More than 300 homologs were found in PanDaTox collection
for query gene Rmet_0394 on replicon NC_007973
Organism: Cupriavidus metallidurans CH34



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007973  Rmet_0394  binding-protein-dependent transport systems inner membrane component  100 
 
 
259 aa  512  1e-144  Cupriavidus metallidurans CH34  Bacteria  normal  hitchhiker  0.00657833 
 
 
-
 
NC_012791  Vapar_3961  binding-protein-dependent transport systems inner membrane component  77.2 
 
 
256 aa  391  1e-108  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_1140  binding-protein-dependent transport systems inner membrane component  77.29 
 
 
255 aa  389  1e-107  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_1095  binding-protein-dependent transport systems inner membrane component  74.1 
 
 
255 aa  384  1e-106  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008752  Aave_1091  binding-protein-dependent transport systems inner membrane component  75.2 
 
 
258 aa  384  1e-106  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0347556  normal 
 
 
-
 
NC_008786  Veis_2127  binding-protein-dependent transport systems inner membrane component  71.71 
 
 
255 aa  373  1e-102  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.427162 
 
 
-
 
NC_013946  Mrub_1393  binding-protein-dependent transport systems inner membrane component  54.31 
 
 
254 aa  270  2e-71  Meiothermus ruber DSM 1279  Bacteria  normal  0.302994  normal  0.157809 
 
 
-
 
NC_009720  Xaut_3758  binding-protein-dependent transport systems inner membrane component  52.05 
 
 
256 aa  263  2e-69  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_3606  binding-protein-dependent transport systems inner membrane component  52.87 
 
 
257 aa  258  9e-68  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.071611 
 
 
-
 
NC_007493  RSP_0942  ABC transporter, inner membrane subunit  40.43 
 
 
254 aa  177  2e-43  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2601  binding-protein-dependent transport systems inner membrane component  40.43 
 
 
254 aa  176  2e-43  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_2973  binding-protein-dependent transport systems inner membrane component  40.43 
 
 
254 aa  176  2e-43  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.107448 
 
 
-
 
NC_012791  Vapar_1862  binding-protein-dependent transport systems inner membrane component  36.73 
 
 
257 aa  170  2e-41  Variovorax paradoxus S110  Bacteria  normal  0.116723  n/a   
 
 
-
 
NC_009952  Dshi_1939  putative ABC transporter permease protein  42.55 
 
 
273 aa  169  3e-41  Dinoroseobacter shibae DFL 12  Bacteria  normal  hitchhiker  0.0000752264 
 
 
-
 
NC_008786  Veis_0620  binding-protein-dependent transport systems inner membrane component  36.53 
 
 
254 aa  165  5e-40  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.63161  normal 
 
 
-
 
NC_013739  Cwoe_4254  binding-protein-dependent transport systems inner membrane component  34.44 
 
 
283 aa  154  1e-36  Conexibacter woesei DSM 14684  Bacteria  normal  0.0441349  normal  0.902161 
 
 
-
 
NC_012792  Vapar_6052  binding-protein-dependent transport systems inner membrane component  36.68 
 
 
274 aa  153  2.9999999999999998e-36  Variovorax paradoxus S110  Bacteria  normal  0.0454164  n/a   
 
 
-
 
NC_011988  Avi_5406  ABC transporter membrane spanning protein  35.32 
 
 
251 aa  150  1e-35  Agrobacterium vitis S4  Bacteria  normal  0.408693  n/a   
 
 
-
 
NC_011658  BCAH187_A0881  putative ABC transporter, permease protein  34.8 
 
 
251 aa  150  3e-35  Bacillus cereus AH187  Bacteria  hitchhiker  0.00328051  n/a   
 
 
-
 
NC_011772  BCG9842_B4547  putative ABC transporter, permease protein  34 
 
 
251 aa  148  7e-35  Bacillus cereus G9842  Bacteria  normal  0.113137  normal  0.441246 
 
 
-
 
NC_005945  BAS0693  ABC transporter permease  34.14 
 
 
250 aa  147  1.0000000000000001e-34  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0637  ABC transporter, permease  34.14 
 
