More than 300 homologs were found in PanDaTox collection
for query gene Cthe_2116 on replicon NC_009012
Organism: Clostridium thermocellum ATCC 27405



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009012  Cthe_2116  binding-protein-dependent transport systems inner membrane component  100 
 
 
253 aa  501  1e-141  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0354  ABC transporter, permease  42.41 
 
 
265 aa  211  1e-53  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0367  ABC transporter permease  42.02 
 
 
265 aa  209  3e-53  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0357  ABC transporter, permease  42.02 
 
 
265 aa  209  3e-53  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0493  putative ABC transporter, permease protein  42.68 
 
 
257 aa  209  4e-53  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0381  ABC transporter permease  42.68 
 
 
257 aa  208  5e-53  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0424  putative ABC transporter, permease protein  42.68 
 
 
257 aa  208  5e-53  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_003909  BCE_0491  ABC transporter, permease protein, putative  42.68 
 
 
257 aa  208  6e-53  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4878  putative ABC transporter, permease protein  42.62 
 
 
255 aa  207  9e-53  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A0446  putative ABC transporter, permease protein  42.62 
 
 
257 aa  207  1e-52  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0362  binding-protein-dependent transport systems inner membrane component  42.26 
 
 
255 aa  206  2e-52  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_2064  binding-protein-dependent transport systems inner membrane component  40.8 
 
 
254 aa  201  8e-51  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.00112586  n/a   
 
 
-
 
NC_009674  Bcer98_0370  binding-protein-dependent transport systems inner membrane component  40.56 
 
 
256 aa  197  1.0000000000000001e-49  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_3205  binding-protein-dependent transport systems inner membrane component  39.11 
 
 
265 aa  197  2.0000000000000003e-49  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.000457845  n/a   
 
 
-
 
NC_009524  PsycPRwf_1445  binding-protein-dependent transport systems inner membrane component  38.33 
 
 
259 aa  195  5.000000000000001e-49  Psychrobacter sp. PRwf-1  Bacteria  normal  normal  0.318112 
 
 
-
 
NC_011830  Dhaf_0877  binding-protein-dependent transport systems inner membrane component  35.57 
 
 
260 aa  194  9e-49  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.00000000112184  n/a   
 
 
-
 
NC_013165  Shel_13670  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  37.93 
 
 
249 aa  191  8e-48  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_1221  binding-protein-dependent transport systems inner membrane component  39.66 
 
 
246 aa  191  1e-47  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010001  Cphy_1151  binding-protein-dependent transport systems inner membrane component  39.29 
 
 
254 aa  189  2.9999999999999997e-47  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0614  binding-protein-dependent transport systems inner membrane component  41.83 
 
 
250 aa  189  4e-47  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0784  putative ABC transporter, permease protein  43.35 
 
 
250 aa  187  1e-46  Bacillus cereus B4264  Bacteria  normal  0.605831  n/a   
 
 
-
 
NC_003909  BCE_0797  ABC transporter, permease protein, putative  42.92 
 
 
250 aa  186  4e-46  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0637  ABC transporter, permease  42.06 
 
 
250 aa  184  9e-46  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00537874  n/a   
 
 
-
 
NC_005945  BAS0693  ABC transporter permease  42.06 
 
 
250 aa  184  1.0000000000000001e-45  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0637  ABC transporter, permease  42.06 
 
 
250 aa  184  1.0000000000000001e-45  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0727  ABC transporter permease  42.06 
 
 
250 aa  184  1.0000000000000001e-45  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0363276  n/a   
 
 
-
 
NC_011773  BCAH820_0804  putative ABC transporter, permease protein  42.06 
 
 
250 aa  184  1.0000000000000001e-45  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.22036e-46 
 
 
-
 
NC_010184  BcerKBAB4_0643  binding-protein-dependent transport systems inner membrane component  41.63 
 
 
251 aa  183  3e-45  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_013515  Smon_0476  binding-protein-dependent transport systems inner membrane component  37.5 
 
 
249 aa  182  3e-45  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_011658  BCAH187_A0881  putative ABC transporter, permease protein  42.06 
 
