More than 300 homologs were found in PanDaTox collection
for query gene TM1040_1494 on replicon NC_008044
Organism: Ruegeria sp. TM1040



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008044  TM1040_1494  binding-protein-dependent transport systems inner membrane component  100 
 
 
281 aa  552  1e-156  Ruegeria sp. TM1040  Bacteria  normal  0.58323  normal 
 
 
-
 
NC_008254  Meso_2046  binding-protein-dependent transport systems inner membrane component  72.14 
 
 
286 aa  383  1e-105  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_1465  binding-protein-dependent transport systems inner membrane component  72.14 
 
 
283 aa  380  1e-104  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_3460  ABC transporter membrane spanning protein  65.72 
 
 
288 aa  373  1e-102  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_0180  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  72.86 
 
 
283 aa  371  1e-102  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.105797  n/a   
 
 
-
 
NC_009049  Rsph17029_1813  binding-protein-dependent transport systems inner membrane component  73.21 
 
 
283 aa  371  1e-102  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.210707  normal  0.296576 
 
 
-
 
NC_009952  Dshi_1373  binding-protein-dependent transport systems inner membrane component  74.62 
 
 
303 aa  374  1e-102  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.674946  normal  0.833857 
 
 
-
 
NC_009636  Smed_2372  binding-protein-dependent transport systems inner membrane component  64.62 
 
 
289 aa  358  8e-98  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.239724 
 
 
-
 
NC_009667  Oant_0344  binding-protein-dependent transport systems inner membrane component  63.64 
 
 
286 aa  357  8e-98  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.113814  n/a   
 
 
-
 
NC_012850  Rleg_3297  binding-protein-dependent transport systems inner membrane component  64.6 
 
 
375 aa  357  9.999999999999999e-98  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.149558 
 
 
-
 
NC_011369  Rleg2_3042  binding-protein-dependent transport systems inner membrane component  66.8 
 
 
375 aa  351  5.9999999999999994e-96  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_2700  binding-protein-dependent transport systems inner membrane component  72.62 
 
 
316 aa  339  2e-92  Jannaschia sp. CCS1  Bacteria  normal  0.505407  normal  0.565906 
 
 
-
 
NC_009485  BBta_6031  putative ABC transporter, permease protein  62.6 
 
 
325 aa  336  1.9999999999999998e-91  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A3455  binding-protein dependent transport system inner membrane protein  61.94 
 
 
322 aa  306  3e-82  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.833863  n/a   
 
 
-
 
NC_010172  Mext_1731  binding-protein-dependent transport systems inner membrane component  66.82 
 
 
321 aa  290  2e-77  Methylobacterium extorquens PA1  Bacteria  normal  0.443029  normal 
 
 
-
 
NC_011757  Mchl_2050  binding-protein-dependent transport systems inner membrane component  66.36 
 
 
321 aa  288  7e-77  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.577348 
 
 
-
 
NC_010725  Mpop_1083  binding-protein-dependent transport systems inner membrane component  63.08 
 
 
321 aa  278  8e-74  Methylobacterium populi BJ001  Bacteria  normal  0.148611  normal  0.032179 
 
 
-
 
NC_012880  Dd703_0037  binding-protein-dependent transport systems inner membrane component  54.32 
 
 
362 aa  262  6e-69  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_1883  binding-protein-dependent transport systems inner membrane component  48.71 
 
 
322 aa  213  3.9999999999999995e-54  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.167871 
 
 
-
 
NC_014212  Mesil_2099  binding-protein-dependent transport systems inner membrane component  48.25 
 
 
306 aa  212  7e-54  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_0891  binding-protein-dependent transport systems inner membrane component  35.69 
 
 
268 aa  146  4.0000000000000006e-34  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.223421 
 
 
-
 
NC_013525  Tter_1221  binding-protein-dependent transport systems inner membrane component  38.27 
 
 
246 aa  142  4e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008786  Veis_0620  binding-protein-dependent transport systems inner membrane component  34.35 
 
 
254 aa  134  1.9999999999999998e-30  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.63161  normal 
 
 
-
 
NC_007778  RPB_3099  binding-protein dependent transport system inner membrane protein  34.04 
 
 
261 aa  132  6.999999999999999e-30  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.578785 
 
