More than 300 homologs were found in PanDaTox collection
for query gene Dshi_1373 on replicon NC_009952
Organism: Dinoroseobacter shibae DFL 12



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009952  Dshi_1373  binding-protein-dependent transport systems inner membrane component  100 
 
 
303 aa  588  1e-167  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.674946  normal  0.833857 
 
 
-
 
NC_008044  TM1040_1494  binding-protein-dependent transport systems inner membrane component  73.53 
 
 
281 aa  382  1e-105  Ruegeria sp. TM1040  Bacteria  normal  0.58323  normal 
 
 
-
 
NC_009428  Rsph17025_1465  binding-protein-dependent transport systems inner membrane component  72.16 
 
 
283 aa  360  2e-98  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_1813  binding-protein-dependent transport systems inner membrane component  73.26 
 
 
283 aa  359  4e-98  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.210707  normal  0.296576 
 
 
-
 
NC_007493  RSP_0180  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  72.89 
 
 
283 aa  358  7e-98  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.105797  n/a   
 
 
-
 
NC_009636  Smed_2372  binding-protein-dependent transport systems inner membrane component  66.31 
 
 
289 aa  354  1e-96  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.239724 
 
 
-
 
NC_008254  Meso_2046  binding-protein-dependent transport systems inner membrane component  68.09 
 
 
286 aa  349  4e-95  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_3460  ABC transporter membrane spanning protein  62.45 
 
 
288 aa  346  3e-94  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_3042  binding-protein-dependent transport systems inner membrane component  61.29 
 
 
375 aa  343  2e-93  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3297  binding-protein-dependent transport systems inner membrane component  61.29 
 
 
375 aa  338  5.9999999999999996e-92  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.149558 
 
 
-
 
NC_009667  Oant_0344  binding-protein-dependent transport systems inner membrane component  63.71 
 
 
286 aa  336  1.9999999999999998e-91  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.113814  n/a   
 
 
-
 
NC_009485  BBta_6031  putative ABC transporter, permease protein  61.94 
 
 
325 aa  322  7e-87  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_2700  binding-protein-dependent transport systems inner membrane component  64.49 
 
 
316 aa  302  5.000000000000001e-81  Jannaschia sp. CCS1  Bacteria  normal  0.505407  normal  0.565906 
 
 
-
 
NC_007643  Rru_A3455  binding-protein dependent transport system inner membrane protein  59.76 
 
 
322 aa  294  1e-78  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.833863  n/a   
 
 
-
 
NC_011757  Mchl_2050  binding-protein-dependent transport systems inner membrane component  62.73 
 
 
321 aa  276  4e-73  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.577348 
 
 
-
 
NC_010172  Mext_1731  binding-protein-dependent transport systems inner membrane component  62.27 
 
 
321 aa  274  1.0000000000000001e-72  Methylobacterium extorquens PA1  Bacteria  normal  0.443029  normal 
 
 
-
 
NC_010725  Mpop_1083  binding-protein-dependent transport systems inner membrane component  61.37 
 
 
321 aa  268  7e-71  Methylobacterium populi BJ001  Bacteria  normal  0.148611  normal  0.032179 
 
 
-
 
NC_012880  Dd703_0037  binding-protein-dependent transport systems inner membrane component  52.03 
 
 
362 aa  254  9e-67  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_1883  binding-protein-dependent transport systems inner membrane component  45.63 
 
 
322 aa  208  1e-52  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.167871 
 
 
-
 
NC_014212  Mesil_2099  binding-protein-dependent transport systems inner membrane component  46.05 
 
 
306 aa  203  2e-51  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_3099  binding-protein dependent transport system inner membrane protein  33.98 
 
 
261 aa  148  1.0000000000000001e-34  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.578785 
 
 
-
 
NC_011831  Cagg_3116  binding-protein-dependent transport systems inner membrane component  41.05 
 
 
272 aa  147  2.0000000000000003e-34  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.025765  normal 
 
 
-
 
NC_013525  Tter_1221  binding-protein-dependent transport systems inner membrane component  35.92 
 
 
246 aa  144  2e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009719  Plav_0891  binding-protein-dependent transport systems inner membrane component  34.25 
 