 
251 aa  183  3e-45  Bacillus cereus AH187  Bacteria  hitchhiker  0.00328051  n/a   
 
 
-
 
NC_013203  Apar_0391  binding-protein-dependent transport systems inner membrane component  34.32 
 
 
257 aa  182  3e-45  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B4547  putative ABC transporter, permease protein  42.98 
 
 
251 aa  182  4.0000000000000006e-45  Bacillus cereus G9842  Bacteria  normal  0.113137  normal  0.441246 
 
 
-
 
NC_009486  Tpet_0435  binding-protein-dependent transport systems inner membrane component  37.93 
 
 
250 aa  182  6e-45  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0450  binding-protein-dependent transport systems inner membrane component  41.46 
 
 
222 aa  179  2.9999999999999997e-44  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_0669  binding-protein-dependent transport systems inner membrane component  38.53 
 
 
272 aa  177  1e-43  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0848141 
 
 
-
 
NC_011369  Rleg2_3645  binding-protein-dependent transport systems inner membrane component  38.56 
 
 
268 aa  175  6e-43  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_1668  binding-protein-dependent transport systems inner membrane component  36.13 
 
 
288 aa  173  1.9999999999999998e-42  Nakamurella multipartita DSM 44233  Bacteria  normal  0.173855  normal  0.365472 
 
 
-
 
NC_011831  Cagg_3116  binding-protein-dependent transport systems inner membrane component  38.77 
 
 
272 aa  172  3.9999999999999995e-42  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.025765  normal 
 
 
-
 
NC_013739  Cwoe_4254  binding-protein-dependent transport systems inner membrane component  36.29 
 
 
283 aa  172  3.9999999999999995e-42  Conexibacter woesei DSM 14684  Bacteria  normal  0.0441349  normal  0.902161 
 
 
-
 
NC_009767  Rcas_0666  binding-protein-dependent transport systems inner membrane component  39.21 
 
 
272 aa  172  5.999999999999999e-42  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3934  binding-protein-dependent transport systems inner membrane component  38.08 
 
 
278 aa  171  9e-42  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.421742  normal 
 
 
-
 
NC_010511  M446_0770  binding-protein-dependent transport systems inner membrane component  38.66 
 
 
273 aa  165  5.9999999999999996e-40  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_2985  binding-protein-dependent transport systems inner membrane component  36.97 
 
 
273 aa  164  1.0000000000000001e-39  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_3753  binding-protein-dependent transport systems inner membrane component  35.89 
 
 
268 aa  159  3e-38  Jannaschia sp. CCS1  Bacteria  normal  0.333865  normal 
 
 
-
 
NC_007778  RPB_3118  binding-protein dependent transport system inner membrane protein  32.92 
 
 
284 aa  159  5e-38  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_0620  binding-protein-dependent transport systems inner membrane component  37.39 
 
 
254 aa  158  6e-38  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.63161  normal 
 
 
-
 
NC_009921  Franean1_3131  binding-protein-dependent transport systems inner membrane component  35.32 
 
 
281 aa  156  3e-37  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_3099  binding-protein dependent transport system inner membrane protein  34.26 
 
 
261 aa  155  6e-37  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.578785 
 
 
-
 
NC_012792  Vapar_6052  binding-protein-dependent transport systems inner membrane component  36.77 
 
 
274 aa  155  6e-37  Variovorax paradoxus S110  Bacteria  normal  0.0454164  n/a   
 
 
-
 
NC_014151  Cfla_3017  binding-protein-dependent transport systems inner membrane component  34.05 
 
 
253 aa  154  1e-36  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.946292  normal 
 
 
-
 
NC_012791  Vapar_1862  binding-protein-dependent transport systems inner membrane component  33.92 
 
 
257 aa  153  2e-36  Variovorax paradoxus S110  Bacteria  normal  0.116723  n/a   
 
 
-
 
NC_011365  Gdia_3269  binding-protein-dependent transport systems inner membrane component  32.93 
 
 
253 aa  153  2e-36  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.283078  normal 
 
