More than 300 homologs were found in PanDaTox collection
for query gene Rpal_2254 on replicon NC_011004
Organism: Rhodopseudomonas palustris TIE-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011004  Rpal_2254  binding-protein-dependent transport systems inner membrane component  100 
 
 
264 aa  516  1.0000000000000001e-145  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.440017  n/a   
 
 
-
 
NC_007958  RPD_2107  binding-protein-dependent transport systems inner membrane component  90.94 
 
 
265 aa  427  1e-118  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.970819 
 
 
-
 
NC_007778  RPB_3334  binding-protein dependent transport system inner membrane protein  91.32 
 
 
265 aa  414  9.999999999999999e-116  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.227064  normal  0.190195 
 
 
-
 
NC_009485  BBta_6067  ABC transporter permease  80.84 
 
 
261 aa  390  1e-107  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008688  Pden_4882  binding-protein-dependent transport systems inner membrane component  69.77 
 
 
259 aa  360  9e-99  Paracoccus denitrificans PD1222  Bacteria  normal  0.947992  normal 
 
 
-
 
NC_009720  Xaut_3212  binding-protein-dependent transport systems inner membrane component  69.81 
 
 
271 aa  346  2e-94  Xanthobacter autotrophicus Py2  Bacteria  normal  0.896165  normal 
 
 
-
 
NC_011894  Mnod_1056  binding-protein-dependent transport systems inner membrane component  65.52 
 
 
266 aa  345  4e-94  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.498595  n/a   
 
 
-
 
NC_010511  M446_1432  binding-protein-dependent transport systems inner membrane component  65.77 
 
 
260 aa  345  4e-94  Methylobacterium sp. 4-46  Bacteria  normal  0.324199  normal  0.863766 
 
 
-
 
NC_009668  Oant_3590  binding-protein-dependent transport systems inner membrane component  65.9 
 
 
262 aa  328  8e-89  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0261  ABC transporter, permease protein  65.4 
 
 
263 aa  326  2.0000000000000001e-88  Brucella ovis ATCC 25840  Bacteria  normal  0.597346  n/a   
 
 
-
 
NC_004311  BRA0285  ABC transporter, permease protein  64.64 
 
 
263 aa  323  1e-87  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_014213  Mesil_3278  ABC transporter related protein  65.2 
 
 
257 aa  287  2e-76  Meiothermus silvanus DSM 9946  Bacteria  hitchhiker  0.000407876  normal  0.0335836 
 
 
-
 
NC_010622  Bphy_0957  binding-protein-dependent transport systems inner membrane component  52.03 
 
 
274 aa  283  2.0000000000000002e-75  Burkholderia phymatum STM815  Bacteria  normal  0.199065  normal 
 
 
-
 
NC_010681  Bphyt_1832  binding-protein-dependent transport systems inner membrane component  51.29 
 
 
274 aa  280  2e-74  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.146122 
 
 
-
 
NC_007951  Bxe_A2355  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  51.29 
 
 
274 aa  280  2e-74  Burkholderia xenovorans LB400  Bacteria  normal  0.214574  normal  0.0382396 
 
 
-
 
NC_003295  RSc1200  transmembrane permease ABC transporter protein  53.99 
 
 
263 aa  275  4e-73  Ralstonia solanacearum GMI1000  Bacteria  normal  0.441856  normal  0.826922 
 
 
-
 
NC_010682  Rpic_1044  binding-protein-dependent transport systems inner membrane component  53.99 
 
 
263 aa  273  3e-72  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_1136  binding-protein-dependent transport systems inner membrane component  54.37 
 
 
263 aa  273  3e-72  Ralstonia pickettii 12D  Bacteria  normal  0.629035  normal  0.968824 
 
 
-
 
NC_007973  Rmet_2120  binding-protein-dependent transport systems inner membrane component  57.96 
 
 
263 aa  266  2.9999999999999995e-70  Cupriavidus metallidurans CH34  Bacteria  normal  0.0243564  normal  0.0474626 
 
 
-
 
NC_007347  Reut_A2103  binding-protein dependent transport system inner membrane protein  57.52 
 
 
263 aa  262  4e-69  Ralstonia eutropha JMP134  Bacteria  normal  0.153016  n/a   
 
 
-
 
NC_012791  Vapar_2336  binding-protein-dependent transport systems inner membrane component  52.7 
 
