More than 300 homologs were found in PanDaTox collection
for query gene Nham_0427 on replicon NC_007964
Organism: Nitrobacter hamburgensis X14



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007964  Nham_0427  binding-protein-dependent transport systems inner membrane component  100 
 
 
279 aa  543  1e-154  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_0333  binding-protein dependent transport system inner membrane protein  89.86 
 
 
278 aa  441  1e-123  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_0469  binding-protein-dependent transport systems inner membrane component  78.75 
 
 
274 aa  371  1e-102  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.858995  n/a   
 
 
-
 
NC_007958  RPD_0258  binding-protein-dependent transport systems inner membrane component  84.15 
 
 
274 aa  368  1e-101  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.750925 
 
 
-
 
NC_009485  BBta_7480  ABC transporter permease  86.61 
 
 
271 aa  349  3e-95  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.477102  normal  0.131238 
 
 
-
 
NC_007925  RPC_0572  binding-protein-dependent transport systems inner membrane component  77.57 
 
 
276 aa  331  1e-89  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_0572  binding-protein-dependent transport systems inner membrane component  83.68 
 
 
274 aa  322  5e-87  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0627389  normal  0.343483 
 
 
-
 
NC_007802  Jann_1473  binding-protein-dependent transport systems inner membrane component  54.42 
 
 
283 aa  286  2e-76  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_007953  Bxe_C0801  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  56.08 
 
 
298 aa  285  5e-76  Burkholderia xenovorans LB400  Bacteria  normal  0.0745387  normal 
 
 
-
 
NC_009952  Dshi_1382  binding-protein-dependent transport systems inner membrane component  55.64 
 
 
285 aa  278  7e-74  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.13305  normal 
 
 
-
 
NC_008312  Tery_1625  binding-protein-dependent transport systems inner membrane component  50.18 
 
 
285 aa  274  1.0000000000000001e-72  Trichodesmium erythraeum IMS101  Bacteria  normal  0.0792607  normal  0.95709 
 
 
-
 
NC_009719  Plav_0891  binding-protein-dependent transport systems inner membrane component  57.81 
 
 
268 aa  272  6e-72  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.223421 
 
 
-
 
NC_011989  Avi_3552  ABC transporter membrane spanning protein  59.61 
 
 
285 aa  271  8.000000000000001e-72  Agrobacterium vitis S4  Bacteria  normal  0.0625026  n/a   
 
 
-
 
NC_011369  Rleg2_1676  binding-protein-dependent transport systems inner membrane component  54.74 
 
 
287 aa  263  2e-69  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  decreased coverage  0.00381914  normal 
 
 
-
 
NC_012848  Rleg_4665  binding-protein-dependent transport systems inner membrane component  51.99 
 
 
284 aa  260  2e-68  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.65192 
 
 
-
 
NC_009668  Oant_3871  binding-protein-dependent transport systems inner membrane component  50.74 
 
 
280 aa  259  4e-68  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.208081  n/a   
 
 
-
 
NC_012791  Vapar_5134  binding-protein-dependent transport systems inner membrane component  55.38 
 
 
294 aa  247  2e-64  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4760  binding-protein-dependent transport systems inner membrane component  49.23 
 
 
267 aa  243  3.9999999999999997e-63  Variovorax paradoxus S110  Bacteria  normal  0.318809  n/a   
 
 
-
 
NC_011666  Msil_1164  binding-protein-dependent transport systems inner membrane component  62.56 
 
 
260 aa  240  2e-62  Methylocella silvestris BL2  Bacteria  n/a    normal  0.233018 
 
 
-
 
NC_009485  BBta_1263  ABC transporter permease  48.24 
 
 
262 aa  239  4e-62  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.165267 
 
 
-
 
NC_008825  Mpe_A3414  ATP-binding protein of ABC transporter  52.14 
 
 
280 aa  236  3e-61  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.24016 
 
 
-
 
NC_010581  Bind_1091  binding-protein-dependent transport systems inner membrane component  59.58 
 
 
262 aa  235  6e-61  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_1095  binding-protein-dependent transport systems inner membrane component  48.44 
 
 
264 aa  229  4e-59  Methylobacterium populi BJ001  Bacteria  normal  0.0240883  normal  0.166534 
 
 
-
 
NC_008786  Veis_3145  binding-protein-dependent transport systems inner membrane component  58.47 
 
