More than 300 homologs were found in PanDaTox collection
for query gene Vapar_3961 on replicon NC_012791
Organism: Variovorax paradoxus S110



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012791  Vapar_3961  binding-protein-dependent transport systems inner membrane component  100 
 
 
256 aa  509  1e-143  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_1091  binding-protein-dependent transport systems inner membrane component  87.45 
 
 
258 aa  452  1.0000000000000001e-126  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0347556  normal 
 
 
-
 
NC_010002  Daci_1140  binding-protein-dependent transport systems inner membrane component  84.65 
 
 
255 aa  431  1e-120  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_1095  binding-protein-dependent transport systems inner membrane component  82.21 
 
 
255 aa  424  1e-118  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008786  Veis_2127  binding-protein-dependent transport systems inner membrane component  79.53 
 
 
255 aa  410  1e-113  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.427162 
 
 
-
 
NC_007973  Rmet_0394  binding-protein-dependent transport systems inner membrane component  77.2 
 
 
259 aa  381  1e-105  Cupriavidus metallidurans CH34  Bacteria  normal  hitchhiker  0.00657833 
 
 
-
 
NC_013946  Mrub_1393  binding-protein-dependent transport systems inner membrane component  50.63 
 
 
254 aa  252  4.0000000000000004e-66  Meiothermus ruber DSM 1279  Bacteria  normal  0.302994  normal  0.157809 
 
 
-
 
NC_009720  Xaut_3758  binding-protein-dependent transport systems inner membrane component  50.4 
 
 
256 aa  251  7e-66  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_3606  binding-protein-dependent transport systems inner membrane component  46.46 
 
 
257 aa  239  2e-62  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.071611 
 
 
-
 
NC_007493  RSP_0942  ABC transporter, inner membrane subunit  41.28 
 
 
254 aa  172  5.999999999999999e-42  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2601  binding-protein-dependent transport systems inner membrane component  41.28 
 
 
254 aa  171  1e-41  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_2973  binding-protein-dependent transport systems inner membrane component  41.28 
 
 
254 aa  170  2e-41  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.107448 
 
 
-
 
NC_012791  Vapar_1862  binding-protein-dependent transport systems inner membrane component  35.32 
 
 
257 aa  162  3e-39  Variovorax paradoxus S110  Bacteria  normal  0.116723  n/a   
 
 
-
 
NC_008786  Veis_0620  binding-protein-dependent transport systems inner membrane component  36.07 
 
 
254 aa  162  4.0000000000000004e-39  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.63161  normal 
 
 
-
 
NC_013739  Cwoe_4254  binding-protein-dependent transport systems inner membrane component  33.47 
 
 
283 aa  162  5.0000000000000005e-39  Conexibacter woesei DSM 14684  Bacteria  normal  0.0441349  normal  0.902161 
 
 
-
 
NC_012792  Vapar_6052  binding-protein-dependent transport systems inner membrane component  35.74 
 
 
274 aa  157  2e-37  Variovorax paradoxus S110  Bacteria  normal  0.0454164  n/a   
 
 
-
 
NC_009669  Oant_4580  binding-protein-dependent transport systems inner membrane component  32.95 
 
 
257 aa  151  8.999999999999999e-36  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_1939  putative ABC transporter permease protein  40.81 
 
 
273 aa  150  2e-35  Dinoroseobacter shibae DFL 12  Bacteria  normal  hitchhiker  0.0000752264 
 
 
-
 
NC_007778  RPB_3118  binding-protein dependent transport system inner membrane protein  34.91 
 
 
284 aa  144  2e-33  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_1221  binding-protein-dependent transport systems inner membrane component  30.04 
 
 
246 aa  142  4e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009654  Mmwyl1_2703  binding-protein-dependent transport systems inner membrane component  32.48 
 
 
263 aa  140  1.9999999999999998e-32  Marinomonas sp. MWYL1  Bacteria  normal  0.88688  normal 
 
 
-
 
NC_011988  Avi_5406  ABC transporter membrane spanning protein  33.62 
 
 
251 aa  138  7.999999999999999e-32  Agrobacterium vitis S4  Bacteria  normal  0.408693  n/a   
 
