More than 300 homologs were found in PanDaTox collection
for query gene Daci_1140 on replicon NC_010002
Organism: Delftia acidovorans SPH-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010002  Daci_1140  binding-protein-dependent transport systems inner membrane component  100 
 
 
255 aa  502  1e-141  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_1091  binding-protein-dependent transport systems inner membrane component  88.58 
 
 
258 aa  448  1e-125  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0347556  normal 
 
 
-
 
NC_012791  Vapar_3961  binding-protein-dependent transport systems inner membrane component  84.65 
 
 
256 aa  431  1e-120  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_2127  binding-protein-dependent transport systems inner membrane component  82.75 
 
 
255 aa  429  1e-119  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.427162 
 
 
-
 
NC_010524  Lcho_1095  binding-protein-dependent transport systems inner membrane component  81.1 
 
 
255 aa  420  1e-116  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007973  Rmet_0394  binding-protein-dependent transport systems inner membrane component  77.29 
 
 
259 aa  380  1e-104  Cupriavidus metallidurans CH34  Bacteria  normal  hitchhiker  0.00657833 
 
 
-
 
NC_009720  Xaut_3758  binding-protein-dependent transport systems inner membrane component  51.59 
 
 
256 aa  258  5.0000000000000005e-68  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_1393  binding-protein-dependent transport systems inner membrane component  51.71 
 
 
254 aa  251  8.000000000000001e-66  Meiothermus ruber DSM 1279  Bacteria  normal  0.302994  normal  0.157809 
 
 
-
 
NC_010511  M446_3606  binding-protein-dependent transport systems inner membrane component  46.8 
 
 
257 aa  235  4e-61  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.071611 
 
 
-
 
NC_012791  Vapar_1862  binding-protein-dependent transport systems inner membrane component  34.96 
 
 
257 aa  169  4e-41  Variovorax paradoxus S110  Bacteria  normal  0.116723  n/a   
 
 
-
 
NC_008786  Veis_0620  binding-protein-dependent transport systems inner membrane component  36.82 
 
 
254 aa  168  6e-41  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.63161  normal 
 
 
-
 
NC_007493  RSP_0942  ABC transporter, inner membrane subunit  37.96 
 
 
254 aa  164  1.0000000000000001e-39  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2601  binding-protein-dependent transport systems inner membrane component  37.96 
 
 
254 aa  164  1.0000000000000001e-39  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_2973  binding-protein-dependent transport systems inner membrane component  37.96 
 
 
254 aa  164  2.0000000000000002e-39  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.107448 
 
 
-
 
NC_009952  Dshi_1939  putative ABC transporter permease protein  39.02 
 
 
273 aa  154  1e-36  Dinoroseobacter shibae DFL 12  Bacteria  normal  hitchhiker  0.0000752264 
 
 
-
 
NC_012792  Vapar_6052  binding-protein-dependent transport systems inner membrane component  34.73 
 
 
274 aa  153  2.9999999999999998e-36  Variovorax paradoxus S110  Bacteria  normal  0.0454164  n/a   
 
 
-
 
NC_009921  Franean1_3131  binding-protein-dependent transport systems inner membrane component  28.79 
 
 
281 aa  149  6e-35  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_4254  binding-protein-dependent transport systems inner membrane component  32.92 
 
 
283 aa  145  5e-34  Conexibacter woesei DSM 14684  Bacteria  normal  0.0441349  normal  0.902161 
 
 
-
 
NC_012791  Vapar_0620  binding-protein-dependent transport systems inner membrane component  34.93 
 
 
258 aa  140  1.9999999999999998e-32  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3099  binding-protein dependent transport system inner membrane protein  29.91 
 
 
261 aa  138  7e-32  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.578785 
 
 
-
 
NC_007778  RPB_3118  binding-protein dependent transport system inner membrane protein  32.6 
 
 
284 aa  135  5e-31  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009669  Oant_4580  binding-protein-dependent transport systems inner membrane component  30.77 
 
 
257 aa  135  8e-31  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1221  binding-protein-dependent transport systems inner membrane component  30.86 
 
 
246 aa  134  9.999999999999999e-31  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011988  Avi_5406  ABC transporter membrane spanning protein  32.19 
 
