More than 300 homologs were found in PanDaTox collection
for query gene Pden_0033 on replicon NC_008686
Organism: Paracoccus denitrificans PD1222



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008686  Pden_0033  binding-protein-dependent transport systems inner membrane component  100 
 
 
243 aa  462  1e-129  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_008043  TM1040_3658  binding-protein-dependent transport systems inner membrane component  56.12 
 
 
245 aa  245  4e-64  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_0906  binding-protein-dependent transport systems inner membrane component  58.6 
 
 
244 aa  229  3e-59  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.53091  normal 
 
 
-
 
NC_011365  Gdia_3269  binding-protein-dependent transport systems inner membrane component  53.95 
 
 
253 aa  224  7e-58  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.283078  normal 
 
 
-
 
NC_009428  Rsph17025_0588  binding-protein-dependent transport systems inner membrane component  55.7 
 
 
238 aa  222  4e-57  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.98825  normal 
 
 
-
 
NC_009667  Oant_0278  binding-protein-dependent transport systems inner membrane component  51.98 
 
 
258 aa  220  1.9999999999999999e-56  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR0211  ABC transporter, permease protein  51.08 
 
 
258 aa  219  3e-56  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_0202  ABC transporter, permease protein  50.65 
 
 
258 aa  217  2e-55  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_06840  ABC-type nitrate/sulfonate/bicarbonate transport system permease component  47.83 
 
 
266 aa  213  2.9999999999999995e-54  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013457  VEA_000865  hydroxymethylpyrimidine ABC transporter transmembrane component  47.83 
 
 
266 aa  212  4.9999999999999996e-54  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_1933  binding-protein-dependent transport systems inner membrane component  51.07 
 
 
255 aa  208  5e-53  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.323499  n/a   
 
 
-
 
NC_007493  RSP_0644  ABC transporter, inner membrane subunit  56.33 
 
 
238 aa  208  7e-53  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2297  binding-protein-dependent transport systems inner membrane component  56.33 
 
 
238 aa  208  8e-53  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0792355  normal  0.132671 
 
 
-
 
NC_009832  Spro_3124  binding-protein-dependent transport systems inner membrane component  51.85 
 
 
255 aa  207  1e-52  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_2376  ABC transporter substrate binding inner membrane protein  45.73 
 
 
265 aa  206  4e-52  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_0926  binding-protein-dependent transport systems inner membrane component  51.38 
 
 
249 aa  201  6e-51  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.04587  n/a   
 
 
-
 
NC_011313  VSAL_II0488  putative binding protein-dependent transport system, membrane component  48.61 
 
 
272 aa  189  5e-47  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.970837  n/a   
 
 
-
 
NC_007643  Rru_A1643  binding-protein dependent transport system inner membrane protein  53.55 
 
 
261 aa  184  1.0000000000000001e-45  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0353041  n/a   
 
 
-
 
NC_009524  PsycPRwf_1445  binding-protein-dependent transport systems inner membrane component  35.9 
 
 
259 aa  173  1.9999999999999998e-42  Psychrobacter sp. PRwf-1  Bacteria  normal  normal  0.318112 
 
 
-
 
NC_013525  Tter_1221  binding-protein-dependent transport systems inner membrane component  39.63 
 
 
246 aa  169  5e-41  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011830  Dhaf_0877  binding-protein-dependent transport systems inner membrane component  38.16 
 
 
260 aa  166  2.9999999999999998e-40  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.00000000112184  n/a   
 
 
-
 
NC_013165  Shel_13670  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  39.45 
 
 
249 aa  165  8e-40  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_013203  Apar_0391  binding-protein-dependent transport systems inner membrane component  37.78 
 
 
257 aa  161  7e-39  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_013517  Sterm_2064  binding-protein-dependent transport systems inner membrane component  34.72 
 
 
254 aa  155  6e-37  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.00112586  n/a   
 
 
-
 
NC_009253  Dred_3205  binding-protein-dependent transport systems inner membrane component  36.74 
 
 
265 aa  155  7e-37  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.000457845  n/a   
 