 
250 aa  147  1.0000000000000001e-34  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00537874  n/a   
 
 
-
 
NC_006274  BCZK0637  ABC transporter, permease  34.14 
 
 
250 aa  147  1.0000000000000001e-34  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0804  putative ABC transporter, permease protein  34.14 
 
 
250 aa  147  1.0000000000000001e-34  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.22036e-46 
 
 
-
 
NC_007530  GBAA_0727  ABC transporter permease  34.14 
 
 
250 aa  147  1.0000000000000001e-34  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0363276  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0643  binding-protein-dependent transport systems inner membrane component  34.8 
 
 
251 aa  148  1.0000000000000001e-34  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0797  ABC transporter, permease protein, putative  34 
 
 
250 aa  147  2.0000000000000003e-34  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1221  binding-protein-dependent transport systems inner membrane component  32.92 
 
 
246 aa  146  3e-34  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011725  BCB4264_A0784  putative ABC transporter, permease protein  32.4 
 
 
250 aa  145  6e-34  Bacillus cereus B4264  Bacteria  normal  0.605831  n/a   
 
 
-
 
NC_007778  RPB_3118  binding-protein dependent transport system inner membrane protein  34.96 
 
 
284 aa  145  7.0000000000000006e-34  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_2985  binding-protein-dependent transport systems inner membrane component  31.49 
 
 
273 aa  142  6e-33  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0614  binding-protein-dependent transport systems inner membrane component  31.2 
 
 
250 aa  142  8e-33  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_0620  binding-protein-dependent transport systems inner membrane component  35.62 
 
 
258 aa  141  9.999999999999999e-33  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2703  binding-protein-dependent transport systems inner membrane component  31.85 
 
 
263 aa  140  1.9999999999999998e-32  Marinomonas sp. MWYL1  Bacteria  normal  0.88688  normal 
 
 
-
 
NC_009012  Cthe_2116  binding-protein-dependent transport systems inner membrane component  31.2 
 
 
253 aa  140  1.9999999999999998e-32  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_7629  putative ABC transporter permease protein  33.19 
 
 
282 aa  136  3.0000000000000003e-31  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.262472  normal  0.441686 
 
 
-
 
NC_010001  Cphy_0802  binding-protein-dependent transport systems inner membrane component  31.3 
 
 
274 aa  136  4e-31  Clostridium phytofermentans ISDg  Bacteria  normal  0.240571  n/a   
 
 
-
 
NC_009253  Dred_3205  binding-protein-dependent transport systems inner membrane component  30.83 
 
 
265 aa  135  8e-31  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.000457845  n/a   
 
 
-
 
NC_009921  Franean1_3131  binding-protein-dependent transport systems inner membrane component  30.57 
 
 
281 aa  135  9e-31  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_3099  binding-protein dependent transport system inner membrane protein  29.36 
 
 
261 aa  134  9.999999999999999e-31  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.578785 
 
 
-
 
NC_007509  Bcep18194_C7650  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  34.63 
 
 
247 aa  132  5e-30  Burkholderia sp. 383  Bacteria  normal  0.621765  normal 
 
 
-
 
NC_009485  BBta_1169  putative ABC transporter permease protein  31.58 
 
 
279 aa  132  5e-30  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_13670  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  30.2 
 
 
249 aa  130  2.0000000000000002e-29  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0770  binding-protein-dependent transport systems inner membrane component  28.57 
 
 
273 aa  130  2.0000000000000002e-29  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_3093  binding-protein dependent transport system inner membrane protein  30.84 
 
 
259 aa  129  6e-29  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.942666 
 
 
-
 
NC_009669  Oant_4580  binding-protein-dependent transport systems inner membrane component  31.1 
 
 
257 aa  128  1.0000000000000001e-28  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_0814  binding-protein-dependent transport systems inner membrane component  29.06 
 
 
270 aa  127  3e-28  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_3877  binding-protein-dependent transport systems inner membrane component  35.29 
 
 
282 aa  126  3e-28  Salinispora tropica CNB-440  Bacteria  normal  0.901388  normal 
 
 
-
 
NC_007802  Jann_3753  binding-protein-dependent transport systems inner membrane component  29.87 
 
