Gene Bphyt_1098 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_1098 
Symbol 
ID6281738 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp1238177 
End bp1238926 
Gene Length750 bp 
Protein Length249 aa 
Translation table11 
GC content59% 
IMG OID642620658 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001894739 
Protein GI187923097 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones49 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTAAGC TTGCAGGTAA GGTTGCATTG GTCACTGGCG CGAATAGCGG TATCGGTCTC 
GCTATCGCGA AGCGCTTCGC CGGCGAAGGC GCGCGTGTTT TCATGACCGG ACGGCGCCAG
GAAGAGCTGG ACAAGGCTGT TGCCGAGGTC GGTGGCAACG CTCGTGGCAT TCGGGGCGAC
GTATCTAACC TCGCCGACCT CGACCGTCTT TACGCGACTA TCAAAGACGA AGCGGGCGTC
ATCGATATTC TGATCGCAAA TGCCGGCGCT GGCGAGTTTG CCGCGCTTGG CGATATCACC
GAAGAACATT TCGACAAGAC ATTCGCGACC AACGTGAAGG GGACGCTTTT TACGGTGCAA
AAAGCGTTGC CGCTGCTCAA GGATGGCGCA TCCATTGTTC TCACGGGCTC CACGGCAGCC
GTAACCGGCA TTCCGGCATT TAGCGTGTAC AGCGCAAGCA AGGCGGCCAT CCGCAACTTC
GCGCGAAGCT GGATCCTCGA CCTTGCGCCG CGCAAGATTC GTGTAAACGT ACTCGCGCCC
GGCTCGACCT CGACGCCCGG ATGGCACAAC CTGGCTCCGT CGAATGACGT GCACGAAGGG
ATGGTGAGTG CAGTACAGGC GACGACGCCG CTTGGGCGTC TAGGTGATCC TGACGAGACG
GCCAGCGCTG CGCTATTTCT CGCATCCGAT GAAAGCAGTT TCGTCAACGG AAGCGAACTG
TTTGTAGACG GCGGTTCGGC GCAGATTTGA
 
Protein sequence
MGKLAGKVAL VTGANSGIGL AIAKRFAGEG ARVFMTGRRQ EELDKAVAEV GGNARGIRGD 
VSNLADLDRL YATIKDEAGV IDILIANAGA GEFAALGDIT EEHFDKTFAT NVKGTLFTVQ
KALPLLKDGA SIVLTGSTAA VTGIPAFSVY SASKAAIRNF ARSWILDLAP RKIRVNVLAP
GSTSTPGWHN LAPSNDVHEG MVSAVQATTP LGRLGDPDET ASAALFLASD ESSFVNGSEL
FVDGGSAQI