 
-
 
NC_012791  Vapar_0620  binding-protein-dependent transport systems inner membrane component  34.06 
 
 
258 aa  136  3.0000000000000003e-31  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0797  ABC transporter, permease protein, putative  32.54 
 
 
250 aa  135  6.0000000000000005e-31  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0881  putative ABC transporter, permease protein  32.54 
 
 
251 aa  135  9e-31  Bacillus cereus AH187  Bacteria  hitchhiker  0.00328051  n/a   
 
 
-
 
NC_009253  Dred_3205  binding-protein-dependent transport systems inner membrane component  29.39 
 
 
265 aa  134  9.999999999999999e-31  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.000457845  n/a   
 
 
-
 
NC_011772  BCG9842_B4547  putative ABC transporter, permease protein  31.75 
 
 
251 aa  132  3.9999999999999996e-30  Bacillus cereus G9842  Bacteria  normal  0.113137  normal  0.441246 
 
 
-
 
NC_010681  Bphyt_1488  binding-protein-dependent transport systems inner membrane component  32.22 
 
 
247 aa  132  5e-30  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_3131  binding-protein-dependent transport systems inner membrane component  28.23 
 
 
281 aa  132  5e-30  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_006274  BCZK0637  ABC transporter, permease  31.87 
 
 
250 aa  132  6e-30  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0643  binding-protein-dependent transport systems inner membrane component  32.54 
 
 
251 aa  132  6e-30  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0804  putative ABC transporter, permease protein  31.87 
 
 
250 aa  132  6e-30  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.22036e-46 
 
 
-
 
NC_005945  BAS0693  ABC transporter permease  31.87 
 
 
250 aa  132  6.999999999999999e-30  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0727  ABC transporter permease  31.87 
 
 
250 aa  132  6.999999999999999e-30  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0363276  n/a   
 
 
-
 
NC_005957  BT9727_0637  ABC transporter, permease  31.87 
 
 
250 aa  132  7.999999999999999e-30  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00537874  n/a   
 
 
-
 
NC_011725  BCB4264_A0784  putative ABC transporter, permease protein  30.16 
 
 
250 aa  130  3e-29  Bacillus cereus B4264  Bacteria  normal  0.605831  n/a   
 
 
-
 
NC_007509  Bcep18194_C7650  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  32.58 
 
 
247 aa  129  5.0000000000000004e-29  Burkholderia sp. 383  Bacteria  normal  0.621765  normal 
 
 
-
 
NC_011894  Mnod_2985  binding-protein-dependent transport systems inner membrane component  28.09 
 
 
273 aa  129  5.0000000000000004e-29  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0614  binding-protein-dependent transport systems inner membrane component  29.76 
 
 
250 aa  129  5.0000000000000004e-29  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3099  binding-protein dependent transport system inner membrane protein  27.78 
 
 
261 aa  128  8.000000000000001e-29  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.578785 
 
 
-
 
NC_009953  Sare_4268  binding-protein-dependent transport systems inner membrane component  30.47 
 
 
282 aa  126  3e-28  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0113678 
 
 
-
 
NC_009523  RoseRS_0669  binding-protein-dependent transport systems inner membrane component  31.56 
 
 
272 aa  126  4.0000000000000003e-28  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0848141 
 
 
-
 
NC_007778  RPB_3093  binding-protein dependent transport system inner membrane protein  30 
 
 
259 aa  126  4.0000000000000003e-28  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.942666 
 
 
-
 
NC_007802  Jann_3753  binding-protein-dependent transport systems inner membrane component  31.03 
 
 
268 aa  125  4.0000000000000003e-28  Jannaschia sp. CCS1  Bacteria  normal  0.333865  normal 
 
 
-
 
NC_009012  Cthe_2116  binding-protein-dependent transport systems inner membrane component  28.27 
 
 
253 aa  126  4.0000000000000003e-28  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_3810  binding-protein-dependent transport systems inner membrane component  29.61 
 
 
258 aa  125  6e-28  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.42897 
 
 
-
 
NC_009380  Strop_3877  binding-protein-dependent transport systems inner membrane component  32.5 
 
 
282 aa  125  7e-28  Salinispora tropica CNB-440  Bacteria  normal  0.901388  normal 
 
