More than 300 homologs were found in PanDaTox collection
for query gene PputW619_2588 on replicon NC_010501
Organism: Pseudomonas putida W619



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010501  PputW619_2588  binding-protein-dependent transport systems inner membrane component  100 
 
 
267 aa  512  1e-144  Pseudomonas putida W619  Bacteria  normal  normal  0.417353 
 
 
-
 
NC_002947  PP_3210  ABC transporter, permease protein  95.51 
 
 
267 aa  457  9.999999999999999e-129  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_4760  binding-protein-dependent transport systems inner membrane component  66.16 
 
 
267 aa  333  2e-90  Variovorax paradoxus S110  Bacteria  normal  0.318809  n/a   
 
 
-
 
NC_007951  Bxe_A2015  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  70.63 
 
 
252 aa  333  2e-90  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_1263  ABC transporter permease  65.25 
 
 
262 aa  330  1e-89  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.165267 
 
 
-
 
NC_011757  Mchl_2038  binding-protein-dependent transport systems inner membrane component  62.16 
 
 
264 aa  315  5e-85  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.697058  normal  0.743835 
 
 
-
 
NC_010172  Mext_1719  binding-protein-dependent transport systems inner membrane component  62.93 
 
 
264 aa  315  5e-85  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_1095  binding-protein-dependent transport systems inner membrane component  62.84 
 
 
264 aa  305  4.0000000000000004e-82  Methylobacterium populi BJ001  Bacteria  normal  0.0240883  normal  0.166534 
 
 
-
 
NC_007953  Bxe_C0801  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  53.01 
 
 
298 aa  261  1e-68  Burkholderia xenovorans LB400  Bacteria  normal  0.0745387  normal 
 
 
-
 
NC_009668  Oant_3871  binding-protein-dependent transport systems inner membrane component  52.14 
 
 
280 aa  256  3e-67  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.208081  n/a   
 
 
-
 
NC_007802  Jann_1473  binding-protein-dependent transport systems inner membrane component  49.81 
 
 
283 aa  244  9.999999999999999e-64  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_1625  binding-protein-dependent transport systems inner membrane component  50.19 
 
 
285 aa  243  1.9999999999999999e-63  Trichodesmium erythraeum IMS101  Bacteria  normal  0.0792607  normal  0.95709 
 
 
-
 
NC_012848  Rleg_4665  binding-protein-dependent transport systems inner membrane component  51.32 
 
 
284 aa  234  9e-61  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.65192 
 
 
-
 
NC_009719  Plav_0891  binding-protein-dependent transport systems inner membrane component  51.19 
 
 
268 aa  230  2e-59  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.223421 
 
 
-
 
NC_011369  Rleg2_1676  binding-protein-dependent transport systems inner membrane component  52.78 
 
 
287 aa  228  7e-59  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  decreased coverage  0.00381914  normal 
 
 
-
 
NC_011989  Avi_3552  ABC transporter membrane spanning protein  50.19 
 
 
285 aa  226  2e-58  Agrobacterium vitis S4  Bacteria  normal  0.0625026  n/a   
 
 
-
 
NC_012791  Vapar_5134  binding-protein-dependent transport systems inner membrane component  50.19 
 
 
294 aa  214  9.999999999999999e-55  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_0469  binding-protein-dependent transport systems inner membrane component  50.75 
 
 
274 aa  213  2.9999999999999995e-54  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.858995  n/a   
 
 
-
 
NC_008825  Mpe_A3414  ATP-binding protein of ABC transporter  52.08 
 
 
280 aa  204  1e-51  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.24016 
 
 
-
 
NC_009952  Dshi_1382  binding-protein-dependent transport systems inner membrane component  49.39 
 
 
285 aa  204  2e-51  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.13305  normal 
 
 
-
 
NC_009484  Acry_0832  binding-protein-dependent transport systems inner membrane component  50.21 
 
 
254 aa  201  9e-51  Acidiphilium cryptum JF-5  Bacteria  normal  0.404323  n/a   
 
 
-
 
NC_007778  RPB_0572  binding-protein-dependent transport systems inner membrane component  53.59 
 
 
274 aa  201  9.999999999999999e-51  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0627389  normal  0.343483 
 
 
-
 
NC_007925  RPC_0572  binding-protein-dependent transport systems inner membrane component  51.97 
 
 
276 aa  199  5e-50  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0258  binding-protein-dependent transport systems inner membrane component  50.19 
 