 
277 aa  258  8e-68  Variovorax paradoxus S110  Bacteria  normal  0.544063  n/a   
 
 
-
 
NC_007948  Bpro_2274  binding-protein-dependent transport systems inner membrane component  53.53 
 
 
279 aa  255  6e-67  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_2746  binding-protein-dependent transport systems inner membrane component  54.29 
 
 
283 aa  248  5e-65  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010678  Rpic_4037  binding-protein-dependent transport systems inner membrane component  47.45 
 
 
276 aa  248  8e-65  Ralstonia pickettii 12J  Bacteria  normal  0.960786  normal 
 
 
-
 
NC_012857  Rpic12D_4149  binding-protein-dependent transport systems inner membrane component  47.45 
 
 
276 aa  248  8e-65  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_2256  binding-protein-dependent transport systems inner membrane component  59.91 
 
 
268 aa  236  3e-61  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_3330  ABC transporter membrane spanning protein  42.8 
 
 
295 aa  218  7.999999999999999e-56  Agrobacterium vitis S4  Bacteria  normal  0.730487  n/a   
 
 
-
 
NC_012848  Rleg_5061  binding-protein-dependent transport systems inner membrane component  46.02 
 
 
293 aa  216  2.9999999999999998e-55  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.877762  normal  0.739003 
 
 
-
 
NC_011368  Rleg2_5341  binding-protein-dependent transport systems inner membrane component  46.46 
 
 
293 aa  215  5.9999999999999996e-55  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.7364 
 
 
-
 
NC_009668  Oant_3514  binding-protein-dependent transport systems inner membrane component  46.55 
 
 
295 aa  203  2e-51  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.739127  n/a   
 
 
-
 
NC_010676  Bphyt_4033  binding-protein-dependent transport systems inner membrane component  48.89 
 
 
287 aa  203  2e-51  Burkholderia phytofirmans PsJN  Bacteria  normal  0.753159  normal 
 
 
-
 
NC_007908  Rfer_3114  binding-protein-dependent transport systems inner membrane component  47.81 
 
 
294 aa  203  2e-51  Rhodoferax ferrireducens T118  Bacteria  normal  0.0684117  n/a   
 
 
-
 
NC_007952  Bxe_B0493  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  48.44 
 
 
287 aa  203  2e-51  Burkholderia xenovorans LB400  Bacteria  normal  0.114665  normal 
 
 
-
 
NC_010623  Bphy_3961  binding-protein-dependent transport systems inner membrane component  48.23 
 
 
287 aa  202  3e-51  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I0037  ABC transporter, permease protein  45.8 
 
 
259 aa  202  6e-51  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_0038  binding-protein-dependent transport systems inner membrane component  45.63 
 
 
285 aa  201  9.999999999999999e-51  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.090458  n/a   
 
 
-
 
NC_008542  Bcen2424_0032  binding-protein-dependent transport systems inner membrane component  45.63 
 
 
285 aa  201  9.999999999999999e-51  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_0033  binding-protein-dependent transport systems inner membrane component  46.27 
 
 
282 aa  200  1.9999999999999998e-50  Burkholderia ambifaria MC40-6  Bacteria  normal  0.589022  normal 
 
 
-
 
NC_006348  BMA2678  ABC transporter, permease protein  47.84 
 
 
285 aa  200  1.9999999999999998e-50  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0253  ABC transporter, permease protein  47.84 
 
 
282 aa  200  1.9999999999999998e-50  Burkholderia pseudomallei 1710b  Bacteria  normal  0.735185  n/a   
 
 
-
 
NC_008390  Bamb_0024  binding-protein-dependent transport systems inner membrane component  45.88 
 
 
285 aa  200  1.9999999999999998e-50  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_0051  binding-protein-dependent transport systems inner membrane component  45.24 
 
 
282 aa  200  1.9999999999999998e-50  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008785  BMASAVP1_A3274  ABC transporter, permease protein  47.84 
 
 
282 aa  200  1.9999999999999998e-50  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1853  ABC transporter, permease protein  47.84 
 
 
282 aa  200  1.9999999999999998e-50  Burkholderia mallei NCTC 10229  Bacteria  normal  0.989072  n/a   
 
 
-
 
NC_009074  BURPS668_0040  ABC transporter, permease protein  47.84 
 
 
282 aa  200  1.9999999999999998e-50  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0040  ABC transporter, permease protein  47.84 
 
 
282 aa  200  1.9999999999999998e-50  Burkholderia pseudomallei 1106a  Bacteria  normal  0.522623  n/a   
 
