More than 300 homologs were found in PanDaTox collection
for query gene Dshi_0906 on replicon NC_009952
Organism: Dinoroseobacter shibae DFL 12



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009952  Dshi_0906  binding-protein-dependent transport systems inner membrane component  100 
 
 
244 aa  471  1e-132  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.53091  normal 
 
 
-
 
NC_008043  TM1040_3658  binding-protein-dependent transport systems inner membrane component  70.82 
 
 
245 aa  314  8e-85  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_0278  binding-protein-dependent transport systems inner membrane component  52.92 
 
 
258 aa  246  3e-64  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_0033  binding-protein-dependent transport systems inner membrane component  58.6 
 
 
243 aa  245  4e-64  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR0211  ABC transporter, permease protein  52.5 
 
 
258 aa  243  3e-63  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_0202  ABC transporter, permease protein  52.08 
 
 
258 aa  239  2e-62  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_2376  ABC transporter substrate binding inner membrane protein  50.45 
 
 
265 aa  226  3e-58  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_011365  Gdia_3269  binding-protein-dependent transport systems inner membrane component  51.98 
 
 
253 aa  223  2e-57  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.283078  normal 
 
 
-
 
NC_007493  RSP_0644  ABC transporter, inner membrane subunit  58.48 
 
 
238 aa  221  9.999999999999999e-57  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_06840  ABC-type nitrate/sulfonate/bicarbonate transport system permease component  50.22 
 
 
266 aa  219  3e-56  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009049  Rsph17029_2297  binding-protein-dependent transport systems inner membrane component  58.04 
 
 
238 aa  219  3e-56  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0792355  normal  0.132671 
 
 
-
 
NC_009428  Rsph17025_0588  binding-protein-dependent transport systems inner membrane component  56.76 
 
 
238 aa  218  7e-56  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.98825  normal 
 
 
-
 
NC_007963  Csal_1933  binding-protein-dependent transport systems inner membrane component  55.07 
 
 
255 aa  217  1e-55  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.323499  n/a   
 
 
-
 
NC_013457  VEA_000865  hydroxymethylpyrimidine ABC transporter transmembrane component  50.21 
 
 
266 aa  216  2e-55  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_3124  binding-protein-dependent transport systems inner membrane component  51.63 
 
 
255 aa  213  1.9999999999999998e-54  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_011313  VSAL_II0488  putative binding protein-dependent transport system, membrane component  51.5 
 
 
272 aa  210  2e-53  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.970837  n/a   
 
 
-
 
NC_013173  Dbac_0926  binding-protein-dependent transport systems inner membrane component  52.78 
 
 
249 aa  208  5e-53  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.04587  n/a   
 
 
-
 
NC_007643  Rru_A1643  binding-protein dependent transport system inner membrane protein  56.31 
 
 
261 aa  201  8e-51  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0353041  n/a   
 
 
-
 
NC_013739  Cwoe_4254  binding-protein-dependent transport systems inner membrane component  39.65 
 
 
283 aa  153  2e-36  Conexibacter woesei DSM 14684  Bacteria  normal  0.0441349  normal  0.902161 
 
 
-
 
NC_013525  Tter_1221  binding-protein-dependent transport systems inner membrane component  39.21 
 
 
246 aa  152  4e-36  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008148  Rxyl_2084  binding-protein-dependent transport systems inner membrane component  44.34 
 
 
260 aa  149  4e-35  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.566245  n/a   
 
 
-
 
NC_009524  PsycPRwf_1445  binding-protein-dependent transport systems inner membrane component  32.77 
 
 
259 aa  149  4e-35  Psychrobacter sp. PRwf-1  Bacteria  normal  normal  0.318112 
 
 
-
 
NC_009253  Dred_3205  binding-protein-dependent transport systems inner membrane component  35.56 
 
 
265 aa  148  6e-35  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.000457845  n/a   
 
 
-
 
NC_012792  Vapar_6052  binding-protein-dependent transport systems inner membrane component  37.05 
 
 
274 aa  147  1.0000000000000001e-34  Variovorax paradoxus S110  Bacteria  normal  0.0454164  n/a   
 
