More than 300 homologs were found in PanDaTox collection
for query gene Dshi_2545 on replicon NC_009952
Organism: Dinoroseobacter shibae DFL 12



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009952  Dshi_2545  binding-protein-dependent transport system protein  100 
 
 
287 aa  570  1.0000000000000001e-162  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.240068  normal  0.521676 
 
 
-
 
NC_009050  Rsph17029_3904  binding-protein-dependent transport systems inner membrane component  70.55 
 
 
281 aa  368  1e-101  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007494  RSP_3166  ABC transporter, inner membrane subunit  70.55 
 
 
281 aa  366  1e-100  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3099  binding-protein dependent transport system inner membrane protein  35.83 
 
 
261 aa  169  6e-41  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.578785 
 
 
-
 
NC_009921  Franean1_3131  binding-protein-dependent transport systems inner membrane component  34.71 
 
 
281 aa  159  5e-38  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_0620  binding-protein-dependent transport systems inner membrane component  36.77 
 
 
254 aa  150  2e-35  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.63161  normal 
 
 
-
 
NC_012792  Vapar_6052  binding-protein-dependent transport systems inner membrane component  36.86 
 
 
274 aa  149  4e-35  Variovorax paradoxus S110  Bacteria  normal  0.0454164  n/a   
 
 
-
 
NC_012791  Vapar_0620  binding-protein-dependent transport systems inner membrane component  36.67 
 
 
258 aa  147  1.0000000000000001e-34  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_1862  binding-protein-dependent transport systems inner membrane component  33.9 
 
 
257 aa  147  2.0000000000000003e-34  Variovorax paradoxus S110  Bacteria  normal  0.116723  n/a   
 
 
-
 
NC_010511  M446_0770  binding-protein-dependent transport systems inner membrane component  37.44 
 
 
273 aa  146  4.0000000000000006e-34  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_2985  binding-protein-dependent transport systems inner membrane component  34.55 
 
 
273 aa  143  3e-33  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_7629  putative ABC transporter permease protein  35.54 
 
 
282 aa  142  9e-33  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.262472  normal  0.441686 
 
 
-
 
NC_010623  Bphy_3181  binding-protein-dependent transport systems inner membrane component  36.44 
 
 
277 aa  142  9e-33  Burkholderia phymatum STM815  Bacteria  normal  0.0283642  normal 
 
 
-
 
NC_009485  BBta_1169  putative ABC transporter permease protein  31.79 
 
 
279 aa  141  1.9999999999999998e-32  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009669  Oant_4580  binding-protein-dependent transport systems inner membrane component  34.96 
 
 
257 aa  137  1e-31  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_2295  binding-protein-dependent transport systems inner membrane component  30.71 
 
 
272 aa  137  2e-31  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1221  binding-protein-dependent transport systems inner membrane component  34.78 
 
 
246 aa  135  6.0000000000000005e-31  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007778  RPB_3118  binding-protein dependent transport system inner membrane protein  37.88 
 
 
284 aa  135  7.000000000000001e-31  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_0891  binding-protein-dependent transport systems inner membrane component  31.73 
 
 
268 aa  132  5e-30  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.223421 
 
 
-
 
NC_007509  Bcep18194_C7650  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  38.62 
 
 
247 aa  132  7.999999999999999e-30  Burkholderia sp. 383  Bacteria  normal  0.621765  normal 
 
 
-
 
NC_011894  Mnod_3419  binding-protein-dependent transport systems inner membrane component  35.96 
 
 
258 aa  131  1.0000000000000001e-29  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.121812  n/a   
 
 
-
 
NC_013739  Cwoe_4254  binding-protein-dependent transport systems inner membrane component  35.5 
 
 
283 aa  131  1.0000000000000001e-29  Conexibacter woesei DSM 14684  Bacteria  normal  0.0441349  normal  0.902161 
 
 
-
 
NC_007778  RPB_3093  binding-protein dependent transport system inner membrane protein  33.61 
 
 
259 aa  129  5.0000000000000004e-29  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.942666 
 
