Gene Swoo_1668 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_1668 
Symbol 
ID6115909 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp2064464 
End bp2065219 
Gene Length756 bp 
Protein Length251 aa 
Translation table11 
GC content41% 
IMG OID641633151 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001760049 
Protein GI170726023 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAATG AGTTAGCTGG AAAAACCATT TTGGTCACAG GCGCATCTTC TGGATTAGGA 
AAGGCTATTG CTATTTATTT TAGTACAGTC GGAGCTAGGG TTGTATTAAC CGGTCGAAAT
GAAGAGCGTT TACACGAAAC GCTAAAGGAC ATGAGTGGTT CTAACCACCT TTATTTTATA
GCTGATCTGG CAAAAGTAGA GTCAACTCAA GCAATGATGG ATACTGTTTT TGCTAATGTT
GGGGCTCTTG ATAGTGTTAT TCATTGTGCT GGAATTCAAA AGACCCTGCC ACTACAAGCT
TTGAAAGAAC ATCACTTCGA TGATATTTTT AATACAAATG TGAAAAGTGC CCAGTTTATC
GCTAAGTTTT TGCGTAAAAA AGGCAGGTAC AACTCACAAG GTACAAGCTT AGTTTTACTC
AGTTCAGTTG CTGCGGTGTG CGGCGAGCCT GCAATTTCTA GTTATTCAGC CTCCAAGGCT
GCATTATTGG GGTTATCCAA GTCTTTAGCT ATAGAGCTAG CACGTCAAAA TATTCGAGTT
AATTGTATAG CACCCGGTCA TGTTGGGACT GAAATGGCGA TAGAGTTTAG TAAACAGCTT
ACAGCTGAGC AACGTGAAAA CATTCTGCTT AAGCATCCAC TTGGCCTTGG TAAACCTGAA
TATATCGCTC AAGCTGCAGA GTTTTTAGCA AGTGATAAGT CATGTTGGAT CACCGGGACA
ACTATTTTTG TTGATGGTGG ATATAGTGCT CACTAA
 
Protein sequence
MSNELAGKTI LVTGASSGLG KAIAIYFSTV GARVVLTGRN EERLHETLKD MSGSNHLYFI 
ADLAKVESTQ AMMDTVFANV GALDSVIHCA GIQKTLPLQA LKEHHFDDIF NTNVKSAQFI
AKFLRKKGRY NSQGTSLVLL SSVAAVCGEP AISSYSASKA ALLGLSKSLA IELARQNIRV
NCIAPGHVGT EMAIEFSKQL TAEQRENILL KHPLGLGKPE YIAQAAEFLA SDKSCWITGT
TIFVDGGYSA H