 
251 aa  132  6e-30  Agrobacterium vitis S4  Bacteria  normal  0.408693  n/a   
 
 
-
 
NC_009654  Mmwyl1_2703  binding-protein-dependent transport systems inner membrane component  31.62 
 
 
263 aa  132  6e-30  Marinomonas sp. MWYL1  Bacteria  normal  0.88688  normal 
 
 
-
 
NC_003909  BCE_0797  ABC transporter, permease protein, putative  33.91 
 
 
250 aa  132  6.999999999999999e-30  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0881  putative ABC transporter, permease protein  33.91 
 
 
251 aa  131  7.999999999999999e-30  Bacillus cereus AH187  Bacteria  hitchhiker  0.00328051  n/a   
 
 
-
 
NC_007778  RPB_3093  binding-protein dependent transport system inner membrane protein  30.49 
 
 
259 aa  130  2.0000000000000002e-29  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.942666 
 
 
-
 
NC_011772  BCG9842_B4547  putative ABC transporter, permease protein  33.33 
 
 
251 aa  130  2.0000000000000002e-29  Bacillus cereus G9842  Bacteria  normal  0.113137  normal  0.441246 
 
 
-
 
NC_006274  BCZK0637  ABC transporter, permease  32.88 
 
 
250 aa  129  4.0000000000000003e-29  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0804  putative ABC transporter, permease protein  32.88 
 
 
250 aa  129  4.0000000000000003e-29  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.22036e-46 
 
 
-
 
NC_008254  Meso_0814  binding-protein-dependent transport systems inner membrane component  29.18 
 
 
270 aa  129  4.0000000000000003e-29  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0693  ABC transporter permease  32.88 
 
 
250 aa  129  5.0000000000000004e-29  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0637  ABC transporter, permease  32.88 
 
 
250 aa  129  5.0000000000000004e-29  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00537874  n/a   
 
 
-
 
NC_007530  GBAA_0727  ABC transporter permease  32.88 
 
 
250 aa  129  5.0000000000000004e-29  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0363276  n/a   
 
 
-
 
NC_009485  BBta_7629  putative ABC transporter permease protein  31.9 
 
 
282 aa  129  6e-29  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.262472  normal  0.441686 
 
 
-
 
NC_010184  BcerKBAB4_0643  binding-protein-dependent transport systems inner membrane component  34.33 
 
 
251 aa  128  7.000000000000001e-29  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_3753  binding-protein-dependent transport systems inner membrane component  29.55 
 
 
268 aa  128  9.000000000000001e-29  Jannaschia sp. CCS1  Bacteria  normal  0.333865  normal 
 
 
-
 
NC_013739  Cwoe_3810  binding-protein-dependent transport systems inner membrane component  29.26 
 
 
258 aa  128  1.0000000000000001e-28  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.42897 
 
 
-
 
NC_011725  BCB4264_A0784  putative ABC transporter, permease protein  32.42 
 
 
250 aa  127  1.0000000000000001e-28  Bacillus cereus B4264  Bacteria  normal  0.605831  n/a   
 
 
-
 
NC_009012  Cthe_2116  binding-protein-dependent transport systems inner membrane component  29.61 
 
 
253 aa  127  1.0000000000000001e-28  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0770  binding-protein-dependent transport systems inner membrane component  29.11 
 
 
273 aa  127  2.0000000000000002e-28  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_2985  binding-protein-dependent transport systems inner membrane component  28.51 
 
 
273 aa  126  3e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_3877  binding-protein-dependent transport systems inner membrane component  33.62 
 
 
282 aa  126  3e-28  Salinispora tropica CNB-440  Bacteria  normal  0.901388  normal 
 
 
-
 
NC_009485  BBta_1169  putative ABC transporter permease protein  31.43 
 
 
279 aa  125  5e-28  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_0614  binding-protein-dependent transport systems inner membrane component  31.05 
 
 
250 aa  125  6e-28  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_4268  binding-protein-dependent transport systems inner membrane component  31.78 
 
 
282 aa  124  2e-27  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0113678 
 
 
-
 
NC_009253  Dred_3205  binding-protein-dependent transport systems inner membrane component  26.98 
 
 
265 aa  122  4e-27  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.000457845  n/a   
 
 
-
 
NC_010622  Bphy_0957  binding-protein-dependent transport systems inner membrane component  30.86 
 
