More than 300 homologs were found in PanDaTox collection
for query gene Pden_4882 on replicon NC_008688
Organism: Paracoccus denitrificans PD1222



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008688  Pden_4882  binding-protein-dependent transport systems inner membrane component  100 
 
 
259 aa  509  1e-143  Paracoccus denitrificans PD1222  Bacteria  normal  0.947992  normal 
 
 
-
 
NC_009504  BOV_A0261  ABC transporter, permease protein  70.7 
 
 
263 aa  344  1e-93  Brucella ovis ATCC 25840  Bacteria  normal  0.597346  n/a   
 
 
-
 
NC_004311  BRA0285  ABC transporter, permease protein  69.92 
 
 
263 aa  341  5e-93  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_2254  binding-protein-dependent transport systems inner membrane component  69.77 
 
 
264 aa  341  5.999999999999999e-93  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.440017  n/a   
 
 
-
 
NC_009668  Oant_3590  binding-protein-dependent transport systems inner membrane component  69.92 
 
 
262 aa  341  8e-93  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6067  ABC transporter permease  72.66 
 
 
261 aa  336  1.9999999999999998e-91  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1056  binding-protein-dependent transport systems inner membrane component  67.06 
 
 
266 aa  332  3e-90  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.498595  n/a   
 
 
-
 
NC_010511  M446_1432  binding-protein-dependent transport systems inner membrane component  66.27 
 
 
260 aa  332  4e-90  Methylobacterium sp. 4-46  Bacteria  normal  0.324199  normal  0.863766 
 
 
-
 
NC_007958  RPD_2107  binding-protein-dependent transport systems inner membrane component  68.99 
 
 
265 aa  310  1e-83  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.970819 
 
 
-
 
NC_009720  Xaut_3212  binding-protein-dependent transport systems inner membrane component  69.33 
 
 
271 aa  308  5.9999999999999995e-83  Xanthobacter autotrophicus Py2  Bacteria  normal  0.896165  normal 
 
 
-
 
NC_010622  Bphy_0957  binding-protein-dependent transport systems inner membrane component  60.08 
 
 
274 aa  307  1.0000000000000001e-82  Burkholderia phymatum STM815  Bacteria  normal  0.199065  normal 
 
 
-
 
NC_007951  Bxe_A2355  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  59.32 
 
 
274 aa  303  2.0000000000000002e-81  Burkholderia xenovorans LB400  Bacteria  normal  0.214574  normal  0.0382396 
 
 
-
 
NC_007778  RPB_3334  binding-protein dependent transport system inner membrane protein  70.7 
 
 
265 aa  302  3.0000000000000004e-81  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.227064  normal  0.190195 
 
 
-
 
NC_010681  Bphyt_1832  binding-protein-dependent transport systems inner membrane component  58.56 
 
 
274 aa  297  9e-80  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.146122 
 
 
-
 
NC_003295  RSc1200  transmembrane permease ABC transporter protein  58.46 
 
 
263 aa  285  4e-76  Ralstonia solanacearum GMI1000  Bacteria  normal  0.441856  normal  0.826922 
 
 
-
 
NC_010682  Rpic_1044  binding-protein-dependent transport systems inner membrane component  58.08 
 
 
263 aa  285  4e-76  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_1136  binding-protein-dependent transport systems inner membrane component  57.69 
 
 
263 aa  285  5.999999999999999e-76  Ralstonia pickettii 12D  Bacteria  normal  0.629035  normal  0.968824 
 
 
-
 
NC_007973  Rmet_2120  binding-protein-dependent transport systems inner membrane component  64.16 
 
 
263 aa  282  3.0000000000000004e-75  Cupriavidus metallidurans CH34  Bacteria  normal  0.0243564  normal  0.0474626 
 
 
-
 
NC_014213  Mesil_3278  ABC transporter related protein  65.77 
 
 
257 aa  280  2e-74  Meiothermus silvanus DSM 9946  Bacteria  hitchhiker  0.000407876  normal  0.0335836 
 
 
-
 
NC_007347  Reut_A2103  binding-protein dependent transport system inner membrane protein  63.68 
 
 
263 aa  274  1.0000000000000001e-72  Ralstonia eutropha JMP134  Bacteria  normal  0.153016  n/a   
 
 
-
 
NC_012791  Vapar_2336  binding-protein-dependent transport systems inner membrane component  57.68 
 
