More than 300 homologs were found in PanDaTox collection
for query gene TM1040_3658 on replicon NC_008043
Organism: Ruegeria sp. TM1040



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008043  TM1040_3658  binding-protein-dependent transport systems inner membrane component  100 
 
 
245 aa  472  1e-132  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_0906  binding-protein-dependent transport systems inner membrane component  70.82 
 
 
244 aa  294  7e-79  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.53091  normal 
 
 
-
 
NC_004310  BR0211  ABC transporter, permease protein  58.15 
 
 
258 aa  257  1e-67  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0278  binding-protein-dependent transport systems inner membrane component  56.22 
 
 
258 aa  255  4e-67  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_0202  ABC transporter, permease protein  57.71 
 
 
258 aa  253  2.0000000000000002e-66  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_0033  binding-protein-dependent transport systems inner membrane component  56.12 
 
 
243 aa  245  4.9999999999999997e-64  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_2376  ABC transporter substrate binding inner membrane protein  52.91 
 
 
265 aa  228  7e-59  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_1933  binding-protein-dependent transport systems inner membrane component  53.39 
 
 
255 aa  224  1e-57  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.323499  n/a   
 
 
-
 
NC_009784  VIBHAR_06840  ABC-type nitrate/sulfonate/bicarbonate transport system permease component  50 
 
 
266 aa  223  2e-57  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013457  VEA_000865  hydroxymethylpyrimidine ABC transporter transmembrane component  51.12 
 
 
266 aa  221  9.999999999999999e-57  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_3269  binding-protein-dependent transport systems inner membrane component  52.04 
 
 
253 aa  216  2e-55  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.283078  normal 
 
 
-
 
NC_009428  Rsph17025_0588  binding-protein-dependent transport systems inner membrane component  57.34 
 
 
238 aa  214  9.999999999999999e-55  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.98825  normal 
 
 
-
 
NC_009832  Spro_3124  binding-protein-dependent transport systems inner membrane component  52.13 
 
 
255 aa  213  1.9999999999999998e-54  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_2297  binding-protein-dependent transport systems inner membrane component  54.91 
 
 
238 aa  206  2e-52  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0792355  normal  0.132671 
 
 
-
 
NC_007493  RSP_0644  ABC transporter, inner membrane subunit  54.46 
 
 
238 aa  204  9e-52  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_011313  VSAL_II0488  putative binding protein-dependent transport system, membrane component  51.28 
 
 
272 aa  201  7e-51  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.970837  n/a   
 
 
-
 
NC_013173  Dbac_0926  binding-protein-dependent transport systems inner membrane component  50.46 
 
 
249 aa  200  1.9999999999999998e-50  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.04587  n/a   
 
 
-
 
NC_007643  Rru_A1643  binding-protein dependent transport system inner membrane protein  54.95 
 
 
261 aa  196  2.0000000000000003e-49  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0353041  n/a   
 
 
-
 
NC_012792  Vapar_6052  binding-protein-dependent transport systems inner membrane component  38.86 
 
 
274 aa  158  9e-38  Variovorax paradoxus S110  Bacteria  normal  0.0454164  n/a   
 
 
-
 
NC_009524  PsycPRwf_1445  binding-protein-dependent transport systems inner membrane component  31.9 
 
 
259 aa  155  7e-37  Psychrobacter sp. PRwf-1  Bacteria  normal  normal  0.318112 
 
 
-
 
NC_013517  Sterm_2064  binding-protein-dependent transport systems inner membrane component  34.91 
 
 
254 aa  148  7e-35  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.00112586  n/a   
 
 
-
 
NC_013739  Cwoe_4254  binding-protein-dependent transport systems inner membrane component  38.39 
 
 
283 aa  147  1.0000000000000001e-34  Conexibacter woesei DSM 14684  Bacteria  normal  0.0441349  normal  0.902161 
 
 
-
 
NC_013525  Tter_1221  binding-protein-dependent transport systems inner membrane component  37.55 
 