 
274 aa  199  6e-50  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.750925 
 
 
-
 
NC_008786  Veis_3145  binding-protein-dependent transport systems inner membrane component  53.04 
 
 
298 aa  197  1.0000000000000001e-49  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.433007  normal  0.243208 
 
 
-
 
NC_007964  Nham_0427  binding-protein-dependent transport systems inner membrane component  48.41 
 
 
279 aa  194  1e-48  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_0333  binding-protein dependent transport system inner membrane protein  47.83 
 
 
278 aa  193  2e-48  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_7480  ABC transporter permease  50.42 
 
 
271 aa  191  1e-47  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.477102  normal  0.131238 
 
 
-
 
NC_010581  Bind_1091  binding-protein-dependent transport systems inner membrane component  50.63 
 
 
262 aa  179  5.999999999999999e-44  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_1164  binding-protein-dependent transport systems inner membrane component  51.12 
 
 
260 aa  172  3.9999999999999995e-42  Methylocella silvestris BL2  Bacteria  n/a    normal  0.233018 
 
 
-
 
NC_014148  Plim_2867  binding-protein-dependent transport systems inner membrane component  36.65 
 
 
277 aa  171  7.999999999999999e-42  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_009669  Oant_4580  binding-protein-dependent transport systems inner membrane component  39.68 
 
 
257 aa  162  6e-39  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_1862  binding-protein-dependent transport systems inner membrane component  37.02 
 
 
257 aa  159  6e-38  Variovorax paradoxus S110  Bacteria  normal  0.116723  n/a   
 
 
-
 
NC_008786  Veis_0620  binding-protein-dependent transport systems inner membrane component  38.6 
 
 
254 aa  157  1e-37  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.63161  normal 
 
 
-
 
NC_009921  Franean1_2281  binding-protein-dependent transport systems inner membrane component  36.07 
 
 
281 aa  153  2e-36  Frankia sp. EAN1pec  Bacteria  normal  0.695693  normal  0.331928 
 
 
-
 
NC_011894  Mnod_3419  binding-protein-dependent transport systems inner membrane component  38.04 
 
 
258 aa  147  2.0000000000000003e-34  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.121812  n/a   
 
 
-
 
NC_013739  Cwoe_4254  binding-protein-dependent transport systems inner membrane component  35.8 
 
 
283 aa  146  3e-34  Conexibacter woesei DSM 14684  Bacteria  normal  0.0441349  normal  0.902161 
 
 
-
 
NC_012669  Bcav_3788  binding-protein-dependent transport systems inner membrane component  39.29 
 
 
317 aa  144  1e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0255815  normal 
 
 
-
 
NC_010338  Caul_1260  binding-protein-dependent transport systems inner membrane component  44.35 
 
 
252 aa  144  2e-33  Caulobacter sp. K31  Bacteria  normal  0.21476  normal  0.0147088 
 
 
-
 
NC_011894  Mnod_2985  binding-protein-dependent transport systems inner membrane component  39.59 
 
 
273 aa  144  2e-33  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3118  binding-protein dependent transport system inner membrane protein  36.07 
 
 
284 aa  144  2e-33  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0770  binding-protein-dependent transport systems inner membrane component  39.75 
 
 
273 aa  141  9.999999999999999e-33  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_2033  binding-protein-dependent transport systems inner membrane component  40.97 
 
 
275 aa  141  9.999999999999999e-33  Haliangium ochraceum DSM 14365  Bacteria  normal  0.0253714  normal  0.258175 
 
 
-
 
NC_007802  Jann_3753  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
268 aa  140  1.9999999999999998e-32  Jannaschia sp. CCS1  Bacteria  normal  0.333865  normal 
 
 
-
 
NC_013946  Mrub_1076  ABC transporter-like protein  37.13 
 
 
488 aa  138  7.999999999999999e-32  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.276573 
 
 
-
 
NC_013739  Cwoe_3810  binding-protein-dependent transport systems inner membrane component  31.51 
 
 
258 aa  138  1e-31  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.42897 
 
 
-
 
NC_010623  Bphy_3181  binding-protein-dependent transport systems inner membrane component  36.91 
 
 
277 aa  136  3.0000000000000003e-31  Burkholderia phymatum STM815  Bacteria  normal  0.0283642  normal 
 
 
-
 
NC_013223  Dret_2296  binding-protein-dependent transport systems inner membrane component  37.29 
 
 
250 aa  135  9e-31  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_009784  VIBHAR_06840  ABC-type nitrate/sulfonate/bicarbonate transport system permease component  36.32 
 