 
277 aa  270  2e-71  Variovorax paradoxus S110  Bacteria  normal  0.544063  n/a   
 
 
-
 
NC_007948  Bpro_2274  binding-protein-dependent transport systems inner membrane component  57.68 
 
 
279 aa  266  2e-70  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_2746  binding-protein-dependent transport systems inner membrane component  57.96 
 
 
283 aa  259  4e-68  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_012857  Rpic12D_4149  binding-protein-dependent transport systems inner membrane component  52.36 
 
 
276 aa  255  4e-67  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4037  binding-protein-dependent transport systems inner membrane component  52.36 
 
 
276 aa  255  4e-67  Ralstonia pickettii 12J  Bacteria  normal  0.960786  normal 
 
 
-
 
NC_011894  Mnod_2256  binding-protein-dependent transport systems inner membrane component  55.51 
 
 
268 aa  234  8e-61  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_5061  binding-protein-dependent transport systems inner membrane component  40.77 
 
 
293 aa  210  2e-53  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.877762  normal  0.739003 
 
 
-
 
NC_010623  Bphy_3961  binding-protein-dependent transport systems inner membrane component  49.35 
 
 
287 aa  209  4e-53  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_5341  binding-protein-dependent transport systems inner membrane component  41.9 
 
 
293 aa  208  6e-53  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.7364 
 
 
-
 
NC_007952  Bxe_B0493  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  50 
 
 
287 aa  208  8e-53  Burkholderia xenovorans LB400  Bacteria  normal  0.114665  normal 
 
 
-
 
NC_010676  Bphyt_4033  binding-protein-dependent transport systems inner membrane component  49.56 
 
 
287 aa  207  2e-52  Burkholderia phytofirmans PsJN  Bacteria  normal  0.753159  normal 
 
 
-
 
NC_010084  Bmul_0034  binding-protein-dependent transport systems inner membrane component  46.09 
 
 
285 aa  204  9e-52  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_0033  binding-protein-dependent transport systems inner membrane component  46.09 
 
 
282 aa  204  1e-51  Burkholderia ambifaria MC40-6  Bacteria  normal  0.589022  normal 
 
 
-
 
NC_008390  Bamb_0024  binding-protein-dependent transport systems inner membrane component  45.7 
 
 
285 aa  204  2e-51  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_3330  ABC transporter membrane spanning protein  41.9 
 
 
295 aa  203  2e-51  Agrobacterium vitis S4  Bacteria  normal  0.730487  n/a   
 
 
-
 
NC_010508  Bcenmc03_0051  binding-protein-dependent transport systems inner membrane component  48.25 
 
 
282 aa  202  3e-51  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A3216  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  46.09 
 
 
285 aa  202  3e-51  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_0038  binding-protein-dependent transport systems inner membrane component  48.25 
 
 
285 aa  202  3e-51  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.090458  n/a   
 
 
-
 
NC_008542  Bcen2424_0032  binding-protein-dependent transport systems inner membrane component  48.25 
 
 
285 aa  202  3e-51  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_1531  binding-protein-dependent transport systems inner membrane component  43.97 
 
 
295 aa  200  1.9999999999999998e-50  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_3514  binding-protein-dependent transport systems inner membrane component  44.92 
 
 
295 aa  199  3e-50  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.739127  n/a   
 
 
-
 
NC_007908  Rfer_3114  binding-protein-dependent transport systems inner membrane component  48.25 
 
 
294 aa  197  1.0000000000000001e-49  Rhodoferax ferrireducens T118  Bacteria  normal  0.0684117  n/a   
 
 
-
 
NC_007651  BTH_I0037  ABC transporter, permease protein  45.14 
 
 
259 aa  197  2.0000000000000003e-49  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_0950  binding-protein-dependent transport systems inner membrane component  45.85 
 
 
283 aa  196  4.0000000000000005e-49  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.616045  n/a   
 
 
-
 
NC_013131  Caci_5602  binding-protein-dependent transport systems inner membrane component  46.88 
 
 
302 aa  196  4.0000000000000005e-49  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.033554  normal  0.953446 
 
 
-
 
NC_006348  BMA2678  ABC transporter, permease protein  46.09 
 
 
285 aa  195  6e-49  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2699  ABC transporter, permease protein  46.09 
 
 
282 aa  195  8.000000000000001e-49  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0253  ABC transporter, permease protein  46.09 
 
