More than 300 homologs were found in PanDaTox collection
for query gene RPD_0258 on replicon NC_007958
Organism: Rhodopseudomonas palustris BisB5



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007958  RPD_0258  binding-protein-dependent transport systems inner membrane component  100 
 
 
274 aa  521  1e-147  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.750925 
 
 
-
 
NC_007964  Nham_0427  binding-protein-dependent transport systems inner membrane component  84.15 
 
 
279 aa  384  1e-106  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_0333  binding-protein dependent transport system inner membrane protein  81.18 
 
 
278 aa  377  1e-104  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_0469  binding-protein-dependent transport systems inner membrane component  83.21 
 
 
274 aa  373  1e-102  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.858995  n/a   
 
 
-
 
NC_007778  RPB_0572  binding-protein-dependent transport systems inner membrane component  88.32 
 
 
274 aa  350  1e-95  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0627389  normal  0.343483 
 
 
-
 
NC_007925  RPC_0572  binding-protein-dependent transport systems inner membrane component  81.85 
 
 
276 aa  347  1e-94  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_7480  ABC transporter permease  78.89 
 
 
271 aa  330  1e-89  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.477102  normal  0.131238 
 
 
-
 
NC_007802  Jann_1473  binding-protein-dependent transport systems inner membrane component  58.66 
 
 
283 aa  285  4e-76  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_1382  binding-protein-dependent transport systems inner membrane component  58.09 
 
 
285 aa  283  2.0000000000000002e-75  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.13305  normal 
 
 
-
 
NC_009719  Plav_0891  binding-protein-dependent transport systems inner membrane component  57.59 
 
 
268 aa  273  2.0000000000000002e-72  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.223421 
 
 
-
 
NC_008312  Tery_1625  binding-protein-dependent transport systems inner membrane component  54.77 
 
 
285 aa  271  9e-72  Trichodesmium erythraeum IMS101  Bacteria  normal  0.0792607  normal  0.95709 
 
 
-
 
NC_007953  Bxe_C0801  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  53.73 
 
 
298 aa  264  1e-69  Burkholderia xenovorans LB400  Bacteria  normal  0.0745387  normal 
 
 
-
 
NC_011989  Avi_3552  ABC transporter membrane spanning protein  57.42 
 
 
285 aa  261  1e-68  Agrobacterium vitis S4  Bacteria  normal  0.0625026  n/a   
 
 
-
 
NC_009668  Oant_3871  binding-protein-dependent transport systems inner membrane component  53.12 
 
 
280 aa  258  6e-68  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.208081  n/a   
 
 
-
 
NC_011369  Rleg2_1676  binding-protein-dependent transport systems inner membrane component  50.87 
 
 
287 aa  254  7e-67  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  decreased coverage  0.00381914  normal 
 
 
-
 
NC_012848  Rleg_4665  binding-protein-dependent transport systems inner membrane component  52.57 
 
 
284 aa  254  1.0000000000000001e-66  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.65192 
 
 
-
 
NC_012791  Vapar_4760  binding-protein-dependent transport systems inner membrane component  51.18 
 
 
267 aa  250  2e-65  Variovorax paradoxus S110  Bacteria  normal  0.318809  n/a   
 
 
-
 
NC_009485  BBta_1263  ABC transporter permease  46.56 
 
 
262 aa  235  5.0000000000000005e-61  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.165267 
 
 
-
 
NC_012791  Vapar_5134  binding-protein-dependent transport systems inner membrane component  54.26 
 
 
294 aa  235  6e-61  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_1164  binding-protein-dependent transport systems inner membrane component  61.23 
 
 
260 aa  233  4.0000000000000004e-60  Methylocella silvestris BL2  Bacteria  n/a    normal  0.233018 
 
 
-
 
NC_008825  Mpe_A3414  ATP-binding protein of ABC transporter  52.94 
 
 
280 aa  233  4.0000000000000004e-60  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.24016 
 
 
-
 
NC_007951  Bxe_A2015  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  51.59 
 
 
252 aa  226  3e-58  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_3145  binding-protein-dependent transport systems inner membrane component  57.63 
 
 
298 aa  224  9e-58  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.433007  normal  0.243208 
 
 
-
 
NC_010581  Bind_1091  binding-protein-dependent transport systems inner membrane component  58.33 
 
 
262 aa  221  9.999999999999999e-57  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_2038  binding-protein-dependent transport systems inner membrane component  48.36 
 
 
264 aa  218  1e-55  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.697058  normal  0.743835 
 