 
268 aa  125  5e-28  Jannaschia sp. CCS1  Bacteria  normal  0.333865  normal 
 
 
-
 
NC_010320  Teth514_2295  binding-protein-dependent transport systems inner membrane component  28.35 
 
 
272 aa  125  7e-28  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_0891  binding-protein-dependent transport systems inner membrane component  29.89 
 
 
268 aa  125  8.000000000000001e-28  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.223421 
 
 
-
 
NC_010681  Bphyt_1488  binding-protein-dependent transport systems inner membrane component  32.03 
 
 
247 aa  125  8.000000000000001e-28  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_005945  BAS0367  ABC transporter permease  26.46 
 
 
265 aa  124  1e-27  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0357  ABC transporter, permease  26.46 
 
 
265 aa  124  1e-27  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0354  ABC transporter, permease  26.07 
 
 
265 aa  124  1e-27  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0521  binding-protein-dependent transport systems inner membrane component  31.79 
 
 
292 aa  124  1e-27  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.367955 
 
 
-
 
NC_013739  Cwoe_3810  binding-protein-dependent transport systems inner membrane component  27.75 
 
 
258 aa  124  1e-27  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.42897 
 
 
-
 
NC_003909  BCE_0491  ABC transporter, permease protein, putative  26.95 
 
 
257 aa  124  2e-27  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0381  ABC transporter permease  26.56 
 
 
257 aa  124  2e-27  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0424  putative ABC transporter, permease protein  26.56 
 
 
257 aa  124  2e-27  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011658  BCAH187_A0493  putative ABC transporter, permease protein  26.95 
 
 
257 aa  124  2e-27  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0446  putative ABC transporter, permease protein  26.17 
 
 
257 aa  122  5e-27  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_2588  binding-protein-dependent transport systems inner membrane component  30.22 
 
 
267 aa  122  6e-27  Pseudomonas putida W619  Bacteria  normal  normal  0.417353 
 
 
-
 
NC_008254  Meso_2962  binding-protein-dependent transport systems inner membrane component  34.18 
 
 
280 aa  122  7e-27  Chelativorans sp. BNC1  Bacteria  normal  0.0794658  n/a   
 
 
-
 
NC_009253  Dred_1834  binding-protein-dependent transport systems inner membrane component  29.24 
 
 
268 aa  121  9.999999999999999e-27  Desulfotomaculum reducens MI-1  Bacteria  normal  0.101401  n/a   
 
 
-
 
NC_010172  Mext_1719  binding-protein-dependent transport systems inner membrane component  30.74 
 
 
264 aa  121  9.999999999999999e-27  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_013457  VEA_000865  hydroxymethylpyrimidine ABC transporter transmembrane component  28.69 
 
 
266 aa  120  1.9999999999999998e-26  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_06840  ABC-type nitrate/sulfonate/bicarbonate transport system permease component  27.8 
 
 
266 aa  120  1.9999999999999998e-26  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013739  Cwoe_5602  binding-protein-dependent transport systems inner membrane component  32.17 
 
 
263 aa  119  3e-26  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_2038  binding-protein-dependent transport systems inner membrane component  30.74 
 
 
264 aa  120  3e-26  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.697058  normal  0.743835 
 
 
-
 
NC_010623  Bphy_3181  binding-protein-dependent transport systems inner membrane component  30.12 
 
 
277 aa  120  3e-26  Burkholderia phymatum STM815  Bacteria  normal  0.0283642  normal 
 
 
-
 
NC_009767  Rcas_0666  binding-protein-dependent transport systems inner membrane component  32.65 
 
 
272 aa  120  3e-26  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_3210  ABC transporter, permease protein  29.33 
 
 
267 aa  119  4.9999999999999996e-26  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_0957  binding-protein-dependent transport systems inner membrane component  31.47 
 
 
274 aa  119  4.9999999999999996e-26  Burkholderia phymatum STM815  Bacteria  normal  0.199065  normal 
 
 
-
 
NC_014150  Bmur_2553  binding-protein-dependent transport systems inner membrane component  31.89 
 
 
275 aa  119  4.9999999999999996e-26  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4878  putative ABC transporter, permease protein  26.1 
 