 
274 aa  122  7e-27  Burkholderia phymatum STM815  Bacteria  normal  0.199065  normal 
 
 
-
 
NC_010681  Bphyt_1488  binding-protein-dependent transport systems inner membrane component  33.95 
 
 
247 aa  122  7e-27  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007509  Bcep18194_C7650  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  33.48 
 
 
247 aa  122  8e-27  Burkholderia sp. 383  Bacteria  normal  0.621765  normal 
 
 
-
 
NC_013165  Shel_13670  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  28.74 
 
 
249 aa  120  1.9999999999999998e-26  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_2588  binding-protein-dependent transport systems inner membrane component  28.44 
 
 
267 aa  119  3.9999999999999996e-26  Pseudomonas putida W619  Bacteria  normal  normal  0.417353 
 
 
-
 
NC_009719  Plav_0891  binding-protein-dependent transport systems inner membrane component  30.47 
 
 
268 aa  119  6e-26  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.223421 
 
 
-
 
NC_013521  Sked_02100  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  29.78 
 
 
308 aa  118  7.999999999999999e-26  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_3181  binding-protein-dependent transport systems inner membrane component  29.92 
 
 
277 aa  118  9e-26  Burkholderia phymatum STM815  Bacteria  normal  0.0283642  normal 
 
 
-
 
NC_013093  Amir_2627  binding-protein-dependent transport systems inner membrane component  27.27 
 
 
288 aa  118  9.999999999999999e-26  Actinosynnema mirum DSM 43827  Bacteria  normal  0.752734  n/a   
 
 
-
 
NC_009523  RoseRS_0669  binding-protein-dependent transport systems inner membrane component  32.23 
 
 
272 aa  118  9.999999999999999e-26  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0848141 
 
 
-
 
NC_011830  Dhaf_0877  binding-protein-dependent transport systems inner membrane component  23.72 
 
 
260 aa  118  9.999999999999999e-26  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.00000000112184  n/a   
 
 
-
 
NC_009784  VIBHAR_06840  ABC-type nitrate/sulfonate/bicarbonate transport system permease component  27.66 
 
 
266 aa  117  1.9999999999999998e-25  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013457  VEA_000865  hydroxymethylpyrimidine ABC transporter transmembrane component  28.09 
 
 
266 aa  117  1.9999999999999998e-25  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0493  putative ABC transporter, permease protein  27.16 
 
 
257 aa  117  1.9999999999999998e-25  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0491  ABC transporter, permease protein, putative  27.16 
 
 
257 aa  116  3e-25  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0381  ABC transporter permease  25.4 
 
 
257 aa  116  3e-25  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_2084  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
260 aa  117  3e-25  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.566245  n/a   
 
 
-
 
NC_011773  BCAH820_0424  putative ABC transporter, permease protein  25.4 
 
 
257 aa  116  3e-25  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_010001  Cphy_0802  binding-protein-dependent transport systems inner membrane component  27.17 
 
 
274 aa  116  3e-25  Clostridium phytofermentans ISDg  Bacteria  normal  0.240571  n/a   
 
 
-
 
NC_005945  BAS0367  ABC transporter permease  25.4 
 
 
265 aa  116  3.9999999999999997e-25  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0357  ABC transporter, permease  25.4 
 
 
265 aa  116  3.9999999999999997e-25  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_1261  binding-protein-dependent transport systems inner membrane component  28.06 
 
 
273 aa  116  3.9999999999999997e-25  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.306936 
 
 
-
 
NC_010172  Mext_1719  binding-protein-dependent transport systems inner membrane component  27.08 
 
 
264 aa  116  3.9999999999999997e-25  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_1422  binding-protein-dependent transport systems inner membrane component  28.06 
 
 
273 aa  116  3.9999999999999997e-25  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_3210  ABC transporter, permease protein  27.56 
 
 
267 aa  115  5e-25  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_006274  BCZK0354  ABC transporter, permease  25 
 
 
265 aa  115  5e-25  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_4522  binding-protein-dependent transport systems inner membrane component  33.17 
 
 
329 aa  115  6.9999999999999995e-25  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A2355  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  30.08 
 
 
274 aa  115  6.9999999999999995e-25  Burkholderia xenovorans LB400  Bacteria  normal  0.214574  normal  0.0382396 
 