 
246 aa  144  1e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009253  Dred_3205  binding-protein-dependent transport systems inner membrane component  33.93 
 
 
265 aa  143  3e-33  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.000457845  n/a   
 
 
-
 
NC_013203  Apar_0391  binding-protein-dependent transport systems inner membrane component  33.06 
 
 
257 aa  142  4e-33  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_2296  binding-protein-dependent transport systems inner membrane component  38.89 
 
 
250 aa  142  6e-33  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_1488  binding-protein-dependent transport systems inner membrane component  35.71 
 
 
247 aa  142  7e-33  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007509  Bcep18194_C7650  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  36.65 
 
 
247 aa  140  1.9999999999999998e-32  Burkholderia sp. 383  Bacteria  normal  0.621765  normal 
 
 
-
 
NC_013165  Shel_13670  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  32.47 
 
 
249 aa  139  3e-32  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_0620  binding-protein-dependent transport systems inner membrane component  41.21 
 
 
258 aa  139  3e-32  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0446  putative ABC transporter, permease protein  32.43 
 
 
257 aa  138  6e-32  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4878  putative ABC transporter, permease protein  32.43 
 
 
255 aa  138  7.999999999999999e-32  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_005945  BAS0367  ABC transporter permease  31.98 
 
 
265 aa  137  1e-31  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0357  ABC transporter, permease  31.98 
 
 
265 aa  137  1e-31  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0354  ABC transporter, permease  31.53 
 
 
265 aa  137  1e-31  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0424  putative ABC transporter, permease protein  31.98 
 
 
257 aa  137  1e-31  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_007530  GBAA_0381  ABC transporter permease  31.98 
 
 
257 aa  137  1e-31  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0491  ABC transporter, permease protein, putative  31.98 
 
 
257 aa  137  2e-31  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0362  binding-protein-dependent transport systems inner membrane component  32.43 
 
 
255 aa  137  2e-31  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0493  putative ABC transporter, permease protein  31.53 
 
 
257 aa  136  3.0000000000000003e-31  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_7629  putative ABC transporter permease protein  34.22 
 
 
282 aa  135  6.0000000000000005e-31  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.262472  normal  0.441686 
 
 
-
 
NC_013515  Smon_0476  binding-protein-dependent transport systems inner membrane component  30.77 
 
 
249 aa  135  8e-31  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_009485  BBta_1169  putative ABC transporter permease protein  36.16 
 
 
279 aa  134  9.999999999999999e-31  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_0620  binding-protein-dependent transport systems inner membrane component  34.09 
 
 
254 aa  134  9.999999999999999e-31  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.63161  normal 
 
 
-
 
NC_012791  Vapar_1862  binding-protein-dependent transport systems inner membrane component  36.16 
 
 
257 aa  134  1.9999999999999998e-30  Variovorax paradoxus S110  Bacteria  normal  0.116723  n/a   
 
 
-
 
NC_013739  Cwoe_3810  binding-protein-dependent transport systems inner membrane component  32.47 
 
 
258 aa  132  3.9999999999999996e-30  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.42897 
 
 
-
 
NC_008148  Rxyl_2084  binding-protein-dependent transport systems inner membrane component  42.45 
 
 
260 aa  132  3.9999999999999996e-30  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.566245  n/a   
 
 
-
 
NC_013525  Tter_0403  binding-protein-dependent transport systems inner membrane component  35.78 
 
 
271 aa  132  6e-30  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009012  Cthe_2116  binding-protein-dependent transport systems inner membrane component  28.21 
 
 
253 aa  132  6e-30  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_0877  binding-protein-dependent transport systems inner membrane component  33.78 
 
 
260 aa  131  7.999999999999999e-30  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.00000000112184  n/a   
 
 
-
 
NC_009486  Tpet_0435  binding-protein-dependent transport systems inner membrane component  32.67 
 
 
250 aa  131  1.0000000000000001e-29  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3118  binding-protein dependent transport system inner membrane protein  31.8 
 