 
-
 
NC_013235  Namu_1668  binding-protein-dependent transport systems inner membrane component  39.82 
 
 
288 aa  153  2e-36  Nakamurella multipartita DSM 44233  Bacteria  normal  0.173855  normal  0.365472 
 
 
-
 
NC_013739  Cwoe_4254  binding-protein-dependent transport systems inner membrane component  36.69 
 
 
283 aa  153  2.9999999999999998e-36  Conexibacter woesei DSM 14684  Bacteria  normal  0.0441349  normal  0.902161 
 
 
-
 
NC_012792  Vapar_6052  binding-protein-dependent transport systems inner membrane component  39.21 
 
 
274 aa  152  2.9999999999999998e-36  Variovorax paradoxus S110  Bacteria  normal  0.0454164  n/a   
 
 
-
 
NC_013515  Smon_0476  binding-protein-dependent transport systems inner membrane component  33.64 
 
 
249 aa  147  1.0000000000000001e-34  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_013223  Dret_2296  binding-protein-dependent transport systems inner membrane component  41.1 
 
 
250 aa  144  2e-33  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_009486  Tpet_0435  binding-protein-dependent transport systems inner membrane component  36.59 
 
 
250 aa  142  4e-33  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0450  binding-protein-dependent transport systems inner membrane component  36.59 
 
 
222 aa  142  4e-33  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1151  binding-protein-dependent transport systems inner membrane component  34.2 
 
 
254 aa  142  5e-33  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0354  ABC transporter, permease  32.61 
 
 
265 aa  141  9e-33  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4878  putative ABC transporter, permease protein  32.38 
 
 
255 aa  140  9.999999999999999e-33  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_0362  binding-protein-dependent transport systems inner membrane component  32.61 
 
 
255 aa  140  1.9999999999999998e-32  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0491  ABC transporter, permease protein, putative  32.17 
 
 
257 aa  139  3e-32  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0367  ABC transporter permease  32.17 
 
 
265 aa  139  3e-32  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0357  ABC transporter, permease  32.17 
 
 
265 aa  139  3e-32  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0381  ABC transporter permease  32.17 
 
 
257 aa  139  3e-32  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0370  binding-protein-dependent transport systems inner membrane component  32.91 
 
 
256 aa  139  3e-32  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0424  putative ABC transporter, permease protein  32.17 
 
 
257 aa  139  3e-32  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_009012  Cthe_2116  binding-protein-dependent transport systems inner membrane component  30.17 
 
 
253 aa  139  4.999999999999999e-32  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2763  binding-protein-dependent transport systems inner membrane component  36.28 
 
 
275 aa  138  7e-32  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_3118  binding-protein dependent transport system inner membrane protein  37.61 
 
 
284 aa  138  7e-32  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011658  BCAH187_A0493  putative ABC transporter, permease protein  31.74 
 
 
257 aa  138  7e-32  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_3934  binding-protein-dependent transport systems inner membrane component  38.05 
 
 
278 aa  138  7e-32  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.421742  normal 
 
 
-
 
NC_011725  BCB4264_A0446  putative ABC transporter, permease protein  31.97 
 
 
257 aa  137  1e-31  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_2084  binding-protein-dependent transport systems inner membrane component  44.95 
 
 
260 aa  136  3.0000000000000003e-31  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.566245  n/a   
 
 
-
 
NC_011369  Rleg2_3645  binding-protein-dependent transport systems inner membrane component  38.27 
 
 
268 aa  136  3.0000000000000003e-31  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_3131  binding-protein-dependent transport systems inner membrane component  36.13 
 
 
281 aa  135  4e-31  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_7629  putative ABC transporter permease protein  35.4 
 
 
282 aa  135  5e-31  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.262472  normal  0.441686 
 
 
-
 
NC_014151  Cfla_3017  binding-protein-dependent transport systems inner membrane component  39.62 
 
 
253 aa  134  9.999999999999999e-31  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.946292  normal 
 
 
-
 
NC_012852  Rleg_6281  binding-protein-dependent transport systems inner membrane component  35.34 
 
 
256 aa  134  1.9999999999999998e-30  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.783663  normal 
 