 
-
 
NC_014151  Cfla_3017  binding-protein-dependent transport systems inner membrane component  32.03 
 
 
253 aa  125  8.000000000000001e-28  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.946292  normal 
 
 
-
 
NC_010622  Bphy_0957  binding-protein-dependent transport systems inner membrane component  29.7 
 
 
274 aa  124  1e-27  Burkholderia phymatum STM815  Bacteria  normal  0.199065  normal 
 
 
-
 
NC_010511  M446_0770  binding-protein-dependent transport systems inner membrane component  26.92 
 
 
273 aa  124  1e-27  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_7629  putative ABC transporter permease protein  30.38 
 
 
282 aa  124  1e-27  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.262472  normal  0.441686 
 
 
-
 
NC_009485  BBta_1169  putative ABC transporter permease protein  29.62 
 
 
279 aa  123  2e-27  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_0814  binding-protein-dependent transport systems inner membrane component  27.04 
 
 
270 aa  124  2e-27  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_0906  binding-protein-dependent transport systems inner membrane component  31.03 
 
 
244 aa  122  7e-27  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.53091  normal 
 
 
-
 
NC_013165  Shel_13670  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  25.82 
 
 
249 aa  122  8e-27  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_2084  binding-protein-dependent transport systems inner membrane component  32.16 
 
 
260 aa  121  9.999999999999999e-27  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.566245  n/a   
 
 
-
 
NC_009921  Franean1_4522  binding-protein-dependent transport systems inner membrane component  31.47 
 
 
329 aa  120  3e-26  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_0891  binding-protein-dependent transport systems inner membrane component  30.58 
 
 
268 aa  119  3.9999999999999996e-26  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.223421 
 
 
-
 
NC_012850  Rleg_3934  binding-protein-dependent transport systems inner membrane component  28.63 
 
 
278 aa  119  3.9999999999999996e-26  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.421742  normal 
 
 
-
 
NC_013457  VEA_000865  hydroxymethylpyrimidine ABC transporter transmembrane component  28.45 
 
 
266 aa  119  4.9999999999999996e-26  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_3506  binding-protein-dependent transport systems inner membrane component  27.43 
 
 
282 aa  119  4.9999999999999996e-26  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0528385  normal  0.0939424 
 
 
-
 
NC_009784  VIBHAR_06840  ABC-type nitrate/sulfonate/bicarbonate transport system permease component  28.09 
 
 
266 aa  119  6e-26  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010172  Mext_1261  binding-protein-dependent transport systems inner membrane component  26.36 
 
 
273 aa  118  9.999999999999999e-26  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.306936 
 
 
-
 
NC_011757  Mchl_1422  binding-protein-dependent transport systems inner membrane component  26.36 
 
 
273 aa  118  9.999999999999999e-26  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_013517  Sterm_2064  binding-protein-dependent transport systems inner membrane component  26.58 
 
 
254 aa  117  1.9999999999999998e-25  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.00112586  n/a   
 
 
-
 
NC_011894  Mnod_3419  binding-protein-dependent transport systems inner membrane component  31.05 
 
 
258 aa  116  3e-25  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.121812  n/a   
 
 
-
 
NC_011725  BCB4264_A0446  putative ABC transporter, permease protein  25.59 
 
 
257 aa  116  3e-25  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4878  putative ABC transporter, permease protein  25.29 
 
 
255 aa  116  3e-25  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_2588  binding-protein-dependent transport systems inner membrane component  26.85 
 
 
267 aa  117  3e-25  Pseudomonas putida W619  Bacteria  normal  normal  0.417353 
 
 
-
 
NC_003909  BCE_0491  ABC transporter, permease protein, putative  25.59 
 
 
257 aa  116  3.9999999999999997e-25  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0367  ABC transporter permease  25.59 
 
 
265 aa  116  3.9999999999999997e-25  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0357  ABC transporter, permease  25.59 
 
 
265 aa  116  3.9999999999999997e-25  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0381  ABC transporter permease  25.59 
 
 
257 aa  116  3.9999999999999997e-25  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0493  putative ABC transporter, permease protein  25.59 
 
 
257 aa  116  3.9999999999999997e-25  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0424  putative ABC transporter, permease protein  25.59 
 