 
-
 
NC_010172  Mext_1719  binding-protein-dependent transport systems inner membrane component  48.36 
 
 
264 aa  217  2e-55  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_1095  binding-protein-dependent transport systems inner membrane component  49.36 
 
 
264 aa  215  5.9999999999999996e-55  Methylobacterium populi BJ001  Bacteria  normal  0.0240883  normal  0.166534 
 
 
-
 
NC_002947  PP_3210  ABC transporter, permease protein  50.94 
 
 
267 aa  214  9.999999999999999e-55  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_2588  binding-protein-dependent transport systems inner membrane component  50.19 
 
 
267 aa  214  9.999999999999999e-55  Pseudomonas putida W619  Bacteria  normal  normal  0.417353 
 
 
-
 
NC_009484  Acry_0832  binding-protein-dependent transport systems inner membrane component  54.55 
 
 
254 aa  184  2.0000000000000003e-45  Acidiphilium cryptum JF-5  Bacteria  normal  0.404323  n/a   
 
 
-
 
NC_014148  Plim_2867  binding-protein-dependent transport systems inner membrane component  34.8 
 
 
277 aa  146  3e-34  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_1862  binding-protein-dependent transport systems inner membrane component  35.29 
 
 
257 aa  143  3e-33  Variovorax paradoxus S110  Bacteria  normal  0.116723  n/a   
 
 
-
 
NC_013440  Hoch_2033  binding-protein-dependent transport systems inner membrane component  46.26 
 
 
275 aa  142  5e-33  Haliangium ochraceum DSM 14365  Bacteria  normal  0.0253714  normal  0.258175 
 
 
-
 
NC_008786  Veis_0620  binding-protein-dependent transport systems inner membrane component  36.6 
 
 
254 aa  140  1.9999999999999998e-32  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.63161  normal 
 
 
-
 
NC_010338  Caul_1260  binding-protein-dependent transport systems inner membrane component  41.56 
 
 
252 aa  134  9.999999999999999e-31  Caulobacter sp. K31  Bacteria  normal  0.21476  normal  0.0147088 
 
 
-
 
NC_012792  Vapar_6052  binding-protein-dependent transport systems inner membrane component  35.09 
 
 
274 aa  130  2.0000000000000002e-29  Variovorax paradoxus S110  Bacteria  normal  0.0454164  n/a   
 
 
-
 
NC_013946  Mrub_1393  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
254 aa  128  8.000000000000001e-29  Meiothermus ruber DSM 1279  Bacteria  normal  0.302994  normal  0.157809 
 
 
-
 
NC_009669  Oant_4580  binding-protein-dependent transport systems inner membrane component  35.83 
 
 
257 aa  128  1.0000000000000001e-28  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_3460  ABC transporter membrane spanning protein  35.12 
 
 
288 aa  126  4.0000000000000003e-28  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_3810  binding-protein-dependent transport systems inner membrane component  30.86 
 
 
258 aa  125  1e-27  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.42897 
 
 
-
 
NC_007802  Jann_3753  binding-protein-dependent transport systems inner membrane component  31.3 
 
 
268 aa  124  2e-27  Jannaschia sp. CCS1  Bacteria  normal  0.333865  normal 
 
 
-
 
NC_013521  Sked_02100  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  36.26 
 
 
308 aa  123  3e-27  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_3758  binding-protein-dependent transport systems inner membrane component  29.29 
 
 
256 aa  122  4e-27  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_2545  binding-protein-dependent transport system protein  33.83 
 
 
287 aa  122  7e-27  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.240068  normal  0.521676 
 
 
-
 
NC_013521  Sked_17280  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  35.68 
 
 
325 aa  121  9.999999999999999e-27  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.158115  normal  0.544115 
 
 
-
 
NC_009485  BBta_7629  putative ABC transporter permease protein  36.53 
 
 
282 aa  121  9.999999999999999e-27  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.262472  normal  0.441686 
 
 
-
 
NC_014210  Ndas_4504  binding-protein-dependent transport systems inner membrane component  42.29 
 
 
281 aa  120  1.9999999999999998e-26  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_1488  binding-protein-dependent transport systems inner membrane component  38.43 
 
 
247 aa  120  1.9999999999999998e-26  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_3205  binding-protein-dependent transport systems inner membrane component  32.68 
 
 
265 aa  120  1.9999999999999998e-26  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.000457845  n/a   
 
 
-
 
NC_007778  RPB_3093  binding-protein dependent transport system inner membrane protein  34.41 
 