 
268 aa  141  9.999999999999999e-33  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.223421 
 
 
-
 
NC_009523  RoseRS_0669  binding-protein-dependent transport systems inner membrane component  37.96 
 
 
272 aa  135  6.0000000000000005e-31  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0848141 
 
 
-
 
NC_013739  Cwoe_4254  binding-protein-dependent transport systems inner membrane component  33.58 
 
 
283 aa  133  3e-30  Conexibacter woesei DSM 14684  Bacteria  normal  0.0441349  normal  0.902161 
 
 
-
 
NC_007778  RPB_3118  binding-protein dependent transport system inner membrane protein  33.62 
 
 
284 aa  133  3.9999999999999996e-30  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_13670  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  32.66 
 
 
249 aa  132  1.0000000000000001e-29  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_3753  binding-protein-dependent transport systems inner membrane component  32.38 
 
 
268 aa  130  2.0000000000000002e-29  Jannaschia sp. CCS1  Bacteria  normal  0.333865  normal 
 
 
-
 
NC_009767  Rcas_0666  binding-protein-dependent transport systems inner membrane component  36.58 
 
 
272 aa  130  2.0000000000000002e-29  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_0427  binding-protein-dependent transport systems inner membrane component  32.95 
 
 
279 aa  131  2.0000000000000002e-29  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_3131  binding-protein-dependent transport systems inner membrane component  36.7 
 
 
281 aa  130  2.0000000000000002e-29  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3934  binding-protein-dependent transport systems inner membrane component  34.07 
 
 
278 aa  130  3e-29  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.421742  normal 
 
 
-
 
NC_007406  Nwi_0333  binding-protein dependent transport system inner membrane protein  33.21 
 
 
278 aa  128  1.0000000000000001e-28  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_3645  binding-protein-dependent transport systems inner membrane component  32.59 
 
 
268 aa  127  2.0000000000000002e-28  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_0877  binding-protein-dependent transport systems inner membrane component  29.92 
 
 
260 aa  127  2.0000000000000002e-28  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.00000000112184  n/a   
 
 
-
 
NC_014210  Ndas_4504  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
281 aa  127  2.0000000000000002e-28  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009669  Oant_4580  binding-protein-dependent transport systems inner membrane component  33.46 
 
 
257 aa  126  4.0000000000000003e-28  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_2627  binding-protein-dependent transport systems inner membrane component  37.44 
 
 
288 aa  126  4.0000000000000003e-28  Actinosynnema mirum DSM 43827  Bacteria  normal  0.752734  n/a   
 
 
-
 
NC_007953  Bxe_C0801  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  32.55 
 
 
298 aa  126  5e-28  Burkholderia xenovorans LB400  Bacteria  normal  0.0745387  normal 
 
 
-
 
NC_012791  Vapar_1862  binding-protein-dependent transport systems inner membrane component  31.62 
 
 
257 aa  125  7e-28  Variovorax paradoxus S110  Bacteria  normal  0.116723  n/a   
 
 
-
 
NC_011894  Mnod_2985  binding-protein-dependent transport systems inner membrane component  34.02 
 
 
273 aa  125  9e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_3205  binding-protein-dependent transport systems inner membrane component  34.63 
 
 
265 aa  124  2e-27  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.000457845  n/a   
 
 
-
 
NC_009485  BBta_1169  putative ABC transporter permease protein  31.82 
 
 
279 aa  124  2e-27  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0770  binding-protein-dependent transport systems inner membrane component  34.3 
 
 
273 aa  123  3e-27  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_0620  binding-protein-dependent transport systems inner membrane component  32.17 
 
 
254 aa  123  5e-27  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.63161  normal 
 
 
-
 
NC_013223  Dret_2296  binding-protein-dependent transport systems inner membrane component  34.75 
 
 
250 aa  122  5e-27  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_0620  binding-protein-dependent transport systems inner membrane component  33.48 
 
 
258 aa  122  9e-27  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0797  ABC transporter, permease protein, putative  34.33 
 
 
250 aa  121  9.999999999999999e-27  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_007509  Bcep18194_C7650  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  33.47 
 
 
247 aa  121  9.999999999999999e-27  Burkholderia sp. 383  Bacteria  normal  0.621765  normal 
 