 
-
 
NC_006274  BCZK0354  ABC transporter, permease  33.06 
 
 
265 aa  129  7.000000000000001e-29  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0491  ABC transporter, permease protein, putative  33.05 
 
 
257 aa  128  1.0000000000000001e-28  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0367  ABC transporter permease  33.06 
 
 
265 aa  128  1.0000000000000001e-28  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0357  ABC transporter, permease  33.06 
 
 
265 aa  128  1.0000000000000001e-28  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0381  ABC transporter permease  33.06 
 
 
257 aa  128  1.0000000000000001e-28  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_013515  Smon_0476  binding-protein-dependent transport systems inner membrane component  29.41 
 
 
249 aa  128  1.0000000000000001e-28  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_011773  BCAH820_0424  putative ABC transporter, permease protein  33.06 
 
 
257 aa  128  1.0000000000000001e-28  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011658  BCAH187_A0493  putative ABC transporter, permease protein  33.05 
 
 
257 aa  127  2.0000000000000002e-28  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_1488  binding-protein-dependent transport systems inner membrane component  37.31 
 
 
247 aa  127  3e-28  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009784  VIBHAR_06840  ABC-type nitrate/sulfonate/bicarbonate transport system permease component  29.23 
 
 
266 aa  126  5e-28  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011772  BCG9842_B4878  putative ABC transporter, permease protein  32.22 
 
 
255 aa  125  5e-28  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_0814  binding-protein-dependent transport systems inner membrane component  33.69 
 
 
270 aa  126  5e-28  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0797  ABC transporter, permease protein, putative  34.78 
 
 
250 aa  125  6e-28  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_1393  binding-protein-dependent transport systems inner membrane component  31.47 
 
 
254 aa  125  6e-28  Meiothermus ruber DSM 1279  Bacteria  normal  0.302994  normal  0.157809 
 
 
-
 
NC_010184  BcerKBAB4_0362  binding-protein-dependent transport systems inner membrane component  32.24 
 
 
255 aa  124  1e-27  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0881  putative ABC transporter, permease protein  34.78 
 
 
251 aa  124  2e-27  Bacillus cereus AH187  Bacteria  hitchhiker  0.00328051  n/a   
 
 
-
 
NC_013093  Amir_4887  binding-protein-dependent transport systems inner membrane component  28.31 
 
 
267 aa  124  2e-27  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4547  putative ABC transporter, permease protein  34.78 
 
 
251 aa  124  2e-27  Bacillus cereus G9842  Bacteria  normal  0.113137  normal  0.441246 
 
 
-
 
NC_013457  VEA_000865  hydroxymethylpyrimidine ABC transporter transmembrane component  29.23 
 
 
266 aa  123  3e-27  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0666  binding-protein-dependent transport systems inner membrane component  37.5 
 
 
272 aa  123  3e-27  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_006274  BCZK0637  ABC transporter, permease  33.91 
 
 
250 aa  122  5e-27  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0446  putative ABC transporter, permease protein  31.8 
 
 
257 aa  122  6e-27  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0693  ABC transporter permease  33.91 
 
 
250 aa  122  6e-27  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0727  ABC transporter permease  33.91 
 
 
250 aa  122  6e-27  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0363276  n/a   
 
 
-
 
NC_011773  BCAH820_0804  putative ABC transporter, permease protein  33.91 
 
 
250 aa  122  6e-27  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.22036e-46 
 
 
-
 
NC_005957  BT9727_0637  ABC transporter, permease  33.91 
 
 
250 aa  122  7e-27  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00537874  n/a   
 
 
-
 
NC_013739  Cwoe_1643  binding-protein-dependent transport systems inner membrane component  32.79 
 
 
259 aa  122  7e-27  Conexibacter woesei DSM 14684  Bacteria  normal  0.805205  normal  0.60128 
 
 
-
 
NC_009674  Bcer98_0370  binding-protein-dependent transport systems inner membrane component  32.24 
 
 
256 aa  122  8e-27  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_0669  binding-protein-dependent transport systems inner membrane component  37.24 
 