 
259 aa  119  3.9999999999999996e-26  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.942666 
 
 
-
 
NC_011369  Rleg2_3042  binding-protein-dependent transport systems inner membrane component  31.84 
 
 
375 aa  119  7.999999999999999e-26  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_3099  binding-protein dependent transport system inner membrane protein  36.28 
 
 
261 aa  118  9.999999999999999e-26  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.578785 
 
 
-
 
NC_009921  Franean1_3131  binding-protein-dependent transport systems inner membrane component  31.62 
 
 
281 aa  118  9.999999999999999e-26  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_3112  binding-protein-dependent transport systems inner membrane component  39.44 
 
 
253 aa  117  1.9999999999999998e-25  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0371548 
 
 
-
 
NC_013739  Cwoe_4254  binding-protein-dependent transport systems inner membrane component  31.77 
 
 
283 aa  117  1.9999999999999998e-25  Conexibacter woesei DSM 14684  Bacteria  normal  0.0441349  normal  0.902161 
 
 
-
 
NC_013441  Gbro_0259  binding-protein-dependent transport systems inner membrane component  35.18 
 
 
453 aa  117  1.9999999999999998e-25  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_2985  binding-protein-dependent transport systems inner membrane component  35.66 
 
 
273 aa  116  3e-25  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_3297  binding-protein-dependent transport systems inner membrane component  31.09 
 
 
375 aa  116  3e-25  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.149558 
 
 
-
 
NC_009636  Smed_2372  binding-protein-dependent transport systems inner membrane component  33.47 
 
 
289 aa  116  3.9999999999999997e-25  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.239724 
 
 
-
 
NC_012669  Bcav_3788  binding-protein-dependent transport systems inner membrane component  36.33 
 
 
317 aa  115  7.999999999999999e-25  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0255815  normal 
 
 
-
 
NC_008254  Meso_2046  binding-protein-dependent transport systems inner membrane component  34.69 
 
 
286 aa  115  7.999999999999999e-25  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_007509  Bcep18194_C7650  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  38.36 
 
 
247 aa  115  8.999999999999998e-25  Burkholderia sp. 383  Bacteria  normal  0.621765  normal 
 
 
-
 
NC_009952  Dshi_1373  binding-protein-dependent transport systems inner membrane component  30.77 
 
 
303 aa  114  1.0000000000000001e-24  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.674946  normal  0.833857 
 
 
-
 
NC_012791  Vapar_0620  binding-protein-dependent transport systems inner membrane component  34.85 
 
 
258 aa  115  1.0000000000000001e-24  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_2281  binding-protein-dependent transport systems inner membrane component  32.79 
 
 
281 aa  115  1.0000000000000001e-24  Frankia sp. EAN1pec  Bacteria  normal  0.695693  normal  0.331928 
 
 
-
 
NC_008044  TM1040_1494  binding-protein-dependent transport systems inner membrane component  34.3 
 
 
281 aa  114  2.0000000000000002e-24  Ruegeria sp. TM1040  Bacteria  normal  0.58323  normal 
 
 
-
 
NC_014212  Mesil_0817  ABC transporter related protein  36.32 
 
 
492 aa  114  2.0000000000000002e-24  Meiothermus silvanus DSM 9946  Bacteria  normal  0.309085  normal  0.730271 
 
 
-
 
NC_009050  Rsph17029_3904  binding-protein-dependent transport systems inner membrane component  36.92 
 
 
281 aa  114  2.0000000000000002e-24  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_2762  binding-protein-dependent transport systems inner membrane component  34.7 
 
 
250 aa  113  3e-24  Conexibacter woesei DSM 14684  Bacteria  normal  0.0247808  normal  0.0244453 
 
 
-
 
NC_007494  RSP_3166  ABC transporter, inner membrane subunit  37.38 
 
 
281 aa  113  4.0000000000000004e-24  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3118  binding-protein dependent transport system inner membrane protein  30.96 
 
 
284 aa  113  4.0000000000000004e-24  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_0797  ABC transporter, permease protein, putative  35.39 
 
 
250 aa  112  5e-24  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0643  binding-protein-dependent transport systems inner membrane component  34.98 
 
 
251 aa  112  6e-24  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0784  putative ABC transporter, permease protein  33.74 
 
 
250 aa  112  7.000000000000001e-24  Bacillus cereus B4264  Bacteria  normal  0.605831  n/a   
 
 
-
 
NC_013525  Tter_0403  binding-protein-dependent transport systems inner membrane component  35.95 
 