 
257 aa  116  3.9999999999999997e-25  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_010172  Mext_1719  binding-protein-dependent transport systems inner membrane component  26.29 
 
 
264 aa  115  5e-25  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_006274  BCZK0354  ABC transporter, permease  25.2 
 
 
265 aa  115  6e-25  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A2355  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  28.73 
 
 
274 aa  115  6e-25  Burkholderia xenovorans LB400  Bacteria  normal  0.214574  normal  0.0382396 
 
 
-
 
NC_010725  Mpop_1211  binding-protein-dependent transport systems inner membrane component  25.58 
 
 
273 aa  114  1.0000000000000001e-24  Methylobacterium populi BJ001  Bacteria  normal  0.132759  normal  0.452833 
 
 
-
 
NC_013739  Cwoe_5602  binding-protein-dependent transport systems inner membrane component  31.02 
 
 
263 aa  115  1.0000000000000001e-24  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_3210  ABC transporter, permease protein  26.32 
 
 
267 aa  114  2.0000000000000002e-24  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_3645  binding-protein-dependent transport systems inner membrane component  27.78 
 
 
268 aa  114  2.0000000000000002e-24  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_0370  binding-protein-dependent transport systems inner membrane component  24.48 
 
 
256 aa  113  2.0000000000000002e-24  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_014150  Bmur_0154  binding-protein-dependent transport systems inner membrane component  25.94 
 
 
264 aa  114  2.0000000000000002e-24  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0666  binding-protein-dependent transport systems inner membrane component  30.38 
 
 
272 aa  113  3e-24  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_1832  binding-protein-dependent transport systems inner membrane component  28.36 
 
 
274 aa  113  3e-24  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.146122 
 
 
-
 
NC_011757  Mchl_2038  binding-protein-dependent transport systems inner membrane component  27.08 
 
 
264 aa  113  3e-24  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.697058  normal  0.743835 
 
 
-
 
NC_007953  Bxe_C0801  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  27.71 
 
 
298 aa  113  3e-24  Burkholderia xenovorans LB400  Bacteria  normal  0.0745387  normal 
 
 
-
 
NC_008686  Pden_0033  binding-protein-dependent transport systems inner membrane component  32.42 
 
 
243 aa  113  3e-24  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009484  Acry_0832  binding-protein-dependent transport systems inner membrane component  29.63 
 
 
254 aa  113  4.0000000000000004e-24  Acidiphilium cryptum JF-5  Bacteria  normal  0.404323  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0362  binding-protein-dependent transport systems inner membrane component  25 
 
 
255 aa  112  6e-24  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_014148  Plim_2867  binding-protein-dependent transport systems inner membrane component  28.94 
 
 
277 aa  112  7.000000000000001e-24  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0521  binding-protein-dependent transport systems inner membrane component  28.57 
 
 
292 aa  112  7.000000000000001e-24  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.367955 
 
 
-
 
NC_011004  Rpal_4641  binding-protein-dependent transport systems inner membrane component  28.57 
 
 
277 aa  112  8.000000000000001e-24  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.750363  n/a   
 
 
-
 
NC_011313  VSAL_II0488  putative binding protein-dependent transport system, membrane component  28.97 
 
 
272 aa  112  8.000000000000001e-24  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.970837  n/a   
 
 
-
 
NC_013521  Sked_02100  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  28.57 
 
 
308 aa  111  9e-24  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_2627  binding-protein-dependent transport systems inner membrane component  29.85 
 
 
288 aa  111  1.0000000000000001e-23  Actinosynnema mirum DSM 43827  Bacteria  normal  0.752734  n/a   
 
 
-
 
NC_013525  Tter_0403  binding-protein-dependent transport systems inner membrane component  28.75 
 
 
271 aa  111  1.0000000000000001e-23  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011831  Cagg_3116  binding-protein-dependent transport systems inner membrane component  31.8 
 
 
272 aa  110  3e-23  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.025765  normal 
 
 
-
 
NC_012791  Vapar_4760  binding-protein-dependent transport systems inner membrane component  27.89 
 
 
267 aa  110  3e-23  Variovorax paradoxus S110  Bacteria  normal  0.318809  n/a   
 
 
-
 
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