 
-
 
NC_009080  BMA10247_2699  ABC transporter, permease protein  47.84 
 
 
282 aa  200  1.9999999999999998e-50  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_1531  binding-protein-dependent transport systems inner membrane component  41.67 
 
 
295 aa  199  3e-50  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010084  Bmul_0034  binding-protein-dependent transport systems inner membrane component  45.49 
 
 
285 aa  198  6e-50  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A3216  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  45.49 
 
 
285 aa  198  7e-50  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_5602  binding-protein-dependent transport systems inner membrane component  45.58 
 
 
302 aa  196  3e-49  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.033554  normal  0.953446 
 
 
-
 
NC_011004  Rpal_0950  binding-protein-dependent transport systems inner membrane component  45.85 
 
 
283 aa  192  5e-48  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.616045  n/a   
 
 
-
 
NC_009921  Franean1_4522  binding-protein-dependent transport systems inner membrane component  35.02 
 
 
329 aa  170  2e-41  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0231  binding-protein-dependent transport systems inner membrane component  36.04 
 
 
271 aa  163  2.0000000000000002e-39  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008254  Meso_2962  binding-protein-dependent transport systems inner membrane component  38.22 
 
 
280 aa  158  1e-37  Chelativorans sp. BNC1  Bacteria  normal  0.0794658  n/a   
 
 
-
 
NC_009921  Franean1_3131  binding-protein-dependent transport systems inner membrane component  34.1 
 
 
281 aa  136  4e-31  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_7629  putative ABC transporter permease protein  34.4 
 
 
282 aa  134  9.999999999999999e-31  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.262472  normal  0.441686 
 
 
-
 
NC_007778  RPB_3099  binding-protein dependent transport system inner membrane protein  35.17 
 
 
261 aa  134  9.999999999999999e-31  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.578785 
 
 
-
 
NC_009077  Mjls_2561  binding-protein-dependent transport systems inner membrane component  39.81 
 
 
279 aa  133  3e-30  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_2524  binding-protein-dependent transport systems inner membrane component  39.35 
 
 
279 aa  132  6e-30  Mycobacterium sp. MCS  Bacteria  normal  0.667278  n/a   
 
 
-
 
NC_008705  Mkms_2569  binding-protein-dependent transport systems inner membrane component  39.35 
 
 
279 aa  132  6e-30  Mycobacterium sp. KMS  Bacteria  normal  0.568124  normal 
 
 
-
 
NC_009667  Oant_0278  binding-protein-dependent transport systems inner membrane component  33.73 
 
 
258 aa  130  2.0000000000000002e-29  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_2985  binding-protein-dependent transport systems inner membrane component  32.76 
 
 
273 aa  128  9.000000000000001e-29  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_06840  ABC-type nitrate/sulfonate/bicarbonate transport system permease component  31.98 
 
 
266 aa  128  1.0000000000000001e-28  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007333  Tfu_1306  ABC transporter, permease component  32.94 
 
 
286 aa  127  1.0000000000000001e-28  Thermobifida fusca YX  Bacteria  normal  0.334764  n/a   
 
 
-
 
NC_009379  Pnuc_1181  binding-protein-dependent transport systems inner membrane component  28.74 
 
 
271 aa  127  1.0000000000000001e-28  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_2621  binding-protein-dependent transport systems inner membrane component  29.73 
 
 
281 aa  127  3e-28  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.00000218671  n/a   
 
 
-
 
NC_009505  BOV_0202  ABC transporter, permease protein  34.13 
 
 
258 aa  126  4.0000000000000003e-28  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_000865  hydroxymethylpyrimidine ABC transporter transmembrane component  30.86 
 
 
266 aa  126  4.0000000000000003e-28  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR0211  ABC transporter, permease protein  34.13 
 
 
258 aa  125  5e-28  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6360  putative sulfonate ABC transporter, permease protein  33.05 
 
 
267 aa  125  6e-28  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.821284  normal 
 
 
-
 
NC_008686  Pden_0033  binding-protein-dependent transport systems inner membrane component  35.02 
 
 
243 aa  125  8.000000000000001e-28  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0770  binding-protein-dependent transport systems inner membrane component  32.03 
 
 
273 aa  123  2e-27  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_008043  TM1040_3658  binding-protein-dependent transport systems inner membrane component  36.17 
 
 
245 aa  124  2e-27  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_2376  ABC transporter substrate binding inner membrane protein  30.8 
 