 
271 aa  112  8.000000000000001e-24  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013093  Amir_2627  binding-protein-dependent transport systems inner membrane component  33.21 
 
 
288 aa  112  9e-24  Actinosynnema mirum DSM 43827  Bacteria  normal  0.752734  n/a   
 
 
-
 
NC_008148  Rxyl_2084  binding-protein-dependent transport systems inner membrane component  40 
 
 
260 aa  111  1.0000000000000001e-23  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.566245  n/a   
 
 
-
 
NC_009667  Oant_0344  binding-protein-dependent transport systems inner membrane component  31.93 
 
 
286 aa  110  2.0000000000000002e-23  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.113814  n/a   
 
 
-
 
NC_010511  M446_0770  binding-protein-dependent transport systems inner membrane component  36.55 
 
 
273 aa  111  2.0000000000000002e-23  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B4547  putative ABC transporter, permease protein  34.57 
 
 
251 aa  110  3e-23  Bacillus cereus G9842  Bacteria  normal  0.113137  normal  0.441246 
 
 
-
 
NC_005957  BT9727_0637  ABC transporter, permease  33.88 
 
 
250 aa  110  3e-23  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00537874  n/a   
 
 
-
 
NC_009674  Bcer98_0614  binding-protein-dependent transport systems inner membrane component  34.16 
 
 
250 aa  110  3e-23  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0637  ABC transporter, permease  33.88 
 
 
250 aa  109  4.0000000000000004e-23  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0804  putative ABC transporter, permease protein  32.94 
 
 
250 aa  109  4.0000000000000004e-23  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.22036e-46 
 
 
-
 
NC_009523  RoseRS_0669  binding-protein-dependent transport systems inner membrane component  39.02 
 
 
272 aa  109  4.0000000000000004e-23  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0848141 
 
 
-
 
NC_005945  BAS0693  ABC transporter permease  33.88 
 
 
250 aa  109  5e-23  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0727  ABC transporter permease  33.88 
 
 
250 aa  109  5e-23  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0363276  n/a   
 
 
-
 
NC_011988  Avi_5406  ABC transporter membrane spanning protein  31.95 
 
 
251 aa  109  5e-23  Agrobacterium vitis S4  Bacteria  normal  0.408693  n/a   
 
 
-
 
NC_013223  Dret_2296  binding-protein-dependent transport systems inner membrane component  35.39 
 
 
250 aa  109  5e-23  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_3419  binding-protein-dependent transport systems inner membrane component  32.93 
 
 
258 aa  108  7.000000000000001e-23  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.121812  n/a   
 
 
-
 
NC_011658  BCAH187_A0881  putative ABC transporter, permease protein  34.57 
 
 
251 aa  108  8.000000000000001e-23  Bacillus cereus AH187  Bacteria  hitchhiker  0.00328051  n/a   
 
 
-
 
NC_014212  Mesil_2099  binding-protein-dependent transport systems inner membrane component  34.89 
 
 
306 aa  107  2e-22  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_2116  binding-protein-dependent transport systems inner membrane component  28.76 
 
 
253 aa  107  2e-22  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_0814  binding-protein-dependent transport systems inner membrane component  30.26 
 
 
270 aa  107  3e-22  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_3181  binding-protein-dependent transport systems inner membrane component  36.96 
 
 
277 aa  106  3e-22  Burkholderia phymatum STM815  Bacteria  normal  0.0283642  normal 
 
 
-
 
NC_008726  Mvan_3142  binding-protein-dependent transport systems inner membrane component  34.16 
 
 
264 aa  106  5e-22  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.32312  normal  0.0411868 
 
 
-
 
NC_009654  Mmwyl1_2703  binding-protein-dependent transport systems inner membrane component  31.25 
 
 
263 aa  105  6e-22  Marinomonas sp. MWYL1  Bacteria  normal  0.88688  normal 
 
 
-
 
NC_012880  Dd703_0037  binding-protein-dependent transport systems inner membrane component  33.61 
 
 
362 aa  105  8e-22  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_3891  binding-protein-dependent transport systems inner membrane component  35.25 
 
 
300 aa  105  8e-22  Frankia sp. EAN1pec  Bacteria  hitchhiker  0.000896674  normal  0.103005 
 
 
-
 
NC_007643  Rru_A3455  binding-protein dependent transport system inner membrane protein  33.74 
 
 
322 aa  104  2e-21  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.833863  n/a   
 
 
-
 
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