More than 300 homologs were found in PanDaTox collection
for query gene Amir_4887 on replicon NC_013093
Organism: Actinosynnema mirum DSM 43827



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013093  Amir_4887  binding-protein-dependent transport systems inner membrane component  100 
 
 
267 aa  515  1.0000000000000001e-145  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1221  binding-protein-dependent transport systems inner membrane component  35.98 
 
 
246 aa  140  1.9999999999999998e-32  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011830  Dhaf_0877  binding-protein-dependent transport systems inner membrane component  34.6 
 
 
260 aa  138  7.999999999999999e-32  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.00000000112184  n/a   
 
 
-
 
NC_011894  Mnod_2985  binding-protein-dependent transport systems inner membrane component  35.93 
 
 
273 aa  137  2e-31  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3099  binding-protein dependent transport system inner membrane protein  32.19 
 
 
261 aa  135  6.0000000000000005e-31  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.578785 
 
 
-
 
NC_012791  Vapar_1862  binding-protein-dependent transport systems inner membrane component  30.9 
 
 
257 aa  134  9.999999999999999e-31  Variovorax paradoxus S110  Bacteria  normal  0.116723  n/a   
 
 
-
 
NC_013093  Amir_4889  binding-protein-dependent transport systems inner membrane component  34.8 
 
 
258 aa  134  9.999999999999999e-31  Actinosynnema mirum DSM 43827  Bacteria  normal  0.90454  n/a   
 
 
-
 
NC_013223  Dret_2296  binding-protein-dependent transport systems inner membrane component  38.15 
 
 
250 aa  134  1.9999999999999998e-30  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0770  binding-protein-dependent transport systems inner membrane component  35.71 
 
 
273 aa  134  1.9999999999999998e-30  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A0446  putative ABC transporter, permease protein  28.69 
 
 
257 aa  132  7.999999999999999e-30  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0367  ABC transporter permease  29.11 
 
 
265 aa  132  7.999999999999999e-30  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0357  ABC transporter, permease  29.11 
 
 
265 aa  132  7.999999999999999e-30  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0362  binding-protein-dependent transport systems inner membrane component  28.28 
 
 
255 aa  132  7.999999999999999e-30  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0491  ABC transporter, permease protein, putative  29.11 
 
 
257 aa  131  1.0000000000000001e-29  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4878  putative ABC transporter, permease protein  28.69 
 
 
255 aa  131  1.0000000000000001e-29  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_007530  GBAA_0381  ABC transporter permease  29.11 
 
 
257 aa  131  1.0000000000000001e-29  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0424  putative ABC transporter, permease protein  29.11 
 
 
257 aa  131  1.0000000000000001e-29  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_013525  Tter_0403  binding-protein-dependent transport systems inner membrane component  29.84 
 
 
271 aa  130  2.0000000000000002e-29  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011658  BCAH187_A0493  putative ABC transporter, permease protein  28.69 
 
 
257 aa  130  2.0000000000000002e-29  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_1169  putative ABC transporter permease protein  35.12 
 
 
279 aa  129  4.0000000000000003e-29  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_006274  BCZK0354  ABC transporter, permease  28.69 
 
 
265 aa  129  5.0000000000000004e-29  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_0620  binding-protein-dependent transport systems inner membrane component  30.57 
 
 
254 aa  129  6e-29  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.63161  normal 
 
 
-
 
NC_009012  Cthe_2116  binding-protein-dependent transport systems inner membrane component  29.79 
 
 
253 aa  129  6e-29  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_1933  binding-protein-dependent transport systems inner membrane component  37.25 
 
 
255 aa  127  1.0000000000000001e-28  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.323499  n/a   
 
 
-
 
NC_009674  Bcer98_0370  binding-protein-dependent transport systems inner membrane component  27.64 
 
 
256 aa  127  2.0000000000000002e-28  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_1393  binding-protein-dependent transport systems inner membrane component  31.74 
 
 
254 aa  127  2.0000000000000002e-28  Meiothermus ruber DSM 1279  Bacteria  normal  0.302994  normal  0.157809 
 
 
-
 
NC_009674  Bcer98_1998  binding-protein-dependent transport systems inner membrane component  30.83 
 