 
298 aa  228  6e-59  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.433007  normal  0.243208 
 
 
-
 
NC_007951  Bxe_A2015  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  53.39 
 
 
252 aa  226  3e-58  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_2038  binding-protein-dependent transport systems inner membrane component  47.66 
 
 
264 aa  225  6e-58  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.697058  normal  0.743835 
 
 
-
 
NC_010172  Mext_1719  binding-protein-dependent transport systems inner membrane component  47.66 
 
 
264 aa  225  6e-58  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_3210  ABC transporter, permease protein  49.02 
 
 
267 aa  205  9e-52  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_2588  binding-protein-dependent transport systems inner membrane component  48.41 
 
 
267 aa  202  4e-51  Pseudomonas putida W619  Bacteria  normal  normal  0.417353 
 
 
-
 
NC_009484  Acry_0832  binding-protein-dependent transport systems inner membrane component  54.96 
 
 
254 aa  192  6e-48  Acidiphilium cryptum JF-5  Bacteria  normal  0.404323  n/a   
 
 
-
 
NC_013440  Hoch_2033  binding-protein-dependent transport systems inner membrane component  45.54 
 
 
275 aa  155  5.0000000000000005e-37  Haliangium ochraceum DSM 14365  Bacteria  normal  0.0253714  normal  0.258175 
 
 
-
 
NC_014148  Plim_2867  binding-protein-dependent transport systems inner membrane component  34.9 
 
 
277 aa  144  1e-33  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_1260  binding-protein-dependent transport systems inner membrane component  44.28 
 
 
252 aa  141  9.999999999999999e-33  Caulobacter sp. K31  Bacteria  normal  0.21476  normal  0.0147088 
 
 
-
 
NC_012791  Vapar_1862  binding-protein-dependent transport systems inner membrane component  34.73 
 
 
257 aa  137  1e-31  Variovorax paradoxus S110  Bacteria  normal  0.116723  n/a   
 
 
-
 
NC_009952  Dshi_1373  binding-protein-dependent transport systems inner membrane component  31.8 
 
 
303 aa  134  9.999999999999999e-31  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.674946  normal  0.833857 
 
 
-
 
NC_008786  Veis_0620  binding-protein-dependent transport systems inner membrane component  36.02 
 
 
254 aa  135  9.999999999999999e-31  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.63161  normal 
 
 
-
 
NC_009253  Dred_3205  binding-protein-dependent transport systems inner membrane component  33.7 
 
 
265 aa  134  1.9999999999999998e-30  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.000457845  n/a   
 
 
-
 
NC_012792  Vapar_6052  binding-protein-dependent transport systems inner membrane component  35.53 
 
 
274 aa  129  5.0000000000000004e-29  Variovorax paradoxus S110  Bacteria  normal  0.0454164  n/a   
 
 
-
 
NC_011989  Avi_3460  ABC transporter membrane spanning protein  33.71 
 
 
288 aa  127  2.0000000000000002e-28  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_3753  binding-protein-dependent transport systems inner membrane component  31.02 
 
 
268 aa  127  2.0000000000000002e-28  Jannaschia sp. CCS1  Bacteria  normal  0.333865  normal 
 
 
-
 
NC_014210  Ndas_4504  binding-protein-dependent transport systems inner membrane component  41.67 
 
 
281 aa  126  3e-28  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_3788  binding-protein-dependent transport systems inner membrane component  39.44 
 
 
317 aa  126  4.0000000000000003e-28  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0255815  normal 
 
 
-
 
NC_009720  Xaut_3758  binding-protein-dependent transport systems inner membrane component  29.53 
 
 
256 aa  125  8.000000000000001e-28  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_1393  binding-protein-dependent transport systems inner membrane component  33.92 
 
 
254 aa  124  1e-27  Meiothermus ruber DSM 1279  Bacteria  normal  0.302994  normal  0.157809 
 
 
-
 
NC_013739  Cwoe_4254  binding-protein-dependent transport systems inner membrane component  33.72 
 
 
283 aa  124  2e-27  Conexibacter woesei DSM 14684  Bacteria  normal  0.0441349  normal  0.902161 
 
 
-
 
NC_013521  Sked_17280  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  36.4 
 
 
325 aa  124  2e-27  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.158115  normal  0.544115 
 