 
272 aa  122  8e-27  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0848141 
 
 
-
 
NC_011725  BCB4264_A0784  putative ABC transporter, permease protein  33.91 
 
 
250 aa  121  9.999999999999999e-27  Bacillus cereus B4264  Bacteria  normal  0.605831  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0643  binding-protein-dependent transport systems inner membrane component  34.08 
 
 
251 aa  122  9.999999999999999e-27  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_3116  binding-protein-dependent transport systems inner membrane component  38.83 
 
 
272 aa  122  9.999999999999999e-27  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.025765  normal 
 
 
-
 
NC_012791  Vapar_4760  binding-protein-dependent transport systems inner membrane component  32.02 
 
 
267 aa  121  1.9999999999999998e-26  Variovorax paradoxus S110  Bacteria  normal  0.318809  n/a   
 
 
-
 
NC_011830  Dhaf_0877  binding-protein-dependent transport systems inner membrane component  28.91 
 
 
260 aa  120  1.9999999999999998e-26  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.00000000112184  n/a   
 
 
-
 
NC_009654  Mmwyl1_2703  binding-protein-dependent transport systems inner membrane component  30.04 
 
 
263 aa  120  3e-26  Marinomonas sp. MWYL1  Bacteria  normal  0.88688  normal 
 
 
-
 
NC_009674  Bcer98_0614  binding-protein-dependent transport systems inner membrane component  35.94 
 
 
250 aa  120  3e-26  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2763  binding-protein-dependent transport systems inner membrane component  32.43 
 
 
275 aa  120  3e-26  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_2099  binding-protein-dependent transport systems inner membrane component  32.44 
 
 
306 aa  120  3.9999999999999996e-26  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_0259  binding-protein-dependent transport systems inner membrane component  32.61 
 
 
453 aa  120  3.9999999999999996e-26  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_4527  binding-protein-dependent transport systems inner membrane component  37.21 
 
 
253 aa  119  4.9999999999999996e-26  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_3205  binding-protein-dependent transport systems inner membrane component  30.54 
 
 
265 aa  119  4.9999999999999996e-26  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.000457845  n/a   
 
 
-
 
NC_010001  Cphy_1151  binding-protein-dependent transport systems inner membrane component  32.35 
 
 
254 aa  119  6e-26  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013203  Apar_0391  binding-protein-dependent transport systems inner membrane component  32.08 
 
 
257 aa  118  9.999999999999999e-26  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_3810  binding-protein-dependent transport systems inner membrane component  29.71 
 
 
258 aa  118  9.999999999999999e-26  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.42897 
 
 
-
 
NC_013721  HMPREF0424_0654  ABC transporter, permease protein  31.28 
 
 
263 aa  117  1.9999999999999998e-25  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_009012  Cthe_2116  binding-protein-dependent transport systems inner membrane component  29.71 
 
 
253 aa  117  1.9999999999999998e-25  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_3645  binding-protein-dependent transport systems inner membrane component  30.96 
 
 
268 aa  116  3.9999999999999997e-25  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_2281  binding-protein-dependent transport systems inner membrane component  31.65 
 
 
281 aa  115  8.999999999999998e-25  Frankia sp. EAN1pec  Bacteria  normal  0.695693  normal  0.331928 
 
 
-
 
NC_012880  Dd703_0037  binding-protein-dependent transport systems inner membrane component  31.8 
 
 
362 aa  114  1.0000000000000001e-24  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_2296  binding-protein-dependent transport systems inner membrane component  38.42 
 
 
250 aa  115  1.0000000000000001e-24  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_013743  Htur_0669  binding-protein-dependent transport systems inner membrane component  35.82 
 
 
258 aa  114  2.0000000000000002e-24  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_010501  PputW619_2588  binding-protein-dependent transport systems inner membrane component  31.97 
 
 
267 aa  114  2.0000000000000002e-24  Pseudomonas putida W619  Bacteria  normal  normal  0.417353 
 
 
-
 
NC_013235  Namu_1668  binding-protein-dependent transport systems inner membrane component  29.66 
 
 
288 aa  114  3e-24  Nakamurella multipartita DSM 44233  Bacteria  normal  0.173855  normal  0.365472 
 
 
-
 
NC_014148  Plim_2867  binding-protein-dependent transport systems inner membrane component  30.28 
 