 
265 aa  121  9.999999999999999e-27  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_005957  BT9727_0637  ABC transporter, permease  30.35 
 
 
250 aa  120  1.9999999999999998e-26  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00537874  n/a   
 
 
-
 
NC_007348  Reut_B5801  binding-protein dependent transport system inner membrane protein  31.94 
 
 
290 aa  120  1.9999999999999998e-26  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_2295  binding-protein-dependent transport systems inner membrane component  26.12 
 
 
272 aa  120  1.9999999999999998e-26  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0637  ABC transporter, permease  30.35 
 
 
250 aa  120  3e-26  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0693  ABC transporter permease  30.35 
 
 
250 aa  119  3.9999999999999996e-26  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0727  ABC transporter permease  30.35 
 
 
250 aa  119  3.9999999999999996e-26  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0363276  n/a   
 
 
-
 
NC_011004  Rpal_2777  binding-protein-dependent transport systems inner membrane component  35.05 
 
 
292 aa  119  3.9999999999999996e-26  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0797  ABC transporter, permease protein, putative  30.35 
 
 
250 aa  119  4.9999999999999996e-26  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_0620  binding-protein-dependent transport systems inner membrane component  33.18 
 
 
254 aa  119  4.9999999999999996e-26  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.63161  normal 
 
 
-
 
NC_011773  BCAH820_0804  putative ABC transporter, permease protein  30.35 
 
 
250 aa  119  4.9999999999999996e-26  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.22036e-46 
 
 
-
 
NC_007005  Psyr_3598  binding-protein dependent transport system inner membrane protein  30.63 
 
 
285 aa  118  7.999999999999999e-26  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.330128 
 
 
-
 
NC_013093  Amir_4887  binding-protein-dependent transport systems inner membrane component  32.5 
 
 
267 aa  118  7.999999999999999e-26  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_3923  binding-protein-dependent transport systems inner membrane component  29.7 
 
 
289 aa  118  7.999999999999999e-26  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.276752  normal  0.204471 
 
 
-
 
NC_011725  BCB4264_A0784  putative ABC transporter, permease protein  30.35 
 
 
250 aa  118  9.999999999999999e-26  Bacillus cereus B4264  Bacteria  normal  0.605831  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0643  binding-protein-dependent transport systems inner membrane component  30.35 
 
 
251 aa  118  9.999999999999999e-26  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_1998  binding-protein-dependent transport systems inner membrane component  29.07 
 
 
283 aa  117  1.9999999999999998e-25  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.894639  n/a   
 
 
-
 
NC_013739  Cwoe_3818  binding-protein-dependent transport systems inner membrane component  32.51 
 
 
280 aa  117  1.9999999999999998e-25  Conexibacter woesei DSM 14684  Bacteria  normal  0.615395  normal  0.42897 
 
 
-
 
NC_013093  Amir_4889  binding-protein-dependent transport systems inner membrane component  32.05 
 
 
258 aa  117  1.9999999999999998e-25  Actinosynnema mirum DSM 43827  Bacteria  normal  0.90454  n/a   
 
 
-
 
NC_012791  Vapar_1862  binding-protein-dependent transport systems inner membrane component  32.27 
 
 
257 aa  117  3e-25  Variovorax paradoxus S110  Bacteria  normal  0.116723  n/a   
 
 
-
 
NC_012792  Vapar_6052  binding-protein-dependent transport systems inner membrane component  33.19 
 
 
274 aa  115  5e-25  Variovorax paradoxus S110  Bacteria  normal  0.0454164  n/a   
 
 
-
 
NC_013173  Dbac_0926  binding-protein-dependent transport systems inner membrane component  31.67 
 
 
249 aa  115  6e-25  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.04587  n/a   
 
 
-
 
NC_004578  PSPTO_1796  sulfonate ABC transporter, permease protein, putative  30.18 
 
 
285 aa  115  7.999999999999999e-25  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_0589  binding-protein-dependent transport systems inner membrane component  32.41 
 
 
269 aa  114  1.0000000000000001e-24  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011772  BCG9842_B4547  putative ABC transporter, permease protein  29.18 
 
 
251 aa  114  1.0000000000000001e-24  Bacillus cereus G9842  Bacteria  normal  0.113137  normal  0.441246 
 
 
-
 
NC_009485  BBta_1169  putative ABC transporter permease protein  34.03 
 
 
279 aa  115  1.0000000000000001e-24  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
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