 
-
 
NC_009664  Krad_3112  binding-protein-dependent transport systems inner membrane component  38.67 
 
 
253 aa  122  5e-27  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0371548 
 
 
-
 
NC_008254  Meso_2046  binding-protein-dependent transport systems inner membrane component  33.7 
 
 
286 aa  121  9.999999999999999e-27  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009669  Oant_4580  binding-protein-dependent transport systems inner membrane component  33.2 
 
 
257 aa  120  1.9999999999999998e-26  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_7629  putative ABC transporter permease protein  34.2 
 
 
282 aa  119  3.9999999999999996e-26  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.262472  normal  0.441686 
 
 
-
 
NC_007778  RPB_3118  binding-protein dependent transport system inner membrane protein  29.96 
 
 
284 aa  119  6e-26  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_2281  binding-protein-dependent transport systems inner membrane component  32.34 
 
 
281 aa  118  7.999999999999999e-26  Frankia sp. EAN1pec  Bacteria  normal  0.695693  normal  0.331928 
 
 
-
 
NC_013521  Sked_02100  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  36.18 
 
 
308 aa  118  9.999999999999999e-26  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_3093  binding-protein dependent transport system inner membrane protein  33.33 
 
 
259 aa  118  9.999999999999999e-26  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.942666 
 
 
-
 
NC_013165  Shel_13670  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  34.89 
 
 
249 aa  117  1.9999999999999998e-25  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_1494  binding-protein-dependent transport systems inner membrane component  34.7 
 
 
281 aa  117  1.9999999999999998e-25  Ruegeria sp. TM1040  Bacteria  normal  0.58323  normal 
 
 
-
 
NC_010623  Bphy_3181  binding-protein-dependent transport systems inner membrane component  33.96 
 
 
277 aa  117  1.9999999999999998e-25  Burkholderia phymatum STM815  Bacteria  normal  0.0283642  normal 
 
 
-
 
NC_008254  Meso_0814  binding-protein-dependent transport systems inner membrane component  30.37 
 
 
270 aa  117  3e-25  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_007509  Bcep18194_C7650  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  36.29 
 
 
247 aa  116  5e-25  Burkholderia sp. 383  Bacteria  normal  0.621765  normal 
 
 
-
 
NC_011369  Rleg2_3042  binding-protein-dependent transport systems inner membrane component  32.69 
 
 
375 aa  116  5e-25  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_3099  binding-protein dependent transport system inner membrane protein  34.17 
 
 
261 aa  115  6e-25  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.578785 
 
 
-
 
NC_009667  Oant_0344  binding-protein-dependent transport systems inner membrane component  33.08 
 
 
286 aa  115  1.0000000000000001e-24  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.113814  n/a   
 
 
-
 
NC_011894  Mnod_2985  binding-protein-dependent transport systems inner membrane component  36.36 
 
 
273 aa  114  2.0000000000000002e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_2627  binding-protein-dependent transport systems inner membrane component  35.54 
 
 
288 aa  114  2.0000000000000002e-24  Actinosynnema mirum DSM 43827  Bacteria  normal  0.752734  n/a   
 
 
-
 
NC_013525  Tter_0403  binding-protein-dependent transport systems inner membrane component  33.82 
 
 
271 aa  113  4.0000000000000004e-24  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009636  Smed_2372  binding-protein-dependent transport systems inner membrane component  33.08 
 
 
289 aa  112  5e-24  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.239724 
 
 
-
 
NC_011365  Gdia_3269  binding-protein-dependent transport systems inner membrane component  37.93 
 
 
253 aa  112  6e-24  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.283078  normal 
 
 
-
 
NC_007643  Rru_A3455  binding-protein dependent transport system inner membrane protein  33.59 
 
 
322 aa  112  6e-24  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.833863  n/a   
 
 
-
 
NC_013223  Dret_2296  binding-protein-dependent transport systems inner membrane component  36.29 
 
 
250 aa  112  9e-24  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_3810  binding-protein-dependent transport systems inner membrane component  27.27 
 
 
258 aa  112  1.0000000000000001e-23  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.42897 
 
 
-
 
NC_010681  Bphyt_1488  binding-protein-dependent transport systems inner membrane component  37.39 
 
 
247 aa  111  1.0000000000000001e-23  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_2084  binding-protein-dependent transport systems inner membrane component  36.56 
 
