCE_4205  short chain dehydrogenase/reductase family oxidoreductase  28.18 
 
 
264 aa  77.8  0.0000000000001  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK3889  short chain dehydrogenase/reductase family oxidoreductase  28.18 
 
 
264 aa  78.2  0.0000000000001  Bacillus cereus E33L  Bacteria  normal  0.674087  n/a   
 
 
-
 
NC_010172  Mext_0209  short-chain dehydrogenase/reductase SDR  28.32 
 
 
262 aa  78.2  0.0000000000001  Methylobacterium extorquens PA1  Bacteria  normal  0.128983  normal 
 
 
-
 
NC_011368  Rleg2_5185  short-chain dehydrogenase/reductase SDR  30.45 
 
 
285 aa  78.2  0.0000000000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_3145  short-chain dehydrogenase/reductase SDR  32.8 
 
 
535 aa  78.2  0.0000000000001  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.61705 
 
 
-
 
NC_013517  Sterm_0395  short-chain dehydrogenase/reductase SDR  30 
 
 
275 aa  77.8  0.0000000000001  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_0153  short-chain dehydrogenase/reductase SDR  27.88 
 
 
262 aa  77.8  0.0000000000001  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.418257  normal  0.135019 
 
 
-
 
NC_010511  M446_4281  short-chain dehydrogenase/reductase SDR  28.42 
 
 
333 aa  78.2  0.0000000000001  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_1309  short-chain dehydrogenase/reductase SDR  31.16 
 
 
267 aa  77  0.0000000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_3212  short-chain dehydrogenase/reductase SDR  30.41 
 
 
266 aa  77.4  0.0000000000002  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.177624  normal 
 
 
-
 
NC_007511  Bcep18194_B1706  Short-chain dehydrogenase/reductase SDR  30.45 
 
 
266 aa  77  0.0000000000002  Burkholderia sp. 383  Bacteria  normal  0.951732  normal 
 
 
-
 
NC_009456  VC0395_0184  short chain dehydrogenase/reductase family oxidoreductase  29.25 
 
 
239 aa  77  0.0000000000002  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_3366  short-chain dehydrogenase/reductase SDR  27.94 
 
 
250 aa  77  0.0000000000002  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_012792  Vapar_6207  short-chain dehydrogenase/reductase SDR  32.26 
 
 
277 aa  77  0.0000000000002  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_63890  putative short-chain dehydrogenase  31.02 
 
 
265 aa  77.4  0.0000000000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_6051  short chain dehydrogenase  26.82 
 
 
221 aa  77.4  0.0000000000002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0202908  normal  0.993323 
 
 
-
 
NC_009832  Spro_3183  short-chain dehydrogenase/reductase SDR  30.14 
 
 
260 aa  76.6  0.0000000000002  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_6766  putative short-chain dehydrogenase  31.87 
 
 
279 aa  76.6  0.0000000000003  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.353478  normal 
 
 
-
 
NC_010322  PputGB1_3070  short-chain dehydrogenase/reductase SDR  30.73 
 
 
265 aa  76.3  0.0000000000003  Pseudomonas putida GB-1  Bacteria  normal  0.0355963  normal 
 
 
-
 
NC_008686  Pden_2157  short-chain dehydrogenase/reductase SDR  24.89 
 
 
243 aa  76.6  0.0000000000003  Paracoccus denitrificans PD1222  Bacteria  normal  0.300132  normal 
 
 
-
 
NC_010505  Mrad2831_4718  short-chain dehydrogenase/reductase SDR  29.32 
 
 
270 aa  76.6  0.0000000000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_0445  short-chain dehydrogenase/reductase SDR  28.77 
 
 
267 aa  76.3  0.0000000000003  Cyanothece sp. PCC 7425  Bacteria  normal  0.810235  normal  0.221701 
 
 
-
 
NC_005957  BT9727_3881  oxidoreductase, short-chain dehydrogenase/reductase  27.91 
 
 
264 aa  76.3  0.0000000000004  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_18610  short chain dehydrogenase  30.23 
 
 
263 aa  75.9  0.0000000000004  Azotobacter vinelandii DJ  Bacteria  normal  0.56588  n/a   
 
 
-
 
NC_009621  Smed_5531  short-chain dehydrogenase/reductase SDR  31.25 
 
 
269 aa  75.9  0.0000000000005  Sinorhizobium medicae WSM419  Bacteria  normal  0.356237  normal  0.14087 
 
 
-
 
NC_009972  Haur_1067  short-chain dehydrogenase/reductase SDR  28.88 
 
 
258 aa  75.9  0.0000000000005  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_008528  OEOE_1560  Short-chain dehydrogenase of various substrate specificities  29.89 
 
 
272 aa  75.9  0.0000000000005  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_7667  short-chain dehydrogenase/reductase SDR  29.03 
 
 
332 aa  75.5  0.0000000000006  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.755346  n/a   
 
 
-
 
NC_004578  PSPTO_1864  oxidoreductase, short chain dehydrogenase/reductase family  31.19 
 
 
262 aa  75.5  0.0000000000006  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_3485  short chain dehydrogenase  29.03 
 
 
273 aa  75.5  0.0000000000006  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.591182 
 
 
-
 
NC_008577  Shewana3_3687  short-chain dehydrogenase/reductase SDR  28.57 
 
 
243 aa  75.5  0.0000000000006  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009487  SaurJH9_2505  short-chain dehydrogenase/reductase SDR  26.22 
 
 
231 aa  75.5  0.0000000000007  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_2555  short-chain dehydrogenase/reductase SDR  26.22 
 
 
231 aa  75.5  0.0000000000007  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.459049  n/a   
 
 
-
 
NC_008025  Dgeo_2238  short-chain dehydrogenase/reductase SDR  31.22 
 
 
317 aa  75.5  0.0000000000007  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_3961  short-chain dehydrogenase/reductase SDR  26.75 
 
 
236 aa  75.1  0.0000000000007  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_2831  short-chain dehydrogenase/reductase SDR  27.19 
 
 
264 aa  75.1  0.0000000000008  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_2278  short-chain dehydrogenase/reductase SDR  30.28 
 
 
260 aa  75.1  0.0000000000008  Enterobacter sp. 638  Bacteria  normal  normal  0.161761 
 
 
-
 
NC_013521  Sked_24130  short-chain alcohol dehydrogenase  31.67 
 
 
266 aa  74.7  0.0000000000009  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.969986 
 
 
-
 
NC_007005  Psyr_3539  Short-chain dehydrogenase/reductase SDR  29.82 
 
 
262 aa  74.7  0.0000000000009  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0684522 
 
 
-
 
NC_007511  Bcep18194_B0958  Short-chain dehydrogenase/reductase SDR  28.44 
 
 
263 aa  74.7  0.000000000001  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_5500  short-chain dehydrogenase/reductase SDR  28 
 
 
250 aa  74.3  0.000000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
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