More than 300 homologs were found in PanDaTox collection
for query gene RPC_0572 on replicon NC_007925
Organism: Rhodopseudomonas palustris BisB18



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007925  RPC_0572  binding-protein-dependent transport systems inner membrane component  100 
 
 
276 aa  526  1e-148  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0258  binding-protein-dependent transport systems inner membrane component  81.85 
 
 
274 aa  371  1e-102  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.750925 
 
 
-
 
NC_011004  Rpal_0469  binding-protein-dependent transport systems inner membrane component  81.68 
 
 
274 aa  363  1e-99  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.858995  n/a   
 
 
-
 
NC_007964  Nham_0427  binding-protein-dependent transport systems inner membrane component  77.57 
 
 
279 aa  362  4e-99  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_0333  binding-protein dependent transport system inner membrane protein  81.18 
 
 
278 aa  361  7.0000000000000005e-99  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_0572  binding-protein-dependent transport systems inner membrane component  86.61 
 
 
274 aa  335  2.9999999999999997e-91  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0627389  normal  0.343483 
 
 
-
 
NC_009485  BBta_7480  ABC transporter permease  78.73 
 
 
271 aa  334  1e-90  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.477102  normal  0.131238 
 
 
-
 
NC_007802  Jann_1473  binding-protein-dependent transport systems inner membrane component  56.2 
 
 
283 aa  288  5.0000000000000004e-77  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_1382  binding-protein-dependent transport systems inner membrane component  57.3 
 
 
285 aa  273  3e-72  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.13305  normal 
 
 
-
 
NC_012848  Rleg_4665  binding-protein-dependent transport systems inner membrane component  54.71 
 
 
284 aa  271  8.000000000000001e-72  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.65192 
 
 
-
 
NC_008312  Tery_1625  binding-protein-dependent transport systems inner membrane component  50.18 
 
 
285 aa  266  2.9999999999999995e-70  Trichodesmium erythraeum IMS101  Bacteria  normal  0.0792607  normal  0.95709 
 
 
-
 
NC_011369  Rleg2_1676  binding-protein-dependent transport systems inner membrane component  55.07 
 
 
287 aa  264  1e-69  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  decreased coverage  0.00381914  normal 
 
 
-
 
NC_007953  Bxe_C0801  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  55 
 
 
298 aa  263  3e-69  Burkholderia xenovorans LB400  Bacteria  normal  0.0745387  normal 
 
 
-
 
NC_011989  Avi_3552  ABC transporter membrane spanning protein  52.63 
 
 
285 aa  262  4e-69  Agrobacterium vitis S4  Bacteria  normal  0.0625026  n/a   
 
 
-
 
NC_009719  Plav_0891  binding-protein-dependent transport systems inner membrane component  55.3 
 
 
268 aa  262  4e-69  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.223421 
 
 
-
 
NC_009668  Oant_3871  binding-protein-dependent transport systems inner membrane component  52.4 
 
 
280 aa  250  2e-65  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.208081  n/a   
 
 
-
 
NC_012791  Vapar_4760  binding-protein-dependent transport systems inner membrane component  47.13 
 
 
267 aa  246  3e-64  Variovorax paradoxus S110  Bacteria  normal  0.318809  n/a   
 
 
-
 
NC_011666  Msil_1164  binding-protein-dependent transport systems inner membrane component  62.11 
 
 
260 aa  240  2e-62  Methylocella silvestris BL2  Bacteria  n/a    normal  0.233018 
 
 
-
 
NC_012791  Vapar_5134  binding-protein-dependent transport systems inner membrane component  54.81 
 
 
294 aa  236  4e-61  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_1263  ABC transporter permease  47.47 
 
 
262 aa  234  2.0000000000000002e-60  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.165267 
 
 
-
 
NC_007951  Bxe_A2015  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  49.8 
 
 
252 aa  226  2e-58  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_1091  binding-protein-dependent transport systems inner membrane component  58.16 
 
 
262 aa  225  5.0000000000000005e-58  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A3414  ATP-binding protein of ABC transporter  52.78 
 
 
280 aa  224  9e-58  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.24016 
 
 
-
 
NC_008786  Veis_3145  binding-protein-dependent transport systems inner membrane component  57.63 
 
 
298 aa  222  7e-57  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.433007  normal  0.243208 
 
 
-
 
NC_010501  PputW619_2588  binding-protein-dependent transport systems inner membrane component  51.97 
 
 
267 aa  221  9e-57  Pseudomonas putida W619  Bacteria  normal  normal  0.417353 
 
 
-
 
NC_002947  PP_3210  ABC transporter, permease protein  51.57 
 
 
267 aa  218  7e-56  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_2038  binding-protein-dependent transport systems inner membrane component  47.41 
 