 
283 aa  127  3e-28  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.894639  n/a   
 
 
-
 
NC_013165  Shel_13670  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  30.49 
 
 
249 aa  126  3e-28  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2734  binding-protein-dependent transport systems inner membrane component  32.3 
 
 
267 aa  127  3e-28  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.549296  normal 
 
 
-
 
NC_009654  Mmwyl1_2703  binding-protein-dependent transport systems inner membrane component  28.19 
 
 
263 aa  126  4.0000000000000003e-28  Marinomonas sp. MWYL1  Bacteria  normal  0.88688  normal 
 
 
-
 
NC_013235  Namu_1668  binding-protein-dependent transport systems inner membrane component  33.46 
 
 
288 aa  126  4.0000000000000003e-28  Nakamurella multipartita DSM 44233  Bacteria  normal  0.173855  normal  0.365472 
 
 
-
 
NC_009379  Pnuc_1181  binding-protein-dependent transport systems inner membrane component  27.08 
 
 
271 aa  126  4.0000000000000003e-28  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_3131  binding-protein-dependent transport systems inner membrane component  30.04 
 
 
281 aa  125  5e-28  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3934  binding-protein-dependent transport systems inner membrane component  33.6 
 
 
278 aa  125  5e-28  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.421742  normal 
 
 
-
 
NC_009656  PSPA7_1679  ABC transporter permease  37.18 
 
 
274 aa  125  6e-28  Pseudomonas aeruginosa PA7  Bacteria  normal  0.451747  n/a   
 
 
-
 
NC_009485  BBta_7629  putative ABC transporter permease protein  33.96 
 
 
282 aa  125  6e-28  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.262472  normal  0.441686 
 
 
-
 
NC_009669  Oant_4580  binding-protein-dependent transport systems inner membrane component  32.33 
 
 
257 aa  125  7e-28  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_11490  binding-protein-dependent transport systems inner membrane component  27.41 
 
 
278 aa  125  7e-28  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000000965537  n/a   
 
 
-
 
NC_009253  Dred_3205  binding-protein-dependent transport systems inner membrane component  33.76 
 
 
265 aa  125  8.000000000000001e-28  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.000457845  n/a   
 
 
-
 
NC_007643  Rru_A1643  binding-protein dependent transport system inner membrane protein  39.53 
 
 
261 aa  125  9e-28  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0353041  n/a   
 
 
-
 
NC_009952  Dshi_2545  binding-protein-dependent transport system protein  28.31 
 
 
287 aa  124  1e-27  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.240068  normal  0.521676 
 
 
-
 
NC_007778  RPB_3093  binding-protein dependent transport system inner membrane protein  33.47 
 
 
259 aa  123  2e-27  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.942666 
 
 
-
 
NC_013739  Cwoe_3810  binding-protein-dependent transport systems inner membrane component  30.34 
 
 
258 aa  124  2e-27  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.42897 
 
 
-
 
NC_008463  PA14_19510  ABC transporter permease  36.44 
 
 
274 aa  124  2e-27  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0231  binding-protein-dependent transport systems inner membrane component  29.96 
 
 
271 aa  124  2e-27  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009784  VIBHAR_06840  ABC-type nitrate/sulfonate/bicarbonate transport system permease component  30.19 
 
 
266 aa  123  4e-27  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_012792  Vapar_6052  binding-protein-dependent transport systems inner membrane component  31.98 
 
 
274 aa  122  4e-27  Variovorax paradoxus S110  Bacteria  normal  0.0454164  n/a   
 
 
-
 
NC_009953  Sare_4268  binding-protein-dependent transport systems inner membrane component  36.4 
 
 
282 aa  122  5e-27  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0113678 
 
 
-
 
NC_009428  Rsph17025_0765  binding-protein-dependent transport systems inner membrane component  33.07 
 
 
265 aa  122  6e-27  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_013203  Apar_0391  binding-protein-dependent transport systems inner membrane component  31.3 
 
 
257 aa  122  8e-27  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_3877  binding-protein-dependent transport systems inner membrane component  35.52 
 
 
282 aa  122  8e-27  Salinispora tropica CNB-440  Bacteria  normal  0.901388  normal 
 
 
-
 
NC_007509  Bcep18194_C7650  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  34.15 
 