 
-
 
NC_014210  Ndas_4504  binding-protein-dependent transport systems inner membrane component  34.15 
 
 
281 aa  131  1.0000000000000001e-29  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_1862  binding-protein-dependent transport systems inner membrane component  32.62 
 
 
257 aa  130  3e-29  Variovorax paradoxus S110  Bacteria  normal  0.116723  n/a   
 
 
-
 
NC_011831  Cagg_3116  binding-protein-dependent transport systems inner membrane component  37.92 
 
 
272 aa  130  3e-29  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.025765  normal 
 
 
-
 
NC_013739  Cwoe_4254  binding-protein-dependent transport systems inner membrane component  33.96 
 
 
283 aa  128  8.000000000000001e-29  Conexibacter woesei DSM 14684  Bacteria  normal  0.0441349  normal  0.902161 
 
 
-
 
NC_013525  Tter_0403  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
271 aa  128  1.0000000000000001e-28  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011757  Mchl_2038  binding-protein-dependent transport systems inner membrane component  33.59 
 
 
264 aa  126  4.0000000000000003e-28  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.697058  normal  0.743835 
 
 
-
 
NC_010172  Mext_1719  binding-protein-dependent transport systems inner membrane component  34.34 
 
 
264 aa  126  4.0000000000000003e-28  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_0666  binding-protein-dependent transport systems inner membrane component  38.43 
 
 
272 aa  126  4.0000000000000003e-28  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_3753  binding-protein-dependent transport systems inner membrane component  33.62 
 
 
268 aa  125  5e-28  Jannaschia sp. CCS1  Bacteria  normal  0.333865  normal 
 
 
-
 
NC_012850  Rleg_3934  binding-protein-dependent transport systems inner membrane component  35.91 
 
 
278 aa  125  5e-28  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.421742  normal 
 
 
-
 
NC_009669  Oant_4580  binding-protein-dependent transport systems inner membrane component  35.95 
 
 
257 aa  125  6e-28  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_0669  binding-protein-dependent transport systems inner membrane component  38.43 
 
 
272 aa  125  7e-28  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0848141 
 
 
-
 
NC_013521  Sked_02100  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  36.27 
 
 
308 aa  124  1e-27  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_13670  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  32.91 
 
 
249 aa  125  1e-27  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_2627  binding-protein-dependent transport systems inner membrane component  36.6 
 
 
288 aa  124  2e-27  Actinosynnema mirum DSM 43827  Bacteria  normal  0.752734  n/a   
 
 
-
 
NC_009485  BBta_1169  putative ABC transporter permease protein  31.6 
 
 
279 aa  124  2e-27  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_3645  binding-protein-dependent transport systems inner membrane component  36.05 
 
 
268 aa  123  3e-27  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_0877  binding-protein-dependent transport systems inner membrane component  32.37 
 
 
260 aa  123  3e-27  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.00000000112184  n/a   
 
 
-
 
NC_007963  Csal_1933  binding-protein-dependent transport systems inner membrane component  31.56 
 
 
255 aa  123  3e-27  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.323499  n/a   
 
 
-
 
NC_008254  Meso_0814  binding-protein-dependent transport systems inner membrane component  32.48 
 
 
270 aa  122  7e-27  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0784  putative ABC transporter, permease protein  34.96 
 
 
250 aa  122  8e-27  Bacillus cereus B4264  Bacteria  normal  0.605831  n/a   
 
 
-
 
NC_009012  Cthe_2116  binding-protein-dependent transport systems inner membrane component  33.19 
 
 
253 aa  122  8e-27  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_012792  Vapar_6052  binding-protein-dependent transport systems inner membrane component  31.82 
 
 
274 aa  122  9e-27  Variovorax paradoxus S110  Bacteria  normal  0.0454164  n/a   
 
 
-
 
NC_011988  Avi_5406  ABC transporter membrane spanning protein  33.91 
 
 
251 aa  121  9.999999999999999e-27  Agrobacterium vitis S4  Bacteria  normal  0.408693  n/a   
 
 
-
 
NC_013515  Smon_0476  binding-protein-dependent transport systems inner membrane component  28.8 
 
 
249 aa  121  9.999999999999999e-27  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_012669  Bcav_2574  binding-protein-dependent transport systems inner membrane component  41.06 
 