 
282 aa  195  8.000000000000001e-49  Burkholderia pseudomallei 1710b  Bacteria  normal  0.735185  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3274  ABC transporter, permease protein  46.09 
 
 
282 aa  195  8.000000000000001e-49  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1853  ABC transporter, permease protein  46.09 
 
 
282 aa  195  8.000000000000001e-49  Burkholderia mallei NCTC 10229  Bacteria  normal  0.989072  n/a   
 
 
-
 
NC_009074  BURPS668_0040  ABC transporter, permease protein  46.09 
 
 
282 aa  195  8.000000000000001e-49  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0040  ABC transporter, permease protein  46.09 
 
 
282 aa  195  8.000000000000001e-49  Burkholderia pseudomallei 1106a  Bacteria  normal  0.522623  n/a   
 
 
-
 
NC_009921  Franean1_4522  binding-protein-dependent transport systems inner membrane component  35.74 
 
 
329 aa  172  5.999999999999999e-42  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_2962  binding-protein-dependent transport systems inner membrane component  40.83 
 
 
280 aa  167  1e-40  Chelativorans sp. BNC1  Bacteria  normal  0.0794658  n/a   
 
 
-
 
NC_013525  Tter_0231  binding-protein-dependent transport systems inner membrane component  36.36 
 
 
271 aa  166  4e-40  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009077  Mjls_2561  binding-protein-dependent transport systems inner membrane component  38.46 
 
 
279 aa  147  2.0000000000000003e-34  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_2524  binding-protein-dependent transport systems inner membrane component  38.06 
 
 
279 aa  145  4.0000000000000006e-34  Mycobacterium sp. MCS  Bacteria  normal  0.667278  n/a   
 
 
-
 
NC_008705  Mkms_2569  binding-protein-dependent transport systems inner membrane component  38.06 
 
 
279 aa  145  4.0000000000000006e-34  Mycobacterium sp. KMS  Bacteria  normal  0.568124  normal 
 
 
-
 
NC_007778  RPB_3099  binding-protein dependent transport system inner membrane protein  34.56 
 
 
261 aa  133  3e-30  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.578785 
 
 
-
 
NC_011059  Paes_0622  binding-protein-dependent transport systems inner membrane component  34.72 
 
 
257 aa  132  3.9999999999999996e-30  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_009379  Pnuc_1181  binding-protein-dependent transport systems inner membrane component  29.88 
 
 
271 aa  132  5e-30  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_2777  binding-protein-dependent transport systems inner membrane component  30.49 
 
 
292 aa  131  1.0000000000000001e-29  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_3131  binding-protein-dependent transport systems inner membrane component  32.58 
 
 
281 aa  129  4.0000000000000003e-29  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_1862  binding-protein-dependent transport systems inner membrane component  36.16 
 
 
257 aa  126  4.0000000000000003e-28  Variovorax paradoxus S110  Bacteria  normal  0.116723  n/a   
 
 
-
 
NC_007333  Tfu_1306  ABC transporter, permease component  33.94 
 
 
286 aa  125  6e-28  Thermobifida fusca YX  Bacteria  normal  0.334764  n/a   
 
 
-
 
NC_012793  GWCH70_2621  binding-protein-dependent transport systems inner membrane component  31.02 
 
 
281 aa  123  3e-27  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.00000218671  n/a   
 
 
-
 
NC_010320  Teth514_2295  binding-protein-dependent transport systems inner membrane component  28.81 
 
 
272 aa  123  4e-27  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_21600  aliphatic sulfonates ABC transporter, inner membrane component  33.2 
 
 
284 aa  122  6e-27  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_0620  binding-protein-dependent transport systems inner membrane component  36.53 
 
 
254 aa  122  6e-27  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.63161  normal 
 
 
-
 
NC_013457  VEA_000865  hydroxymethylpyrimidine ABC transporter transmembrane component  32.57 
 
 
266 aa  120  1.9999999999999998e-26  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3118  binding-protein dependent transport system inner membrane protein  31.84 
 
 
284 aa  120  1.9999999999999998e-26  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_3181  binding-protein-dependent transport systems inner membrane component  33.64 
 
 
277 aa  120  1.9999999999999998e-26  Burkholderia phymatum STM815  Bacteria  normal  0.0283642  normal 
 
 
-
 
NC_009485  BBta_6360  putative sulfonate ABC transporter, permease protein  32.63 
 