 
277 aa  113  3e-24  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3788  binding-protein-dependent transport systems inner membrane component  32.77 
 
 
317 aa  113  3e-24  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0255815  normal 
 
 
-
 
NC_009636  Smed_2372  binding-protein-dependent transport systems inner membrane component  34.55 
 
 
289 aa  113  3e-24  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.239724 
 
 
-
 
NC_012793  GWCH70_2621  binding-protein-dependent transport systems inner membrane component  29.48 
 
 
281 aa  113  3e-24  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.00000218671  n/a   
 
 
-
 
NC_011899  Hore_11490  binding-protein-dependent transport systems inner membrane component  28.1 
 
 
278 aa  113  4.0000000000000004e-24  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000000965537  n/a   
 
 
-
 
NC_009767  Rcas_2389  binding-protein-dependent transport systems inner membrane component  31.98 
 
 
275 aa  113  4.0000000000000004e-24  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_1883  binding-protein-dependent transport systems inner membrane component  32.44 
 
 
322 aa  113  4.0000000000000004e-24  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.167871 
 
 
-
 
NC_013165  Shel_13670  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  30.51 
 
 
249 aa  113  4.0000000000000004e-24  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_3210  ABC transporter, permease protein  31.97 
 
 
267 aa  112  7.000000000000001e-24  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_4522  binding-protein-dependent transport systems inner membrane component  29.95 
 
 
329 aa  112  7.000000000000001e-24  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_1578  binding-protein-dependent transport systems inner membrane component  29.73 
 
 
274 aa  112  7.000000000000001e-24  Herpetosiphon aurantiacus ATCC 23779  Bacteria  decreased coverage  0.000362296  n/a   
 
 
-
 
NC_008786  Veis_2127  binding-protein-dependent transport systems inner membrane component  28.51 
 
 
255 aa  112  7.000000000000001e-24  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.427162 
 
 
-
 
NC_009720  Xaut_3758  binding-protein-dependent transport systems inner membrane component  29.66 
 
 
256 aa  111  1.0000000000000001e-23  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_0394  binding-protein-dependent transport systems inner membrane component  28.94 
 
 
259 aa  111  1.0000000000000001e-23  Cupriavidus metallidurans CH34  Bacteria  normal  hitchhiker  0.00657833 
 
 
-
 
NC_008148  Rxyl_2084  binding-protein-dependent transport systems inner membrane component  34.71 
 
 
260 aa  111  1.0000000000000001e-23  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.566245  n/a   
 
 
-
 
NC_009667  Oant_0278  binding-protein-dependent transport systems inner membrane component  27.8 
 
 
258 aa  111  1.0000000000000001e-23  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_1834  binding-protein-dependent transport systems inner membrane component  27.84 
 
 
268 aa  112  1.0000000000000001e-23  Desulfotomaculum reducens MI-1  Bacteria  normal  0.101401  n/a   
 
 
-
 
NC_009379  Pnuc_1181  binding-protein-dependent transport systems inner membrane component  27.76 
 
 
271 aa  111  1.0000000000000001e-23  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_02100  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  27.86 
 
 
308 aa  111  2.0000000000000002e-23  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_1373  binding-protein-dependent transport systems inner membrane component  34.54 
 
 
303 aa  110  2.0000000000000002e-23  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.674946  normal  0.833857 
 
 
-
 
NC_012850  Rleg_3934  binding-protein-dependent transport systems inner membrane component  31.54 
 
 
278 aa  110  2.0000000000000002e-23  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.421742  normal 
 
 
-
 
NC_009524  PsycPRwf_1445  binding-protein-dependent transport systems inner membrane component  27.54 
 
 
259 aa  110  3e-23  Psychrobacter sp. PRwf-1  Bacteria  normal  normal  0.318112 
 
 
-
 
NC_009712  Mboo_2012  binding-protein-dependent transport systems inner membrane component  28.35 
 
 
280 aa  110  3e-23  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.338733  normal  0.193625 
 
 
-
 
NC_008709  Ping_2376  ABC transporter substrate binding inner membrane protein  29.46 
 
 
265 aa  110  3e-23  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
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