 
247 aa  122  9e-27  Burkholderia sp. 383  Bacteria  normal  0.621765  normal 
 
 
-
 
NC_009523  RoseRS_2763  binding-protein-dependent transport systems inner membrane component  33.64 
 
 
275 aa  122  9e-27  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_1044  binding-protein-dependent transport systems inner membrane component  32.49 
 
 
263 aa  121  9e-27  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_1136  binding-protein-dependent transport systems inner membrane component  32.49 
 
 
263 aa  121  9.999999999999999e-27  Ralstonia pickettii 12D  Bacteria  normal  0.629035  normal  0.968824 
 
 
-
 
NC_008148  Rxyl_2084  binding-protein-dependent transport systems inner membrane component  37.5 
 
 
260 aa  121  9.999999999999999e-27  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.566245  n/a   
 
 
-
 
NC_013739  Cwoe_4254  binding-protein-dependent transport systems inner membrane component  30.92 
 
 
283 aa  121  9.999999999999999e-27  Conexibacter woesei DSM 14684  Bacteria  normal  0.0441349  normal  0.902161 
 
 
-
 
NC_011004  Rpal_2777  binding-protein-dependent transport systems inner membrane component  29.88 
 
 
292 aa  120  1.9999999999999998e-26  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_3124  binding-protein-dependent transport systems inner membrane component  37.8 
 
 
255 aa  120  3e-26  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_3181  binding-protein-dependent transport systems inner membrane component  30.23 
 
 
277 aa  119  3.9999999999999996e-26  Burkholderia phymatum STM815  Bacteria  normal  0.0283642  normal 
 
 
-
 
NC_008254  Meso_0814  binding-protein-dependent transport systems inner membrane component  29.18 
 
 
270 aa  119  3.9999999999999996e-26  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009524  PsycPRwf_1445  binding-protein-dependent transport systems inner membrane component  30.4 
 
 
259 aa  119  3.9999999999999996e-26  Psychrobacter sp. PRwf-1  Bacteria  normal  normal  0.318112 
 
 
-
 
NC_012791  Vapar_2336  binding-protein-dependent transport systems inner membrane component  30.43 
 
 
277 aa  119  4.9999999999999996e-26  Variovorax paradoxus S110  Bacteria  normal  0.544063  n/a   
 
 
-
 
NC_007778  RPB_3118  binding-protein dependent transport system inner membrane protein  30.87 
 
 
284 aa  119  6e-26  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011988  Avi_5406  ABC transporter membrane spanning protein  30.71 
 
 
251 aa  119  7e-26  Agrobacterium vitis S4  Bacteria  normal  0.408693  n/a   
 
 
-
 
NC_013517  Sterm_2064  binding-protein-dependent transport systems inner membrane component  27.93 
 
 
254 aa  118  9e-26  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.00112586  n/a   
 
 
-
 
NC_005945  BAS2712  sulfonate ABC transporter permease  31.44 
 
 
282 aa  118  9.999999999999999e-26  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_000865  hydroxymethylpyrimidine ABC transporter transmembrane component  31.22 
 
 
266 aa  118  9.999999999999999e-26  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_2920  sulfonate ABC transporter permease protein  31.44 
 
 
282 aa  118  9.999999999999999e-26  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3438  binding-protein-dependent transport systems inner membrane component  33.73 
 
 
301 aa  118  9.999999999999999e-26  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_3645  binding-protein-dependent transport systems inner membrane component  33.47 
 
 
268 aa  117  1.9999999999999998e-25  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_1488  binding-protein-dependent transport systems inner membrane component  34.55 
 
 
247 aa  117  1.9999999999999998e-25  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007953  Bxe_C0981  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  30.64 
 
 
279 aa  117  1.9999999999999998e-25  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_014148  Plim_2867  binding-protein-dependent transport systems inner membrane component  30.71 
 
 
277 aa  117  1.9999999999999998e-25  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc1200  transmembrane permease ABC transporter protein  31.65 
 
 
263 aa  117  3e-25  Ralstonia solanacearum GMI1000  Bacteria  normal  0.441856  normal  0.826922 
 
 
-
 
NC_009667  Oant_0278  binding-protein-dependent transport systems inner membrane component  31.96 
 