 
-
 
NC_013235  Namu_1668  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
288 aa  120  1.9999999999999998e-26  Nakamurella multipartita DSM 44233  Bacteria  normal  0.173855  normal  0.365472 
 
 
-
 
NC_011658  BCAH187_A0881  putative ABC transporter, permease protein  33.47 
 
 
251 aa  120  1.9999999999999998e-26  Bacillus cereus AH187  Bacteria  hitchhiker  0.00328051  n/a   
 
 
-
 
NC_012792  Vapar_6052  binding-protein-dependent transport systems inner membrane component  29.61 
 
 
274 aa  120  3e-26  Variovorax paradoxus S110  Bacteria  normal  0.0454164  n/a   
 
 
-
 
NC_011772  BCG9842_B4547  putative ABC transporter, permease protein  33.48 
 
 
251 aa  119  4.9999999999999996e-26  Bacillus cereus G9842  Bacteria  normal  0.113137  normal  0.441246 
 
 
-
 
NC_010681  Bphyt_1488  binding-protein-dependent transport systems inner membrane component  36 
 
 
247 aa  119  7e-26  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_2116  binding-protein-dependent transport systems inner membrane component  32.08 
 
 
253 aa  119  7e-26  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0693  ABC transporter permease  32.24 
 
 
250 aa  119  7.999999999999999e-26  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0637  ABC transporter, permease  32.24 
 
 
250 aa  119  7.999999999999999e-26  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00537874  n/a   
 
 
-
 
NC_006274  BCZK0637  ABC transporter, permease  32.24 
 
 
250 aa  119  7.999999999999999e-26  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0727  ABC transporter permease  32.24 
 
 
250 aa  119  7.999999999999999e-26  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0363276  n/a   
 
 
-
 
NC_011773  BCAH820_0804  putative ABC transporter, permease protein  32.24 
 
 
250 aa  119  7.999999999999999e-26  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.22036e-46 
 
 
-
 
NC_013525  Tter_0403  binding-protein-dependent transport systems inner membrane component  30.47 
 
 
271 aa  118  9.999999999999999e-26  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009664  Krad_3112  binding-protein-dependent transport systems inner membrane component  37.44 
 
 
253 aa  118  9.999999999999999e-26  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0371548 
 
 
-
 
NC_010184  BcerKBAB4_0643  binding-protein-dependent transport systems inner membrane component  33.2 
 
 
251 aa  118  9.999999999999999e-26  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_2574  binding-protein-dependent transport systems inner membrane component  37.62 
 
 
252 aa  118  9.999999999999999e-26  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A0784  putative ABC transporter, permease protein  33.06 
 
 
250 aa  118  9.999999999999999e-26  Bacillus cereus B4264  Bacteria  normal  0.605831  n/a   
 
 
-
 
NC_007963  Csal_1933  binding-protein-dependent transport systems inner membrane component  29.8 
 
 
255 aa  117  1.9999999999999998e-25  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.323499  n/a   
 
 
-
 
NC_013515  Smon_0476  binding-protein-dependent transport systems inner membrane component  26.81 
 
 
249 aa  117  3e-25  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_011004  Rpal_0469  binding-protein-dependent transport systems inner membrane component  33.08 
 
 
274 aa  117  3e-25  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.858995  n/a   
 
 
-
 
NC_010172  Mext_1719  binding-protein-dependent transport systems inner membrane component  32.23 
 
 
264 aa  117  3e-25  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011313  VSAL_II0488  putative binding protein-dependent transport system, membrane component  31.62 
 
 
272 aa  116  3.9999999999999997e-25  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.970837  n/a   
 
 
-
 
NC_009784  VIBHAR_06840  ABC-type nitrate/sulfonate/bicarbonate transport system permease component  28.35 
 
 
266 aa  116  5e-25  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010623  Bphy_3181  binding-protein-dependent transport systems inner membrane component  29.66 
 
 
277 aa  116  5e-25  Burkholderia phymatum STM815  Bacteria  normal  0.0283642  normal 
 
 
-
 
NC_011757  Mchl_2038  binding-protein-dependent transport systems inner membrane component  31.38 
 
 
264 aa  116  5e-25  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.697058  normal  0.743835 
 