 
284 aa  131  1.0000000000000001e-29  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_010483  TRQ2_0450  binding-protein-dependent transport systems inner membrane component  32.67 
 
 
222 aa  131  1.0000000000000001e-29  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0370  binding-protein-dependent transport systems inner membrane component  31.08 
 
 
256 aa  131  1.0000000000000001e-29  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_2985  binding-protein-dependent transport systems inner membrane component  34.89 
 
 
273 aa  126  3e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_3131  binding-protein-dependent transport systems inner membrane component  33.77 
 
 
281 aa  125  9e-28  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_1151  binding-protein-dependent transport systems inner membrane component  32.19 
 
 
254 aa  122  4e-27  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2763  binding-protein-dependent transport systems inner membrane component  34.29 
 
 
275 aa  121  9.999999999999999e-27  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_3753  binding-protein-dependent transport systems inner membrane component  34.42 
 
 
268 aa  120  3e-26  Jannaschia sp. CCS1  Bacteria  normal  0.333865  normal 
 
 
-
 
NC_009674  Bcer98_0614  binding-protein-dependent transport systems inner membrane component  33.8 
 
 
250 aa  120  3e-26  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013743  Htur_0669  binding-protein-dependent transport systems inner membrane component  35.75 
 
 
258 aa  119  3.9999999999999996e-26  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_008786  Veis_3506  binding-protein-dependent transport systems inner membrane component  34.21 
 
 
282 aa  118  9e-26  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0528385  normal  0.0939424 
 
 
-
 
NC_005945  BAS0693  ABC transporter permease  34.72 
 
 
250 aa  117  9.999999999999999e-26  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0637  ABC transporter, permease  34.72 
 
 
250 aa  117  9.999999999999999e-26  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00537874  n/a   
 
 
-
 
NC_006274  BCZK0637  ABC transporter, permease  34.72 
 
 
250 aa  118  9.999999999999999e-26  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0727  ABC transporter permease  34.72 
 
 
250 aa  117  9.999999999999999e-26  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0363276  n/a   
 
 
-
 
NC_013743  Htur_0667  binding-protein-dependent transport systems inner membrane component  35.75 
 
 
299 aa  117  9.999999999999999e-26  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_011773  BCAH820_0804  putative ABC transporter, permease protein  34.72 
 
 
250 aa  117  9.999999999999999e-26  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.22036e-46 
 
 
-
 
NC_011004  Rpal_2254  binding-protein-dependent transport systems inner membrane component  35.86 
 
 
264 aa  117  1.9999999999999998e-25  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.440017  n/a   
 
 
-
 
NC_007778  RPB_3099  binding-protein dependent transport system inner membrane protein  32.59 
 
 
261 aa  116  3e-25  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.578785 
 
 
-
 
NC_009767  Rcas_2389  binding-protein-dependent transport systems inner membrane component  34.78 
 
 
275 aa  116  3e-25  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_0643  binding-protein-dependent transport systems inner membrane component  34.72 
 
 
251 aa  116  3e-25  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0770  binding-protein-dependent transport systems inner membrane component  32.14 
 
 
273 aa  116  3e-25  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B4547  putative ABC transporter, permease protein  33.8 
 
 
251 aa  115  5e-25  Bacillus cereus G9842  Bacteria  normal  0.113137  normal  0.441246 
 
 
-
 
NC_003909  BCE_0797  ABC transporter, permease protein, putative  32.5 
 
 
250 aa  115  6.9999999999999995e-25  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0784  putative ABC transporter, permease protein  33.33 
 
 
250 aa  115  6.9999999999999995e-25  Bacillus cereus B4264  Bacteria  normal  0.605831  n/a   
 
 
-
 
NC_009669  Oant_4580  binding-protein-dependent transport systems inner membrane component  34.45 
 
 
257 aa  115  6.9999999999999995e-25  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0881  putative ABC transporter, permease protein  32.5 
 
 
251 aa  115  7.999999999999999e-25  Bacillus cereus AH187  Bacteria  hitchhiker  0.00328051  n/a   
 