 
258 aa  116  3.9999999999999997e-25  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_3036  binding-protein-dependent transport systems inner membrane component  29.73 
 
 
266 aa  115  5e-25  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_3753  binding-protein-dependent transport systems inner membrane component  29.41 
 
 
268 aa  115  6.9999999999999995e-25  Jannaschia sp. CCS1  Bacteria  normal  0.333865  normal 
 
 
-
 
NC_013515  Smon_0476  binding-protein-dependent transport systems inner membrane component  30 
 
 
249 aa  115  7.999999999999999e-25  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_010581  Bind_0552  binding-protein-dependent transport systems inner membrane component  32.88 
 
 
286 aa  115  8.999999999999998e-25  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.973794  normal 
 
 
-
 
NC_013521  Sked_19350  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  34.52 
 
 
293 aa  115  8.999999999999998e-25  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.449157  normal  0.837307 
 
 
-
 
NC_008786  Veis_2127  binding-protein-dependent transport systems inner membrane component  28.76 
 
 
255 aa  115  8.999999999999998e-25  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.427162 
 
 
-
 
NC_013739  Cwoe_1643  binding-protein-dependent transport systems inner membrane component  35.98 
 
 
259 aa  115  1.0000000000000001e-24  Conexibacter woesei DSM 14684  Bacteria  normal  0.805205  normal  0.60128 
 
 
-
 
NC_010002  Daci_4527  binding-protein-dependent transport systems inner membrane component  39.23 
 
 
253 aa  114  1.0000000000000001e-24  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR0211  ABC transporter, permease protein  29.88 
 
 
258 aa  114  2.0000000000000002e-24  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_3269  binding-protein-dependent transport systems inner membrane component  37.68 
 
 
253 aa  114  2.0000000000000002e-24  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.283078  normal 
 
 
-
 
NC_007952  Bxe_B2638  ABC sulfonate transporter, inner membrane subunit  30.21 
 
 
279 aa  114  2.0000000000000002e-24  Burkholderia xenovorans LB400  Bacteria  normal  0.0950643  hitchhiker  0.0000361652 
 
 
-
 
NC_012793  GWCH70_2621  binding-protein-dependent transport systems inner membrane component  29.18 
 
 
281 aa  114  2.0000000000000002e-24  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.00000218671  n/a   
 
 
-
 
NC_007973  Rmet_0394  binding-protein-dependent transport systems inner membrane component  29.69 
 
 
259 aa  114  2.0000000000000002e-24  Cupriavidus metallidurans CH34  Bacteria  normal  hitchhiker  0.00657833 
 
 
-
 
NC_008043  TM1040_3658  binding-protein-dependent transport systems inner membrane component  35.41 
 
 
245 aa  114  2.0000000000000002e-24  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009505  BOV_0202  ABC transporter, permease protein  29.88 
 
 
258 aa  114  2.0000000000000002e-24  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0435  binding-protein-dependent transport systems inner membrane component  29.22 
 
 
250 aa  113  3e-24  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_2389  binding-protein-dependent transport systems inner membrane component  33.18 
 
 
275 aa  113  4.0000000000000004e-24  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_21600  aliphatic sulfonates ABC transporter, inner membrane component  29.18 
 
 
284 aa  112  4.0000000000000004e-24  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_0620  binding-protein-dependent transport systems inner membrane component  29.92 
 
 
258 aa  112  5e-24  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3419  binding-protein-dependent transport systems inner membrane component  28.92 
 
 
258 aa  112  5e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.121812  n/a   
 
 
-
 
NC_009708  YpsIP31758_0355  putative ABC aliphatic sulfonates transporter, permease subunit  30.89 
 
 
264 aa  112  6e-24  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_008688  Pden_4882  binding-protein-dependent transport systems inner membrane component  31.96 
 
 
259 aa  112  6e-24  Paracoccus denitrificans PD1222  Bacteria  normal  0.947992  normal 
 
 
-
 
NC_010465  YPK_0423  binding-protein-dependent transport systems inner membrane component  30.89 
 
 
264 aa  112  6e-24  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_1140  binding-protein-dependent transport systems inner membrane component  28.86 
 
 
255 aa  112  7.000000000000001e-24  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
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