 
252 aa  121  9.999999999999999e-27  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_4760  binding-protein-dependent transport systems inner membrane component  30 
 
 
267 aa  121  9.999999999999999e-27  Variovorax paradoxus S110  Bacteria  normal  0.318809  n/a   
 
 
-
 
NC_005957  BT9727_0637  ABC transporter, permease  34.15 
 
 
250 aa  121  1.9999999999999998e-26  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00537874  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0643  binding-protein-dependent transport systems inner membrane component  34.26 
 
 
251 aa  120  1.9999999999999998e-26  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0693  ABC transporter permease  34.15 
 
 
250 aa  120  3e-26  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0637  ABC transporter, permease  34.15 
 
 
250 aa  120  3e-26  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0804  putative ABC transporter, permease protein  34.15 
 
 
250 aa  120  3e-26  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.22036e-46 
 
 
-
 
NC_007530  GBAA_0727  ABC transporter permease  34.15 
 
 
250 aa  120  3e-26  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0363276  n/a   
 
 
-
 
NC_010725  Mpop_1095  binding-protein-dependent transport systems inner membrane component  33.72 
 
 
264 aa  119  3.9999999999999996e-26  Methylobacterium populi BJ001  Bacteria  normal  0.0240883  normal  0.166534 
 
 
-
 
NC_014148  Plim_2867  binding-protein-dependent transport systems inner membrane component  32.67 
 
 
277 aa  120  3.9999999999999996e-26  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_0333  binding-protein dependent transport system inner membrane protein  34.32 
 
 
278 aa  119  4.9999999999999996e-26  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_007953  Bxe_C0801  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  33.46 
 
 
298 aa  119  7e-26  Burkholderia xenovorans LB400  Bacteria  normal  0.0745387  normal 
 
 
-
 
NC_009921  Franean1_3131  binding-protein-dependent transport systems inner membrane component  35.64 
 
 
281 aa  119  7e-26  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_0797  ABC transporter, permease protein, putative  34.15 
 
 
250 aa  119  7.999999999999999e-26  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_3112  binding-protein-dependent transport systems inner membrane component  38.46 
 
 
253 aa  118  9e-26  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0371548 
 
 
-
 
NC_011772  BCG9842_B4547  putative ABC transporter, permease protein  33.74 
 
 
251 aa  118  9e-26  Bacillus cereus G9842  Bacteria  normal  0.113137  normal  0.441246 
 
 
-
 
NC_011658  BCAH187_A0881  putative ABC transporter, permease protein  33.74 
 
 
251 aa  118  9.999999999999999e-26  Bacillus cereus AH187  Bacteria  hitchhiker  0.00328051  n/a   
 
 
-
 
NC_008312  Tery_1625  binding-protein-dependent transport systems inner membrane component  31.1 
 
 
285 aa  118  9.999999999999999e-26  Trichodesmium erythraeum IMS101  Bacteria  normal  0.0792607  normal  0.95709 
 
 
-
 
NC_011894  Mnod_2985  binding-protein-dependent transport systems inner membrane component  31.82 
 
 
273 aa  117  1.9999999999999998e-25  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0278  binding-protein-dependent transport systems inner membrane component  31.27 
 
 
258 aa  117  1.9999999999999998e-25  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0770  binding-protein-dependent transport systems inner membrane component  33.06 
 
 
273 aa  117  3e-25  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_0614  binding-protein-dependent transport systems inner membrane component  33.86 
 
 
250 aa  117  3e-25  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3093  binding-protein dependent transport system inner membrane protein  33.33 
 
 
259 aa  115  6e-25  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.942666 
 
 
-
 
NC_013457  VEA_000865  hydroxymethylpyrimidine ABC transporter transmembrane component  29.89 
 
 
266 aa  115  6e-25  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3118  binding-protein dependent transport system inner membrane protein  30.8 
 
 
284 aa  115  7.999999999999999e-25  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_2296  binding-protein-dependent transport systems inner membrane component  34.76 
 
 
250 aa  115  1.0000000000000001e-24  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_2588  binding-protein-dependent transport systems inner membrane component  34.3 
 
 
267 aa  114  2.0000000000000002e-24  Pseudomonas putida W619  Bacteria  normal  normal  0.417353 
 