 
-
 
NC_011772  BCG9842_B4878  putative ABC transporter, permease protein  25 
 
 
255 aa  115  7.999999999999999e-25  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_0521  binding-protein-dependent transport systems inner membrane component  29.47 
 
 
292 aa  115  7.999999999999999e-25  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.367955 
 
 
-
 
NC_011725  BCB4264_A0446  putative ABC transporter, permease protein  25 
 
 
257 aa  115  7.999999999999999e-25  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_014150  Bmur_0154  binding-protein-dependent transport systems inner membrane component  25.73 
 
 
264 aa  114  1.0000000000000001e-24  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0362  binding-protein-dependent transport systems inner membrane component  26.78 
 
 
255 aa  114  2.0000000000000002e-24  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_1974  binding-protein dependent transport system inner membrane protein  29.91 
 
 
261 aa  114  2.0000000000000002e-24  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.000000226251  normal 
 
 
-
 
NC_007951  Bxe_A2015  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  28.98 
 
 
252 aa  113  2.0000000000000002e-24  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_5602  binding-protein-dependent transport systems inner membrane component  33.46 
 
 
263 aa  114  2.0000000000000002e-24  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_0278  binding-protein-dependent transport systems inner membrane component  28.57 
 
 
258 aa  114  2.0000000000000002e-24  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_2038  binding-protein-dependent transport systems inner membrane component  26.67 
 
 
264 aa  114  2.0000000000000002e-24  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.697058  normal  0.743835 
 
 
-
 
NC_009253  Dred_1834  binding-protein-dependent transport systems inner membrane component  29.66 
 
 
268 aa  114  2.0000000000000002e-24  Desulfotomaculum reducens MI-1  Bacteria  normal  0.101401  n/a   
 
 
-
 
NC_007298  Daro_2152  binding-protein dependent transport system inner membrane protein  28.4 
 
 
271 aa  113  3e-24  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.529987 
 
 
-
 
NC_010725  Mpop_1211  binding-protein-dependent transport systems inner membrane component  27.27 
 
 
273 aa  113  3e-24  Methylobacterium populi BJ001  Bacteria  normal  0.132759  normal  0.452833 
 
 
-
 
NC_011004  Rpal_4641  binding-protein-dependent transport systems inner membrane component  29.24 
 
 
277 aa  113  3e-24  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.750363  n/a   
 
 
-
 
NC_008786  Veis_1108  binding-protein-dependent transport systems inner membrane component  30.25 
 
 
255 aa  113  3e-24  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.135552 
 
 
-
 
NC_013517  Sterm_2064  binding-protein-dependent transport systems inner membrane component  27.03 
 
 
254 aa  112  4.0000000000000004e-24  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.00112586  n/a   
 
 
-
 
NC_009664  Krad_3112  binding-protein-dependent transport systems inner membrane component  30.98 
 
 
253 aa  112  4.0000000000000004e-24  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0371548 
 
 
-
 
NC_014151  Cfla_3017  binding-protein-dependent transport systems inner membrane component  30.74 
 
 
253 aa  112  6e-24  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.946292  normal 
 
 
-
 
NC_014212  Mesil_0817  ABC transporter related protein  31.16 
 
 
492 aa  112  7.000000000000001e-24  Meiothermus silvanus DSM 9946  Bacteria  normal  0.309085  normal  0.730271 
 
 
-
 
NC_013093  Amir_4887  binding-protein-dependent transport systems inner membrane component  28.86 
 
 
267 aa  112  7.000000000000001e-24  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3419  binding-protein-dependent transport systems inner membrane component  30 
 
 
258 aa  112  8.000000000000001e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.121812  n/a   
 
 
-
 
NC_012791  Vapar_4760  binding-protein-dependent transport systems inner membrane component  27.62 
 
 
267 aa  111  9e-24  Variovorax paradoxus S110  Bacteria  normal  0.318809  n/a   
 
 
-
 
NC_009636  Smed_3150  binding-protein-dependent transport systems inner membrane component  32.41 
 
 
273 aa  110  2.0000000000000002e-23  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_1832  binding-protein-dependent transport systems inner membrane component  29.3 
 
 
274 aa  110  2.0000000000000002e-23  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.146122 
 
 
-
 
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