 
-
 
NC_006274  BCZK0354  ABC transporter, permease  34.5 
 
 
265 aa  146  2.0000000000000003e-34  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0446  putative ABC transporter, permease protein  34.06 
 
 
257 aa  147  2.0000000000000003e-34  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_2296  binding-protein-dependent transport systems inner membrane component  40.6 
 
 
250 aa  147  2.0000000000000003e-34  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_13670  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  34.91 
 
 
249 aa  146  3e-34  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B4878  putative ABC transporter, permease protein  34.06 
 
 
255 aa  145  4.0000000000000006e-34  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_0362  binding-protein-dependent transport systems inner membrane component  34.06 
 
 
255 aa  145  6e-34  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0491  ABC transporter, permease protein, putative  33.62 
 
 
257 aa  144  1e-33  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0367  ABC transporter permease  33.62 
 
 
265 aa  144  1e-33  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0424  putative ABC transporter, permease protein  33.62 
 
 
257 aa  144  1e-33  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_005957  BT9727_0357  ABC transporter, permease  33.62 
 
 
265 aa  144  1e-33  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0381  ABC transporter permease  33.62 
 
 
257 aa  144  1e-33  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0493  putative ABC transporter, permease protein  33.19 
 
 
257 aa  143  2e-33  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0370  binding-protein-dependent transport systems inner membrane component  33.62 
 
 
256 aa  139  3e-32  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_1488  binding-protein-dependent transport systems inner membrane component  37.78 
 
 
247 aa  139  3e-32  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_013203  Apar_0391  binding-protein-dependent transport systems inner membrane component  33.92 
 
 
257 aa  139  4.999999999999999e-32  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_2116  binding-protein-dependent transport systems inner membrane component  30.43 
 
 
253 aa  138  7e-32  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_2064  binding-protein-dependent transport systems inner membrane component  30.94 
 
 
254 aa  138  1e-31  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.00112586  n/a   
 
 
-
 
NC_013525  Tter_0403  binding-protein-dependent transport systems inner membrane component  35.53 
 
 
271 aa  135  5e-31  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013515  Smon_0476  binding-protein-dependent transport systems inner membrane component  32.31 
 
 
249 aa  134  9.999999999999999e-31  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_012791  Vapar_1862  binding-protein-dependent transport systems inner membrane component  35.96 
 
 
257 aa  132  3.9999999999999996e-30  Variovorax paradoxus S110  Bacteria  normal  0.116723  n/a   
 
 
-
 
NC_007509  Bcep18194_C7650  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  37.22 
 
 
247 aa  131  1.0000000000000001e-29  Burkholderia sp. 383  Bacteria  normal  0.621765  normal 
 
 
-
 
NC_008786  Veis_0620  binding-protein-dependent transport systems inner membrane component  33.64 
 
 
254 aa  130  1.0000000000000001e-29  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.63161  normal 
 
 
-
 
NC_011894  Mnod_2985  binding-protein-dependent transport systems inner membrane component  35.78 
 
 
273 aa  131  1.0000000000000001e-29  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_3810  binding-protein-dependent transport systems inner membrane component  31.48 
 
 
258 aa  130  2.0000000000000002e-29  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.42897 
 
 
-
 
NC_009486  Tpet_0435  binding-protein-dependent transport systems inner membrane component  32.02 
 
 
250 aa  129  6e-29  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1151  binding-protein-dependent transport systems inner membrane component  34.51 
 
 
254 aa  128  7.000000000000001e-29  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_3961  binding-protein-dependent transport systems inner membrane component  31.03 
 
 
256 aa  128  8.000000000000001e-29  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_0877  binding-protein-dependent transport systems inner membrane component  33.63 
 
 
260 aa  127  1.0000000000000001e-28  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.00000000112184  n/a   
 
 
-
 
NC_007778  RPB_3118  binding-protein dependent transport system inner membrane protein  34.21 
 
 
284 aa  126  2.0000000000000002e-28  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_7629  putative ABC transporter permease protein  33.18 
 