 
-
 
NC_009523  RoseRS_0669  binding-protein-dependent transport systems inner membrane component  39.21 
 
 
272 aa  132  6.999999999999999e-30  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0848141 
 
 
-
 
NC_012791  Vapar_1862  binding-protein-dependent transport systems inner membrane component  35.78 
 
 
257 aa  131  7.999999999999999e-30  Variovorax paradoxus S110  Bacteria  normal  0.116723  n/a   
 
 
-
 
NC_007509  Bcep18194_C7650  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  38.81 
 
 
247 aa  131  1.0000000000000001e-29  Burkholderia sp. 383  Bacteria  normal  0.621765  normal 
 
 
-
 
NC_013525  Tter_0403  binding-protein-dependent transport systems inner membrane component  34.18 
 
 
271 aa  130  1.0000000000000001e-29  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008786  Veis_0620  binding-protein-dependent transport systems inner membrane component  35.68 
 
 
254 aa  130  2.0000000000000002e-29  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.63161  normal 
 
 
-
 
NC_008786  Veis_3506  binding-protein-dependent transport systems inner membrane component  34.91 
 
 
282 aa  130  2.0000000000000002e-29  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0528385  normal  0.0939424 
 
 
-
 
NC_011894  Mnod_2985  binding-protein-dependent transport systems inner membrane component  34.33 
 
 
273 aa  130  2.0000000000000002e-29  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_3116  binding-protein-dependent transport systems inner membrane component  39.05 
 
 
272 aa  129  3e-29  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.025765  normal 
 
 
-
 
NC_011831  Cagg_1308  binding-protein-dependent transport systems inner membrane component  42.33 
 
 
254 aa  129  3e-29  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.0000169849 
 
 
-
 
NC_009767  Rcas_2389  binding-protein-dependent transport systems inner membrane component  35.1 
 
 
275 aa  129  4.0000000000000003e-29  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0770  binding-protein-dependent transport systems inner membrane component  33.19 
 
 
273 aa  129  4.0000000000000003e-29  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_0614  binding-protein-dependent transport systems inner membrane component  36.41 
 
 
250 aa  129  4.0000000000000003e-29  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_1488  binding-protein-dependent transport systems inner membrane component  37.34 
 
 
247 aa  129  6e-29  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_0666  binding-protein-dependent transport systems inner membrane component  39.52 
 
 
272 aa  125  4.0000000000000003e-28  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B4547  putative ABC transporter, permease protein  35.48 
 
 
251 aa  125  7e-28  Bacillus cereus G9842  Bacteria  normal  0.113137  normal  0.441246 
 
 
-
 
NC_011725  BCB4264_A0784  putative ABC transporter, permease protein  35.94 
 
 
250 aa  124  9e-28  Bacillus cereus B4264  Bacteria  normal  0.605831  n/a   
 
 
-
 
NC_012791  Vapar_0620  binding-protein-dependent transport systems inner membrane component  38.89 
 
 
258 aa  124  9e-28  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0797  ABC transporter, permease protein, putative  35.02 
 
 
250 aa  124  1e-27  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0881  putative ABC transporter, permease protein  35.02 
 
 
251 aa  124  2e-27  Bacillus cereus AH187  Bacteria  hitchhiker  0.00328051  n/a   
 
 
-
 
NC_011773  BCAH820_0804  putative ABC transporter, permease protein  34.4 
 
 
250 aa  123  2e-27  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.22036e-46 
 
 
-
 
NC_005945  BAS0693  ABC transporter permease  34.56 
 
 
250 aa  123  3e-27  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0637  ABC transporter, permease  34.56 
 
 
250 aa  123  3e-27  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00537874  n/a   
 
 
-
 
NC_006274  BCZK0637  ABC transporter, permease  34.56 
 
 
250 aa  123  3e-27  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0643  binding-protein-dependent transport systems inner membrane component  35.48 
 
 
251 aa  123  3e-27  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0727  ABC transporter permease  34.56 
 
 
250 aa  123  3e-27  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0363276  n/a   
 