 
255 aa  119  6e-26  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_1422  binding-protein-dependent transport systems inner membrane component  29.92 
 
 
273 aa  119  6e-26  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1261  binding-protein-dependent transport systems inner membrane component  29.92 
 
 
273 aa  119  6e-26  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.306936 
 
 
-
 
NC_011830  Dhaf_0877  binding-protein-dependent transport systems inner membrane component  26.19 
 
 
260 aa  118  7.999999999999999e-26  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.00000000112184  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0362  binding-protein-dependent transport systems inner membrane component  26.36 
 
 
255 aa  117  9.999999999999999e-26  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_2296  binding-protein-dependent transport systems inner membrane component  32.91 
 
 
250 aa  117  1.9999999999999998e-25  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A2355  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  31.47 
 
 
274 aa  117  1.9999999999999998e-25  Burkholderia xenovorans LB400  Bacteria  normal  0.214574  normal  0.0382396 
 
 
-
 
NC_011894  Mnod_3419  binding-protein-dependent transport systems inner membrane component  31.33 
 
 
258 aa  117  1.9999999999999998e-25  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.121812  n/a   
 
 
-
 
NC_009523  RoseRS_0669  binding-protein-dependent transport systems inner membrane component  31.15 
 
 
272 aa  117  3e-25  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0848141 
 
 
-
 
NC_014150  Bmur_0154  binding-protein-dependent transport systems inner membrane component  26.12 
 
 
264 aa  116  3e-25  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_2064  binding-protein-dependent transport systems inner membrane component  26.34 
 
 
254 aa  116  3e-25  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.00112586  n/a   
 
 
-
 
NC_013521  Sked_02100  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  31.19 
 
 
308 aa  116  5e-25  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_4522  binding-protein-dependent transport systems inner membrane component  31.39 
 
 
329 aa  115  6e-25  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_1095  binding-protein-dependent transport systems inner membrane component  28.74 
 
 
264 aa  115  6e-25  Methylobacterium populi BJ001  Bacteria  normal  0.0240883  normal  0.166534 
 
 
-
 
NC_009953  Sare_4268  binding-protein-dependent transport systems inner membrane component  33.64 
 
 
282 aa  115  6.9999999999999995e-25  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0113678 
 
 
-
 
NC_008148  Rxyl_2084  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
260 aa  114  1.0000000000000001e-24  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.566245  n/a   
 
 
-
 
NC_010725  Mpop_1211  binding-protein-dependent transport systems inner membrane component  28.74 
 
 
273 aa  114  1.0000000000000001e-24  Methylobacterium populi BJ001  Bacteria  normal  0.132759  normal  0.452833 
 
 
-
 
NC_013093  Amir_4887  binding-protein-dependent transport systems inner membrane component  29.83 
 
 
267 aa  114  1.0000000000000001e-24  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013721  HMPREF0424_0654  ABC transporter, permease protein  30.47 
 
 
263 aa  114  2.0000000000000002e-24  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_010681  Bphyt_1832  binding-protein-dependent transport systems inner membrane component  30.94 
 
 
274 aa  114  2.0000000000000002e-24  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.146122 
 
 
-
 
NC_003295  RSc1200  transmembrane permease ABC transporter protein  33.33 
 
 
263 aa  113  4.0000000000000004e-24  Ralstonia solanacearum GMI1000  Bacteria  normal  0.441856  normal  0.826922 
 
 
-
 
NC_013093  Amir_2627  binding-protein-dependent transport systems inner membrane component  29.63 
 
 
288 aa  112  4.0000000000000004e-24  Actinosynnema mirum DSM 43827  Bacteria  normal  0.752734  n/a   
 
 
-
 
NC_009667  Oant_0278  binding-protein-dependent transport systems inner membrane component  31.05 
 
 
258 aa  112  7.000000000000001e-24  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_013743  Htur_0669  binding-protein-dependent transport systems inner membrane component  33.67 
 
 
258 aa  112  7.000000000000001e-24  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_009720  Xaut_4051  binding-protein-dependent transport systems inner membrane component  28.78 
 
 
273 aa  112  7.000000000000001e-24  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.395379 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>