 
282 aa  125  5e-28  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.262472  normal  0.441686 
 
 
-
 
NC_007802  Jann_3753  binding-protein-dependent transport systems inner membrane component  33.04 
 
 
268 aa  123  2e-27  Jannaschia sp. CCS1  Bacteria  normal  0.333865  normal 
 
 
-
 
NC_010483  TRQ2_0450  binding-protein-dependent transport systems inner membrane component  32.51 
 
 
222 aa  123  2e-27  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_1169  putative ABC transporter permease protein  33.48 
 
 
279 aa  122  4e-27  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_3099  binding-protein dependent transport system inner membrane protein  32.44 
 
 
261 aa  122  5e-27  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.578785 
 
 
-
 
NC_014148  Plim_2867  binding-protein-dependent transport systems inner membrane component  31.62 
 
 
277 aa  120  9.999999999999999e-27  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0770  binding-protein-dependent transport systems inner membrane component  34.11 
 
 
273 aa  121  9.999999999999999e-27  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_005957  BT9727_0637  ABC transporter, permease  32.24 
 
 
250 aa  120  1.9999999999999998e-26  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00537874  n/a   
 
 
-
 
NC_011725  BCB4264_A0784  putative ABC transporter, permease protein  34.4 
 
 
250 aa  120  1.9999999999999998e-26  Bacillus cereus B4264  Bacteria  normal  0.605831  n/a   
 
 
-
 
NC_012856  Rpic12D_1136  binding-protein-dependent transport systems inner membrane component  38.24 
 
 
263 aa  120  1.9999999999999998e-26  Ralstonia pickettii 12D  Bacteria  normal  0.629035  normal  0.968824 
 
 
-
 
NC_010682  Rpic_1044  binding-protein-dependent transport systems inner membrane component  37.75 
 
 
263 aa  120  1.9999999999999998e-26  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_0797  ABC transporter, permease protein, putative  34.4 
 
 
250 aa  120  3e-26  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0637  ABC transporter, permease  31.84 
 
 
250 aa  119  3e-26  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_009669  Oant_4580  binding-protein-dependent transport systems inner membrane component  34.78 
 
 
257 aa  120  3e-26  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0693  ABC transporter permease  31.84 
 
 
250 aa  119  3.9999999999999996e-26  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_1668  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
288 aa  119  3.9999999999999996e-26  Nakamurella multipartita DSM 44233  Bacteria  normal  0.173855  normal  0.365472 
 
 
-
 
NC_007530  GBAA_0727  ABC transporter permease  31.84 
 
 
250 aa  119  3.9999999999999996e-26  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0363276  n/a   
 
 
-
 
NC_011773  BCAH820_0804  putative ABC transporter, permease protein  32.1 
 
 
250 aa  119  3.9999999999999996e-26  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.22036e-46 
 
 
-
 
NC_008786  Veis_3506  binding-protein-dependent transport systems inner membrane component  32 
 
 
282 aa  118  7e-26  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0528385  normal  0.0939424 
 
 
-
 
NC_009674  Bcer98_0614  binding-protein-dependent transport systems inner membrane component  34.4 
 
 
250 aa  118  9.999999999999999e-26  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0881  putative ABC transporter, permease protein  33.94 
 
 
251 aa  117  9.999999999999999e-26  Bacillus cereus AH187  Bacteria  hitchhiker  0.00328051  n/a   
 
 
-
 
NC_013093  Amir_4887  binding-protein-dependent transport systems inner membrane component  35.92 
 
 
267 aa  118  9.999999999999999e-26  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0643  binding-protein-dependent transport systems inner membrane component  33.49 
 
 
251 aa  117  1.9999999999999998e-25  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4547  putative ABC transporter, permease protein  33.49 
 
 
251 aa  117  1.9999999999999998e-25  Bacillus cereus G9842  Bacteria  normal  0.113137  normal  0.441246 
 
 
-
 
NC_009921  Franean1_4522  binding-protein-dependent transport systems inner membrane component  31.94 
 
 
329 aa  117  1.9999999999999998e-25  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc1200  transmembrane permease ABC transporter protein  36.76 
 