 
266 aa  134  9.999999999999999e-31  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013521  Sked_17280  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  35.27 
 
 
325 aa  132  5e-30  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.158115  normal  0.544115 
 
 
-
 
NC_013457  VEA_000865  hydroxymethylpyrimidine ABC transporter transmembrane component  35.17 
 
 
266 aa  132  6e-30  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_0814  binding-protein-dependent transport systems inner membrane component  33.46 
 
 
270 aa  132  6.999999999999999e-30  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1095  binding-protein-dependent transport systems inner membrane component  29.05 
 
 
255 aa  131  9e-30  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009921  Franean1_3891  binding-protein-dependent transport systems inner membrane component  38.74 
 
 
300 aa  132  9e-30  Frankia sp. EAN1pec  Bacteria  hitchhiker  0.000896674  normal  0.103005 
 
 
-
 
NC_007778  RPB_3093  binding-protein dependent transport system inner membrane protein  34.3 
 
 
259 aa  131  1.0000000000000001e-29  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.942666 
 
 
-
 
NC_009921  Franean1_3131  binding-protein-dependent transport systems inner membrane component  33.62 
 
 
281 aa  130  2.0000000000000002e-29  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_1393  binding-protein-dependent transport systems inner membrane component  33.63 
 
 
254 aa  130  3e-29  Meiothermus ruber DSM 1279  Bacteria  normal  0.302994  normal  0.157809 
 
 
-
 
NC_009654  Mmwyl1_2703  binding-protein-dependent transport systems inner membrane component  36.24 
 
 
263 aa  129  3e-29  Marinomonas sp. MWYL1  Bacteria  normal  0.88688  normal 
 
 
-
 
NC_013441  Gbro_0259  binding-protein-dependent transport systems inner membrane component  37.39 
 
 
453 aa  129  5.0000000000000004e-29  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_4504  binding-protein-dependent transport systems inner membrane component  36.32 
 
 
281 aa  128  9.000000000000001e-29  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_0394  binding-protein-dependent transport systems inner membrane component  31.11 
 
 
259 aa  127  1.0000000000000001e-28  Cupriavidus metallidurans CH34  Bacteria  normal  hitchhiker  0.00657833 
 
 
-
 
NC_010002  Daci_1140  binding-protein-dependent transport systems inner membrane component  29.55 
 
 
255 aa  127  2.0000000000000002e-28  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_0620  binding-protein-dependent transport systems inner membrane component  36.18 
 
 
258 aa  127  2.0000000000000002e-28  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_2127  binding-protein-dependent transport systems inner membrane component  32.73 
 
 
255 aa  127  2.0000000000000002e-28  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.427162 
 
 
-
 
NC_009952  Dshi_2545  binding-protein-dependent transport system protein  32.13 
 
 
287 aa  126  3e-28  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.240068  normal  0.521676 
 
 
-
 
NC_008148  Rxyl_3036  binding-protein-dependent transport systems inner membrane component  33.91 
 
 
266 aa  126  3e-28  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_3961  binding-protein-dependent transport systems inner membrane component  29.67 
 
 
256 aa  125  5e-28  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_012792  Vapar_6052  binding-protein-dependent transport systems inner membrane component  32.34 
 
 
274 aa  125  6e-28  Variovorax paradoxus S110  Bacteria  normal  0.0454164  n/a   
 
 
-
 
NC_009050  Rsph17029_3904  binding-protein-dependent transport systems inner membrane component  33.94 
 
 
281 aa  125  9e-28  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_0926  binding-protein-dependent transport systems inner membrane component  36 
 
 
249 aa  124  1e-27  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.04587  n/a   
 
 
-
 
NC_009664  Krad_3112  binding-protein-dependent transport systems inner membrane component  37.22 
 
 
253 aa  124  1e-27  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0371548 
 
 
-
 
NC_008752  Aave_1091  binding-protein-dependent transport systems inner membrane component  30.53 
 
 
258 aa  124  1e-27  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0347556  normal 
 
 
-
 
NC_007494  RSP_3166  ABC transporter, inner membrane subunit  33.58 
 
 
281 aa  124  2e-27  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_02100  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  35.56 
 
 
308 aa  123  3e-27  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_13670  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  31.6 
 
 
249 aa  122  5e-27  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_1494  binding-protein-dependent transport systems inner membrane component  33.99 
 