 
-
 
NC_007964  Nham_0427  binding-protein-dependent transport systems inner membrane component  33.58 
 
 
279 aa  114  2.0000000000000002e-24  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_3210  ABC transporter, permease protein  34.3 
 
 
267 aa  113  3e-24  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_0620  binding-protein-dependent transport systems inner membrane component  31.76 
 
 
258 aa  113  3e-24  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_1076  ABC transporter-like protein  35.86 
 
 
488 aa  113  4.0000000000000004e-24  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.276573 
 
 
-
 
NC_009253  Dred_3205  binding-protein-dependent transport systems inner membrane component  30.53 
 
 
265 aa  113  4.0000000000000004e-24  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.000457845  n/a   
 
 
-
 
NC_012852  Rleg_6281  binding-protein-dependent transport systems inner membrane component  30.23 
 
 
256 aa  112  5e-24  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.783663  normal 
 
 
-
 
NC_009654  Mmwyl1_2703  binding-protein-dependent transport systems inner membrane component  31.65 
 
 
263 aa  112  8.000000000000001e-24  Marinomonas sp. MWYL1  Bacteria  normal  0.88688  normal 
 
 
-
 
NC_007951  Bxe_A2015  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  29.32 
 
 
252 aa  111  1.0000000000000001e-23  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_0926  binding-protein-dependent transport systems inner membrane component  32 
 
 
249 aa  111  1.0000000000000001e-23  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.04587  n/a   
 
 
-
 
NC_011004  Rpal_0469  binding-protein-dependent transport systems inner membrane component  31.48 
 
 
274 aa  112  1.0000000000000001e-23  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.858995  n/a   
 
 
-
 
NC_008786  Veis_3506  binding-protein-dependent transport systems inner membrane component  32.65 
 
 
282 aa  111  1.0000000000000001e-23  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0528385  normal  0.0939424 
 
 
-
 
NC_007509  Bcep18194_C7650  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  34.31 
 
 
247 aa  110  2.0000000000000002e-23  Burkholderia sp. 383  Bacteria  normal  0.621765  normal 
 
 
-
 
NC_007925  RPC_0572  binding-protein-dependent transport systems inner membrane component  34.07 
 
 
276 aa  110  2.0000000000000002e-23  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_3419  binding-protein-dependent transport systems inner membrane component  31.91 
 
 
258 aa  110  3e-23  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.121812  n/a   
 
 
-
 
NC_011365  Gdia_3269  binding-protein-dependent transport systems inner membrane component  33.96 
 
 
253 aa  109  4.0000000000000004e-23  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.283078  normal 
 
 
-
 
NC_007802  Jann_1473  binding-protein-dependent transport systems inner membrane component  33.19 
 
 
283 aa  108  7.000000000000001e-23  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_3871  binding-protein-dependent transport systems inner membrane component  31.13 
 
 
280 aa  108  7.000000000000001e-23  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.208081  n/a   
 
 
-
 
NC_007778  RPB_0572  binding-protein-dependent transport systems inner membrane component  37.71 
 
 
274 aa  108  8.000000000000001e-23  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0627389  normal  0.343483 
 
 
-
 
NC_009485  BBta_7629  putative ABC transporter permease protein  30.51 
 
 
282 aa  108  8.000000000000001e-23  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.262472  normal  0.441686 
 
 
-
 
NC_004310  BR0211  ABC transporter, permease protein  31.6 
 
 
258 aa  108  1e-22  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_06840  ABC-type nitrate/sulfonate/bicarbonate transport system permease component  28.74 
 
 
266 aa  108  1e-22  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013739  Cwoe_3810  binding-protein-dependent transport systems inner membrane component  30.47 
 
 
258 aa  108  1e-22  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.42897 
 
 
-
 
NC_009484  Acry_0832  binding-protein-dependent transport systems inner membrane component  32.65 
 
 
254 aa  108  1e-22  Acidiphilium cryptum JF-5  Bacteria  normal  0.404323  n/a   
 
 
-
 
NC_009952  Dshi_2545  binding-protein-dependent transport system protein  33.51 
 
 
287 aa  107  2e-22  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.240068  normal  0.521676 
 
 
-
 
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