 
-
 
NC_013521  Sked_02100  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  32.74 
 
 
308 aa  116  5e-25  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_014148  Plim_2867  binding-protein-dependent transport systems inner membrane component  31.56 
 
 
277 aa  115  7.999999999999999e-25  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_3810  binding-protein-dependent transport systems inner membrane component  29.8 
 
 
258 aa  115  1.0000000000000001e-24  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.42897 
 
 
-
 
NC_009485  BBta_7629  putative ABC transporter permease protein  31.12 
 
 
282 aa  115  1.0000000000000001e-24  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.262472  normal  0.441686 
 
 
-
 
NC_013457  VEA_000865  hydroxymethylpyrimidine ABC transporter transmembrane component  28.74 
 
 
266 aa  115  1.0000000000000001e-24  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0435  binding-protein-dependent transport systems inner membrane component  28.1 
 
 
250 aa  115  1.0000000000000001e-24  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0614  binding-protein-dependent transport systems inner membrane component  31.98 
 
 
250 aa  113  4.0000000000000004e-24  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_1625  binding-protein-dependent transport systems inner membrane component  29.84 
 
 
285 aa  113  5e-24  Trichodesmium erythraeum IMS101  Bacteria  normal  0.0792607  normal  0.95709 
 
 
-
 
NC_011831  Cagg_1308  binding-protein-dependent transport systems inner membrane component  37.56 
 
 
254 aa  112  6e-24  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.0000169849 
 
 
-
 
NC_011365  Gdia_3269  binding-protein-dependent transport systems inner membrane component  31.9 
 
 
253 aa  111  1.0000000000000001e-23  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.283078  normal 
 
 
-
 
NC_011988  Avi_5406  ABC transporter membrane spanning protein  31.33 
 
 
251 aa  112  1.0000000000000001e-23  Agrobacterium vitis S4  Bacteria  normal  0.408693  n/a   
 
 
-
 
NC_009952  Dshi_2545  binding-protein-dependent transport system protein  34.54 
 
 
287 aa  112  1.0000000000000001e-23  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.240068  normal  0.521676 
 
 
-
 
NC_010725  Mpop_1095  binding-protein-dependent transport systems inner membrane component  31.42 
 
 
264 aa  111  1.0000000000000001e-23  Methylobacterium populi BJ001  Bacteria  normal  0.0240883  normal  0.166534 
 
 
-
 
NC_006274  BCZK0354  ABC transporter, permease  27.42 
 
 
265 aa  110  2.0000000000000002e-23  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0381  ABC transporter permease  27.42 
 
 
257 aa  110  2.0000000000000002e-23  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_1393  binding-protein-dependent transport systems inner membrane component  28.85 
 
 
254 aa  110  2.0000000000000002e-23  Meiothermus ruber DSM 1279  Bacteria  normal  0.302994  normal  0.157809 
 
 
-
 
NC_011773  BCAH820_0424  putative ABC transporter, permease protein  27.42 
 
 
257 aa  110  2.0000000000000002e-23  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011725  BCB4264_A0446  putative ABC transporter, permease protein  26.77 
 
 
257 aa  111  2.0000000000000002e-23  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0450  binding-protein-dependent transport systems inner membrane component  31.44 
 
 
222 aa  110  2.0000000000000002e-23  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0491  ABC transporter, permease protein, putative  27.8 
 
 
257 aa  110  3e-23  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0367  ABC transporter permease  27.42 
 
 
265 aa  110  3e-23  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0357  ABC transporter, permease  27.42 
 
 
265 aa  110  3e-23  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0362  binding-protein-dependent transport systems inner membrane component  27.42 
 
 
255 aa  110  3e-23  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_009524  PsycPRwf_1445  binding-protein-dependent transport systems inner membrane component  29.44 
 
 
259 aa  110  3e-23  Psychrobacter sp. PRwf-1  Bacteria  normal  normal  0.318112 
 
 
-
 
NC_011772  BCG9842_B4878  putative ABC transporter, permease protein  27.42 
 
 
255 aa  110  3e-23  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_2084  binding-protein-dependent transport systems inner membrane component  35.71 
 
 
260 aa  110  4.0000000000000004e-23  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.566245  n/a   
 
 
-
 
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