 
-
 
NC_013223  Dret_2296  binding-protein-dependent transport systems inner membrane component  34.14 
 
 
250 aa  153  2.9999999999999998e-36  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_009784  VIBHAR_06840  ABC-type nitrate/sulfonate/bicarbonate transport system permease component  30.68 
 
 
266 aa  149  3e-35  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013457  VEA_000865  hydroxymethylpyrimidine ABC transporter transmembrane component  31.08 
 
 
266 aa  149  5e-35  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_1643  binding-protein-dependent transport systems inner membrane component  34.76 
 
 
259 aa  149  6e-35  Conexibacter woesei DSM 14684  Bacteria  normal  0.805205  normal  0.60128 
 
 
-
 
NC_013525  Tter_0403  binding-protein-dependent transport systems inner membrane component  31.38 
 
 
271 aa  147  2.0000000000000003e-34  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008148  Rxyl_2084  binding-protein-dependent transport systems inner membrane component  34.84 
 
 
260 aa  147  2.0000000000000003e-34  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.566245  n/a   
 
 
-
 
NC_009485  BBta_7629  putative ABC transporter permease protein  32.76 
 
 
282 aa  146  3e-34  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.262472  normal  0.441686 
 
 
-
 
NC_007973  Rmet_0394  binding-protein-dependent transport systems inner membrane component  31.3 
 
 
259 aa  146  3e-34  Cupriavidus metallidurans CH34  Bacteria  normal  hitchhiker  0.00657833 
 
 
-
 
NC_013739  Cwoe_3810  binding-protein-dependent transport systems inner membrane component  32.76 
 
 
258 aa  146  4.0000000000000006e-34  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.42897 
 
 
-
 
NC_007509  Bcep18194_C7650  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  35.37 
 
 
247 aa  145  5e-34  Burkholderia sp. 383  Bacteria  normal  0.621765  normal 
 
 
-
 
NC_009485  BBta_1169  putative ABC transporter permease protein  29.92 
 
 
279 aa  145  7.0000000000000006e-34  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009669  Oant_4580  binding-protein-dependent transport systems inner membrane component  34.65 
 
 
257 aa  145  9e-34  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_2376  ABC transporter substrate binding inner membrane protein  31.22 
 
 
265 aa  144  1e-33  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_3506  binding-protein-dependent transport systems inner membrane component  31.67 
 
 
282 aa  144  1e-33  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0528385  normal  0.0939424 
 
 
-
 
NC_013173  Dbac_0926  binding-protein-dependent transport systems inner membrane component  33.79 
 
 
249 aa  143  2e-33  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.04587  n/a   
 
 
-
 
NC_010681  Bphyt_1488  binding-protein-dependent transport systems inner membrane component  35.62 
 
 
247 aa  142  4e-33  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_4522  binding-protein-dependent transport systems inner membrane component  34.08 
 
 
329 aa  142  4e-33  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_3606  binding-protein-dependent transport systems inner membrane component  30.04 
 
 
257 aa  142  6e-33  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.071611 
 
 
-
 
NC_008686  Pden_0033  binding-protein-dependent transport systems inner membrane component  30.17 
 
 
243 aa  142  7e-33  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_2703  binding-protein-dependent transport systems inner membrane component  32.62 
 
 
263 aa  141  9.999999999999999e-33  Marinomonas sp. MWYL1  Bacteria  normal  0.88688  normal 
 
 
-
 
NC_007778  RPB_3093  binding-protein dependent transport system inner membrane protein  30.25 
 
 
259 aa  140  1.9999999999999998e-32  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.942666 
 
 
-
 
NC_007963  Csal_1933  binding-protein-dependent transport systems inner membrane component  27.12 
 
 
255 aa  140  1.9999999999999998e-32  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.323499  n/a   
 
 
-
 
NC_013946  Mrub_1393  binding-protein-dependent transport systems inner membrane component  28.99 
 
 
254 aa  140  1.9999999999999998e-32  Meiothermus ruber DSM 1279  Bacteria  normal  0.302994  normal  0.157809 
 