 
267 aa  120  3e-26  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.821284  normal 
 
 
-
 
NC_011894  Mnod_2985  binding-protein-dependent transport systems inner membrane component  30.09 
 
 
273 aa  119  3.9999999999999996e-26  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_06840  ABC-type nitrate/sulfonate/bicarbonate transport system permease component  32.57 
 
 
266 aa  119  3.9999999999999996e-26  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007348  Reut_B5801  binding-protein dependent transport system inner membrane protein  30.09 
 
 
290 aa  119  4.9999999999999996e-26  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_7629  putative ABC transporter permease protein  30.41 
 
 
282 aa  119  6e-26  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.262472  normal  0.441686 
 
 
-
 
NC_013131  Caci_3923  binding-protein-dependent transport systems inner membrane component  29.05 
 
 
289 aa  119  6e-26  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.276752  normal  0.204471 
 
 
-
 
NC_007005  Psyr_3598  binding-protein dependent transport system inner membrane protein  32.34 
 
 
285 aa  118  9e-26  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.330128 
 
 
-
 
NC_003909  BCE_0797  ABC transporter, permease protein, putative  34.01 
 
 
250 aa  118  9.999999999999999e-26  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_2574  binding-protein-dependent transport systems inner membrane component  30.9 
 
 
270 aa  117  1.9999999999999998e-25  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_1169  putative ABC transporter permease protein  33.5 
 
 
279 aa  116  3e-25  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_4556  binding-protein-dependent transport systems inner membrane component  28.63 
 
 
267 aa  116  3.9999999999999997e-25  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_1796  sulfonate ABC transporter, permease protein, putative  31.91 
 
 
285 aa  115  7.999999999999999e-25  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0770  binding-protein-dependent transport systems inner membrane component  30.65 
 
 
273 aa  115  7.999999999999999e-25  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_0614  binding-protein-dependent transport systems inner membrane component  33.5 
 
 
250 aa  115  8.999999999999998e-25  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1151  binding-protein-dependent transport systems inner membrane component  28.97 
 
 
254 aa  114  1.0000000000000001e-24  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0784  putative ABC transporter, permease protein  32.99 
 
 
250 aa  114  1.0000000000000001e-24  Bacillus cereus B4264  Bacteria  normal  0.605831  n/a   
 
 
-
 
NC_005945  BAS2712  sulfonate ABC transporter permease  32.39 
 
 
282 aa  114  1.0000000000000001e-24  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_2920  sulfonate ABC transporter permease protein  32.39 
 
 
282 aa  114  1.0000000000000001e-24  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_1998  binding-protein-dependent transport systems inner membrane component  31.48 
 
 
283 aa  115  1.0000000000000001e-24  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.894639  n/a   
 
 
-
 
NC_013525  Tter_0403  binding-protein-dependent transport systems inner membrane component  31.34 
 
 
271 aa  114  1.0000000000000001e-24  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011772  BCG9842_B4547  putative ABC transporter, permease protein  32.99 
 
 
251 aa  114  2.0000000000000002e-24  Bacillus cereus G9842  Bacteria  normal  0.113137  normal  0.441246 
 
 
-
 
NC_010184  BcerKBAB4_0643  binding-protein-dependent transport systems inner membrane component  33.5 
 
 
251 aa  114  2.0000000000000002e-24  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0881  putative ABC transporter, permease protein  30.24 
 
 
251 aa  114  2.0000000000000002e-24  Bacillus cereus AH187  Bacteria  hitchhiker  0.00328051  n/a   
 
 
-
 
NC_009667  Oant_0278  binding-protein-dependent transport systems inner membrane component  31.35 
 
 
258 aa  113  3e-24  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_3506  binding-protein-dependent transport systems inner membrane component  35.43 
 
 
282 aa  112  4.0000000000000004e-24  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0528385  normal  0.0939424 
 
 
-
 
NC_005957  BT9727_0637  ABC transporter, permease  32.49 
 
 
250 aa  112  6e-24  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00537874  n/a   
 
 
-
 
NC_013093  Amir_4887  binding-protein-dependent transport systems inner membrane component  31.96 
 
 
267 aa  112  6e-24  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_2657  binding-protein-dependent transport systems inner membrane component  35.09 
 
 
269 aa  112  7.000000000000001e-24  Caulobacter sp. K31  Bacteria  normal  normal  0.363458 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>