 
260 aa  112  1.0000000000000001e-23  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.566245  n/a   
 
 
-
 
NC_012850  Rleg_3297  binding-protein-dependent transport systems inner membrane component  31.95 
 
 
375 aa  111  1.0000000000000001e-23  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.149558 
 
 
-
 
NC_009952  Dshi_2545  binding-protein-dependent transport system protein  32.67 
 
 
287 aa  111  1.0000000000000001e-23  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.240068  normal  0.521676 
 
 
-
 
NC_013173  Dbac_0926  binding-protein-dependent transport systems inner membrane component  36.15 
 
 
249 aa  111  1.0000000000000001e-23  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.04587  n/a   
 
 
-
 
NC_007963  Csal_1933  binding-protein-dependent transport systems inner membrane component  34.32 
 
 
255 aa  111  2.0000000000000002e-23  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.323499  n/a   
 
 
-
 
NC_009921  Franean1_3131  binding-protein-dependent transport systems inner membrane component  30.66 
 
 
281 aa  110  2.0000000000000002e-23  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_2703  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
263 aa  110  3e-23  Marinomonas sp. MWYL1  Bacteria  normal  0.88688  normal 
 
 
-
 
NC_011831  Cagg_2734  binding-protein-dependent transport systems inner membrane component  37.37 
 
 
267 aa  110  4.0000000000000004e-23  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.549296  normal 
 
 
-
 
NC_011830  Dhaf_0877  binding-protein-dependent transport systems inner membrane component  33.2 
 
 
260 aa  109  6e-23  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.00000000112184  n/a   
 
 
-
 
NC_013457  VEA_000865  hydroxymethylpyrimidine ABC transporter transmembrane component  34.14 
 
 
266 aa  108  8.000000000000001e-23  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_06840  ABC-type nitrate/sulfonate/bicarbonate transport system permease component  34.14 
 
 
266 aa  108  9.000000000000001e-23  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013515  Smon_0476  binding-protein-dependent transport systems inner membrane component  27 
 
 
249 aa  107  1e-22  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_009767  Rcas_0666  binding-protein-dependent transport systems inner membrane component  38.04 
 
 
272 aa  108  1e-22  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0770  binding-protein-dependent transport systems inner membrane component  35.14 
 
 
273 aa  107  2e-22  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_013743  Htur_0667  binding-protein-dependent transport systems inner membrane component  32.96 
 
 
299 aa  107  2e-22  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_008709  Ping_2376  ABC transporter substrate binding inner membrane protein  32.02 
 
 
265 aa  107  2e-22  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_0259  binding-protein-dependent transport systems inner membrane component  34.22 
 
 
453 aa  107  3e-22  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1221  binding-protein-dependent transport systems inner membrane component  32.03 
 
 
246 aa  106  4e-22  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_012791  Vapar_0620  binding-protein-dependent transport systems inner membrane component  34.33 
 
 
258 aa  106  4e-22  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007494  RSP_3166  ABC transporter, inner membrane subunit  36.09 
 
 
281 aa  105  6e-22  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009050  Rsph17029_3904  binding-protein-dependent transport systems inner membrane component  36.09 
 
 
281 aa  105  6e-22  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_0669  binding-protein-dependent transport systems inner membrane component  37.45 
 
 
272 aa  105  6e-22  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0848141 
 
 
-
 
NC_013203  Apar_0391  binding-protein-dependent transport systems inner membrane component  31.64 
 
 
257 aa  105  7e-22  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_1308  binding-protein-dependent transport systems inner membrane component  41.45 
 
 
254 aa  105  7e-22  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.0000169849 
 
 
-
 
NC_009674  Bcer98_0614  binding-protein-dependent transport systems inner membrane component  32.94 
 
 
250 aa  105  8e-22  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1151  binding-protein-dependent transport systems inner membrane component  31.62 
 
 
254 aa  105  8e-22  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_1076  ABC transporter-like protein  35.74 
 
 
488 aa  105  8e-22  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.276573 
 
 
-
 
NC_007493  RSP_0180  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  34.5 
 
 
283 aa  105  9e-22  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.105797  n/a   
 
 
-
 
NC_013946  Mrub_1883  binding-protein-dependent transport systems inner membrane component  32.68 
 
 
322 aa  105  1e-21  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.167871 
 
 
-
 
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