 
-
 
NC_010002  Daci_1140  binding-protein-dependent transport systems inner membrane component  29.61 
 
 
255 aa  139  3.9999999999999997e-32  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_3035  binding-protein-dependent transport systems inner membrane component  30.83 
 
 
256 aa  139  3.9999999999999997e-32  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008043  TM1040_3658  binding-protein-dependent transport systems inner membrane component  28.21 
 
 
245 aa  139  4.999999999999999e-32  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR0211  ABC transporter, permease protein  28.57 
 
 
258 aa  137  1e-31  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_014148  Plim_2867  binding-protein-dependent transport systems inner membrane component  34.35 
 
 
277 aa  137  2e-31  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0278  binding-protein-dependent transport systems inner membrane component  28.57 
 
 
258 aa  137  2e-31  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_2127  binding-protein-dependent transport systems inner membrane component  29.31 
 
 
255 aa  137  2e-31  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.427162 
 
 
-
 
NC_009505  BOV_0202  ABC transporter, permease protein  28.57 
 
 
258 aa  136  3.0000000000000003e-31  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_0891  binding-protein-dependent transport systems inner membrane component  33.05 
 
 
268 aa  136  3.0000000000000003e-31  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.223421 
 
 
-
 
NC_010524  Lcho_1095  binding-protein-dependent transport systems inner membrane component  28.87 
 
 
255 aa  135  4e-31  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_012791  Vapar_3961  binding-protein-dependent transport systems inner membrane component  28.27 
 
 
256 aa  136  4e-31  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_3181  binding-protein-dependent transport systems inner membrane component  35.04 
 
 
277 aa  135  7.000000000000001e-31  Burkholderia phymatum STM815  Bacteria  normal  0.0283642  normal 
 
 
-
 
NC_009720  Xaut_3758  binding-protein-dependent transport systems inner membrane component  29.87 
 
 
256 aa  134  9.999999999999999e-31  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_1091  binding-protein-dependent transport systems inner membrane component  28.33 
 
 
258 aa  134  9.999999999999999e-31  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0347556  normal 
 
 
-
 
NC_013093  Amir_4887  binding-protein-dependent transport systems inner membrane component  29.79 
 
 
267 aa  133  1.9999999999999998e-30  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013721  HMPREF0424_0654  ABC transporter, permease protein  31.44 
 
 
263 aa  133  1.9999999999999998e-30  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_012791  Vapar_0620  binding-protein-dependent transport systems inner membrane component  31.73 
 
 
258 aa  134  1.9999999999999998e-30  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_3124  binding-protein-dependent transport systems inner membrane component  32.11 
 
 
255 aa  133  1.9999999999999998e-30  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_011988  Avi_5406  ABC transporter membrane spanning protein  30.04 
 
 
251 aa  132  3.9999999999999996e-30  Agrobacterium vitis S4  Bacteria  normal  0.408693  n/a   
 
 
-
 
NC_012852  Rleg_6281  binding-protein-dependent transport systems inner membrane component  30.67 
 
 
256 aa  132  3.9999999999999996e-30  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.783663  normal 
 
 
-
 
NC_011313  VSAL_II0488  putative binding protein-dependent transport system, membrane component  32.63 
 
 
272 aa  130  1.0000000000000001e-29  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.970837  n/a   
 
 
-
 
NC_009952  Dshi_0906  binding-protein-dependent transport systems inner membrane component  30.43 
 
 
244 aa  129  6e-29  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.53091  normal 
 
 
-
 
NC_012669  Bcav_0452  binding-protein-dependent transport systems inner membrane component  26 
 
 
252 aa  127  1.0000000000000001e-28  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.0467336 
 
 
-
 
NC_008254  Meso_2962  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
280 aa  127  1.0000000000000001e-28  Chelativorans sp. BNC1  Bacteria  normal  0.0794658  n/a   
 
 
-
 
NC_014210  Ndas_4504  binding-protein-dependent transport systems inner membrane component  27.5 
 
 
281 aa  127  1.0000000000000001e-28  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
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