 
-
 
NC_013093  Amir_4887  binding-protein-dependent transport systems inner membrane component  35.41 
 
 
267 aa  114  2.0000000000000002e-24  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_3036  binding-protein-dependent transport systems inner membrane component  35.29 
 
 
266 aa  114  2.0000000000000002e-24  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_3934  binding-protein-dependent transport systems inner membrane component  32.77 
 
 
278 aa  114  2.0000000000000002e-24  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.421742  normal 
 
 
-
 
NC_008148  Rxyl_3035  binding-protein-dependent transport systems inner membrane component  31.42 
 
 
256 aa  113  3e-24  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3093  binding-protein dependent transport system inner membrane protein  32.88 
 
 
259 aa  112  5e-24  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.942666 
 
 
-
 
NC_011369  Rleg2_3645  binding-protein-dependent transport systems inner membrane component  33.76 
 
 
268 aa  112  5e-24  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_1044  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
263 aa  112  5e-24  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_1136  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
263 aa  112  6e-24  Ralstonia pickettii 12D  Bacteria  normal  0.629035  normal  0.968824 
 
 
-
 
NC_009654  Mmwyl1_2703  binding-protein-dependent transport systems inner membrane component  29.91 
 
 
263 aa  112  7.000000000000001e-24  Marinomonas sp. MWYL1  Bacteria  normal  0.88688  normal 
 
 
-
 
NC_013739  Cwoe_1643  binding-protein-dependent transport systems inner membrane component  36.77 
 
 
259 aa  112  8.000000000000001e-24  Conexibacter woesei DSM 14684  Bacteria  normal  0.805205  normal  0.60128 
 
 
-
 
NC_013721  HMPREF0424_0654  ABC transporter, permease protein  28.03 
 
 
263 aa  111  9e-24  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_014148  Plim_2867  binding-protein-dependent transport systems inner membrane component  30.51 
 
 
277 aa  111  1.0000000000000001e-23  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_2762  binding-protein-dependent transport systems inner membrane component  34.91 
 
 
250 aa  111  1.0000000000000001e-23  Conexibacter woesei DSM 14684  Bacteria  normal  0.0247808  normal  0.0244453 
 
 
-
 
NC_003295  RSc1200  transmembrane permease ABC transporter protein  33.33 
 
 
263 aa  109  4.0000000000000004e-23  Ralstonia solanacearum GMI1000  Bacteria  normal  0.441856  normal  0.826922 
 
 
-
 
NC_011894  Mnod_3419  binding-protein-dependent transport systems inner membrane component  32.76 
 
 
258 aa  109  4.0000000000000004e-23  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.121812  n/a   
 
 
-
 
NC_013235  Namu_1668  binding-protein-dependent transport systems inner membrane component  31.84 
 
 
288 aa  109  5e-23  Nakamurella multipartita DSM 44233  Bacteria  normal  0.173855  normal  0.365472 
 
 
-
 
NC_011831  Cagg_1308  binding-protein-dependent transport systems inner membrane component  37.77 
 
 
254 aa  108  6e-23  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.0000169849 
 
 
-
 
NC_009921  Franean1_4522  binding-protein-dependent transport systems inner membrane component  34 
 
 
329 aa  108  6e-23  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_2621  binding-protein-dependent transport systems inner membrane component  31.45 
 
 
281 aa  108  1e-22  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.00000218671  n/a   
 
 
-
 
NC_009953  Sare_4268  binding-protein-dependent transport systems inner membrane component  32.62 
 
 
282 aa  107  2e-22  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0113678 
 
 
-
 
NC_011831  Cagg_2734  binding-protein-dependent transport systems inner membrane component  35.29 
 
 
267 aa  106  3e-22  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.549296  normal 
 
 
-
 
NC_012852  Rleg_6281  binding-protein-dependent transport systems inner membrane component  27.63 
 
 
256 aa  106  4e-22  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.783663  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>