| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1200 |
|---|
| Symbol | |
|---|
| ID | 1220022 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 1268948 |
|---|
| End bp | 1269739 |
|---|
| Gene Length | 792 bp |
|---|
| Protein Length | 263 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637237576 |
|---|
| Product | transmembrane permease ABC transporter protein |
|---|
| Protein accession | NP_519321 |
|---|
| Protein GI | 17545919 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0600] ABC-type nitrate/sulfonate/bicarbonate transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.441856 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.826922 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAATC GTCCGATTTC CCGGCTTTCG TTGCGTGCCT GGCAGCTTGG GCTGCTGGTC
GCCACCCTGG CCGTGTGGCA TGTCGCCACG CGCTCGCAGG AGGTGGCGTT CTTCTTCGGC
GAACCGCTGA TCGTTGCCCA GCGCATCTGG TCGTGGTTCG TCACGGAGGG TGACATCTAT
CAGCATCTCG GCGTCACGCT GGCCGAGACC GTGCTGGCCT TCGGCATCGG CACCGCCACC
GGCCTGGGCG CGGGGCTGTG GCTGGCGCTG AGCCCGTCCG CCTCGGCCGT GCTGGACCCG
TACATCAAGG CCGCCAACTC GATGCCGCGC GTGATTCTGG CGCCGATCTT CGGCGTGTGG
TTCGGGCTGG GCATCTGGTC CAAGGTGGCG CTGGCCGTCA CGCTGGTGTT TTTCATCGTT
TTCTTCAACG TCTACCAGGG CGTGAAGGAG GTCAGCCCGG TGGTGCTGGC CAACGCGCGC
ATGCTGGGCG CCTCGCGGCG GCAGCTGCTG CGCTTCGTCT ACCTGCCGAG CGCGACCAGC
TGGGTGTTCT CGTCGCTGCA CACTTCGGTC GGGCTGGCCT TCGTCGGCGC GGTGGTGGGC
GAATACCTGG GCTCCGCGCG CGGCGTCGGC TACCTGATCC TGCAGGCCGA GGGTACCTTC
GATATCAACA CGGTGTTCGC CGGCATCGTC GTGCTGACCG TGTTCGCGCT GGTGCTGGAC
TGGCTGGTCG GCCTGGCGGA AAAGCGCCTG ATGCGCTGGC AGCCGAAGAC CGGCGAAACC
GAAAAACTGT AA
|
|---|
| Protein sequence | MANRPISRLS LRAWQLGLLV ATLAVWHVAT RSQEVAFFFG EPLIVAQRIW SWFVTEGDIY
QHLGVTLAET VLAFGIGTAT GLGAGLWLAL SPSASAVLDP YIKAANSMPR VILAPIFGVW
FGLGIWSKVA LAVTLVFFIV FFNVYQGVKE VSPVVLANAR MLGASRRQLL RFVYLPSATS
WVFSSLHTSV GLAFVGAVVG EYLGSARGVG YLILQAEGTF DINTVFAGIV VLTVFALVLD
WLVGLAEKRL MRWQPKTGET EKL
|
|---|
| |