 
281 aa  122  5e-27  Ruegeria sp. TM1040  Bacteria  normal  0.58323  normal 
 
 
-
 
NC_013093  Amir_2627  binding-protein-dependent transport systems inner membrane component  35.04 
 
 
288 aa  122  6e-27  Actinosynnema mirum DSM 43827  Bacteria  normal  0.752734  n/a   
 
 
-
 
NC_007778  RPB_3099  binding-protein dependent transport system inner membrane protein  34.89 
 
 
261 aa  121  9.999999999999999e-27  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.578785 
 
 
-
 
NC_013743  Htur_0667  binding-protein-dependent transport systems inner membrane component  34.25 
 
 
299 aa  120  1.9999999999999998e-26  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_008786  Veis_3506  binding-protein-dependent transport systems inner membrane component  34.62 
 
 
282 aa  119  3.9999999999999996e-26  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0528385  normal  0.0939424 
 
 
-
 
NC_009524  PsycPRwf_1445  binding-protein-dependent transport systems inner membrane component  33.47 
 
 
259 aa  119  4.9999999999999996e-26  Psychrobacter sp. PRwf-1  Bacteria  normal  normal  0.318112 
 
 
-
 
NC_008025  Dgeo_0111  ABC transporter related  37.61 
 
 
493 aa  119  6e-26  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_012852  Rleg_6281  binding-protein-dependent transport systems inner membrane component  34.98 
 
 
256 aa  119  7e-26  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.783663  normal 
 
 
-
 
NC_008148  Rxyl_2084  binding-protein-dependent transport systems inner membrane component  38.25 
 
 
260 aa  118  9e-26  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.566245  n/a   
 
 
-
 
NC_009636  Smed_2372  binding-protein-dependent transport systems inner membrane component  32.8 
 
 
289 aa  117  9.999999999999999e-26  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.239724 
 
 
-
 
NC_008726  Mvan_3142  binding-protein-dependent transport systems inner membrane component  33.78 
 
 
264 aa  118  9.999999999999999e-26  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.32312  normal  0.0411868 
 
 
-
 
NC_011988  Avi_5406  ABC transporter membrane spanning protein  34.21 
 
 
251 aa  117  9.999999999999999e-26  Agrobacterium vitis S4  Bacteria  normal  0.408693  n/a   
 
 
-
 
NC_011365  Gdia_3269  binding-protein-dependent transport systems inner membrane component  37.12 
 
 
253 aa  116  3e-25  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.283078  normal 
 
 
-
 
NC_011989  Avi_3460  ABC transporter membrane spanning protein  32.3 
 
 
288 aa  116  5e-25  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_3562  binding-protein-dependent transport systems inner membrane component  39.46 
 
 
263 aa  116  5e-25  Opitutus terrae PB90-1  Bacteria  normal  0.120198  normal  0.916816 
 
 
-
 
NC_009720  Xaut_3758  binding-protein-dependent transport systems inner membrane component  30.97 
 
 
256 aa  115  5e-25  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_1373  binding-protein-dependent transport systems inner membrane component  32.06 
 
 
303 aa  114  1.0000000000000001e-24  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.674946  normal  0.833857 
 
 
-
 
NC_011830  Dhaf_0877  binding-protein-dependent transport systems inner membrane component  29.29 
 
 
260 aa  115  1.0000000000000001e-24  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.00000000112184  n/a   
 
 
-
 
NC_007643  Rru_A3455  binding-protein dependent transport system inner membrane protein  32.68 
 
 
322 aa  115  1.0000000000000001e-24  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.833863  n/a   
 
 
-
 
NC_008254  Meso_2046  binding-protein-dependent transport systems inner membrane component  32.93 
 
 
286 aa  114  2.0000000000000002e-24  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011313  VSAL_II0488  putative binding protein-dependent transport system, membrane component  33.59 
 
 
272 aa  113  3e-24  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.970837  n/a   
 
 
-
 
NC_007963  Csal_1933  binding-protein-dependent transport systems inner membrane component  33.72 
 
 
255 aa  112  5e-24  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.323499  n/a   
 
 
-
 
NC_013525  Tter_0403  binding-protein-dependent transport systems inner membrane component  31.65 
 
 
271 aa  112  6e-24  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009012  Cthe_2116  binding-protein-dependent transport systems inner membrane component  29.54 
 
 
253 aa  112  7.000000000000001e-24  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_013203  Apar_0391  binding-protein-dependent transport systems inner membrane component  30.13 
 
 
257 aa  112  9e-24  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
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