 
263 aa  116  3e-25  Ralstonia solanacearum GMI1000  Bacteria  normal  0.441856  normal  0.826922 
 
 
-
 
NC_012791  Vapar_0620  binding-protein-dependent transport systems inner membrane component  33.47 
 
 
258 aa  116  3e-25  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_3035  binding-protein-dependent transport systems inner membrane component  33.62 
 
 
256 aa  115  5e-25  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1095  binding-protein-dependent transport systems inner membrane component  30.04 
 
 
255 aa  115  8.999999999999998e-25  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_010622  Bphy_0957  binding-protein-dependent transport systems inner membrane component  33.95 
 
 
274 aa  113  2.0000000000000002e-24  Burkholderia phymatum STM815  Bacteria  normal  0.199065  normal 
 
 
-
 
NC_007951  Bxe_A2355  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  33.95 
 
 
274 aa  113  2.0000000000000002e-24  Burkholderia xenovorans LB400  Bacteria  normal  0.214574  normal  0.0382396 
 
 
-
 
NC_014151  Cfla_3017  binding-protein-dependent transport systems inner membrane component  35.48 
 
 
253 aa  113  2.0000000000000002e-24  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.946292  normal 
 
 
-
 
NC_008786  Veis_2127  binding-protein-dependent transport systems inner membrane component  31.3 
 
 
255 aa  114  2.0000000000000002e-24  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.427162 
 
 
-
 
NC_009523  RoseRS_2763  binding-protein-dependent transport systems inner membrane component  34.74 
 
 
275 aa  112  4.0000000000000004e-24  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_3093  binding-protein dependent transport system inner membrane protein  34.1 
 
 
259 aa  112  4.0000000000000004e-24  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.942666 
 
 
-
 
NC_012791  Vapar_2336  binding-protein-dependent transport systems inner membrane component  36.98 
 
 
277 aa  112  5e-24  Variovorax paradoxus S110  Bacteria  normal  0.544063  n/a   
 
 
-
 
NC_009654  Mmwyl1_2703  binding-protein-dependent transport systems inner membrane component  30.32 
 
 
263 aa  112  6e-24  Marinomonas sp. MWYL1  Bacteria  normal  0.88688  normal 
 
 
-
 
NC_013739  Cwoe_2762  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
250 aa  112  6e-24  Conexibacter woesei DSM 14684  Bacteria  normal  0.0247808  normal  0.0244453 
 
 
-
 
NC_009921  Franean1_3131  binding-protein-dependent transport systems inner membrane component  31.42 
 
 
281 aa  111  8.000000000000001e-24  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_2274  binding-protein-dependent transport systems inner membrane component  36.22 
 
 
279 aa  111  9e-24  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_1091  binding-protein-dependent transport systems inner membrane component  29.44 
 
 
258 aa  111  1.0000000000000001e-23  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0347556  normal 
 
 
-
 
NC_011831  Cagg_2734  binding-protein-dependent transport systems inner membrane component  36.21 
 
 
267 aa  111  1.0000000000000001e-23  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.549296  normal 
 
 
-
 
NC_009767  Rcas_2389  binding-protein-dependent transport systems inner membrane component  35.75 
 
 
275 aa  110  2.0000000000000002e-23  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_1308  binding-protein-dependent transport systems inner membrane component  37.77 
 
 
254 aa  110  2.0000000000000002e-23  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.0000169849 
 
 
-
 
NC_012852  Rleg_6281  binding-protein-dependent transport systems inner membrane component  29.57 
 
 
256 aa  109  3e-23  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.783663  normal 
 
 
-
 
NC_013739  Cwoe_1643  binding-protein-dependent transport systems inner membrane component  35.87 
 
 
259 aa  110  3e-23  Conexibacter woesei DSM 14684  Bacteria  normal  0.805205  normal  0.60128 
 
 
-
 
NC_010681  Bphyt_1832  binding-protein-dependent transport systems inner membrane component  33.95 
 
 
274 aa  110  3e-23  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.146122 
 
 
-
 
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