 
-
 
NC_003295  RSc1200  transmembrane permease ABC transporter protein  33.33 
 
 
263 aa  122  4e-27  Ralstonia solanacearum GMI1000  Bacteria  normal  0.441856  normal  0.826922 
 
 
-
 
NC_008254  Meso_0814  binding-protein-dependent transport systems inner membrane component  34.2 
 
 
270 aa  122  4e-27  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_1044  binding-protein-dependent transport systems inner membrane component  32.87 
 
 
263 aa  120  3e-26  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_1136  binding-protein-dependent transport systems inner membrane component  32.87 
 
 
263 aa  119  3e-26  Ralstonia pickettii 12D  Bacteria  normal  0.629035  normal  0.968824 
 
 
-
 
NC_007778  RPB_3099  binding-protein dependent transport system inner membrane protein  34.5 
 
 
261 aa  119  4.9999999999999996e-26  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.578785 
 
 
-
 
NC_013739  Cwoe_1643  binding-protein-dependent transport systems inner membrane component  38.3 
 
 
259 aa  119  6e-26  Conexibacter woesei DSM 14684  Bacteria  normal  0.805205  normal  0.60128 
 
 
-
 
NC_007951  Bxe_A2355  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  32.09 
 
 
274 aa  118  7e-26  Burkholderia xenovorans LB400  Bacteria  normal  0.214574  normal  0.0382396 
 
 
-
 
NC_009669  Oant_4580  binding-protein-dependent transport systems inner membrane component  35.16 
 
 
257 aa  118  7.999999999999999e-26  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_4527  binding-protein-dependent transport systems inner membrane component  39.73 
 
 
253 aa  118  9e-26  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_3753  binding-protein-dependent transport systems inner membrane component  32.9 
 
 
268 aa  117  9.999999999999999e-26  Jannaschia sp. CCS1  Bacteria  normal  0.333865  normal 
 
 
-
 
NC_011004  Rpal_2254  binding-protein-dependent transport systems inner membrane component  35.02 
 
 
264 aa  117  9.999999999999999e-26  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.440017  n/a   
 
 
-
 
NC_013946  Mrub_1393  binding-protein-dependent transport systems inner membrane component  33.04 
 
 
254 aa  117  1.9999999999999998e-25  Meiothermus ruber DSM 1279  Bacteria  normal  0.302994  normal  0.157809 
 
 
-
 
NC_011894  Mnod_3419  binding-protein-dependent transport systems inner membrane component  32.89 
 
 
258 aa  117  1.9999999999999998e-25  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.121812  n/a   
 
 
-
 
NC_009654  Mmwyl1_2703  binding-protein-dependent transport systems inner membrane component  32.29 
 
 
263 aa  117  1.9999999999999998e-25  Marinomonas sp. MWYL1  Bacteria  normal  0.88688  normal 
 
 
-
 
NC_014148  Plim_2867  binding-protein-dependent transport systems inner membrane component  30.96 
 
 
277 aa  116  3e-25  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_013743  Htur_0667  binding-protein-dependent transport systems inner membrane component  37.5 
 
 
299 aa  116  3e-25  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_007973  Rmet_2120  binding-protein-dependent transport systems inner membrane component  31.48 
 
 
263 aa  116  3e-25  Cupriavidus metallidurans CH34  Bacteria  normal  0.0243564  normal  0.0474626 
 
 
-
 
NC_010681  Bphyt_1832  binding-protein-dependent transport systems inner membrane component  32.56 
 
 
274 aa  115  3.9999999999999997e-25  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.146122 
 
 
-
 
NC_010622  Bphy_0957  binding-protein-dependent transport systems inner membrane component  32.09 
 
 
274 aa  115  5e-25  Burkholderia phymatum STM815  Bacteria  normal  0.199065  normal 
 
 
-
 
NC_012793  GWCH70_2621  binding-protein-dependent transport systems inner membrane component  31.38 
 
 
281 aa  115  6e-25  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.00000218671  n/a   
 
 
-
 
NC_009921  Franean1_4522  binding-protein-dependent transport systems inner membrane component  33.49 
 
 
329 aa  114  1.0000000000000001e-24  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
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