 
264 aa  211  7.999999999999999e-54  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.697058  normal  0.743835 
 
 
-
 
NC_010725  Mpop_1095  binding-protein-dependent transport systems inner membrane component  49.57 
 
 
264 aa  211  9e-54  Methylobacterium populi BJ001  Bacteria  normal  0.0240883  normal  0.166534 
 
 
-
 
NC_010172  Mext_1719  binding-protein-dependent transport systems inner membrane component  47.41 
 
 
264 aa  211  1e-53  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_009484  Acry_0832  binding-protein-dependent transport systems inner membrane component  54.95 
 
 
254 aa  181  8.000000000000001e-45  Acidiphilium cryptum JF-5  Bacteria  normal  0.404323  n/a   
 
 
-
 
NC_014148  Plim_2867  binding-protein-dependent transport systems inner membrane component  35.29 
 
 
277 aa  159  7e-38  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_1393  binding-protein-dependent transport systems inner membrane component  36.44 
 
 
254 aa  146  3e-34  Meiothermus ruber DSM 1279  Bacteria  normal  0.302994  normal  0.157809 
 
 
-
 
NC_013440  Hoch_2033  binding-protein-dependent transport systems inner membrane component  44.35 
 
 
275 aa  144  1e-33  Haliangium ochraceum DSM 14365  Bacteria  normal  0.0253714  normal  0.258175 
 
 
-
 
NC_012791  Vapar_1862  binding-protein-dependent transport systems inner membrane component  35.29 
 
 
257 aa  142  6e-33  Variovorax paradoxus S110  Bacteria  normal  0.116723  n/a   
 
 
-
 
NC_008786  Veis_0620  binding-protein-dependent transport systems inner membrane component  37.87 
 
 
254 aa  142  6e-33  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.63161  normal 
 
 
-
 
NC_012792  Vapar_6052  binding-protein-dependent transport systems inner membrane component  37.29 
 
 
274 aa  136  4e-31  Variovorax paradoxus S110  Bacteria  normal  0.0454164  n/a   
 
 
-
 
NC_011989  Avi_3460  ABC transporter membrane spanning protein  35.66 
 
 
288 aa  135  5e-31  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_1260  binding-protein-dependent transport systems inner membrane component  41.99 
 
 
252 aa  135  7.000000000000001e-31  Caulobacter sp. K31  Bacteria  normal  0.21476  normal  0.0147088 
 
 
-
 
NC_011369  Rleg2_3042  binding-protein-dependent transport systems inner membrane component  35.02 
 
 
375 aa  133  3.9999999999999996e-30  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_1494  binding-protein-dependent transport systems inner membrane component  35.52 
 
 
281 aa  128  1.0000000000000001e-28  Ruegeria sp. TM1040  Bacteria  normal  0.58323  normal 
 
 
-
 
NC_007802  Jann_3753  binding-protein-dependent transport systems inner membrane component  31.37 
 
 
268 aa  127  2.0000000000000002e-28  Jannaschia sp. CCS1  Bacteria  normal  0.333865  normal 
 
 
-
 
NC_013521  Sked_17280  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  37.44 
 
 
325 aa  127  2.0000000000000002e-28  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.158115  normal  0.544115 
 
 
-
 
NC_009921  Franean1_3131  binding-protein-dependent transport systems inner membrane component  34.47 
 
 
281 aa  125  8.000000000000001e-28  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_3112  binding-protein-dependent transport systems inner membrane component  40.16 
 
 
253 aa  125  1e-27  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0371548 
 
 
-
 
NC_009952  Dshi_1373  binding-protein-dependent transport systems inner membrane component  34.31 
 
 
303 aa  124  1e-27  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.674946  normal  0.833857 
 
 
-
 
NC_008254  Meso_2046  binding-protein-dependent transport systems inner membrane component  34.44 
 
 
286 aa  124  1e-27  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0344  binding-protein-dependent transport systems inner membrane component  33.72 
 
 
286 aa  124  1e-27  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.113814  n/a   
 
 
-
 
NC_012850  Rleg_3297  binding-protein-dependent transport systems inner membrane component  32.68 
 
 
375 aa  124  2e-27  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.149558 
 
 
-
 
NC_009952  Dshi_2545  binding-protein-dependent transport system protein  33.86 
 
 
287 aa  123  3e-27  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.240068  normal  0.521676 
 
 
-
 
NC_009720  Xaut_3758  binding-protein-dependent transport systems inner membrane component  32.43 
 
 
256 aa  123  3e-27  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_0259  binding-protein-dependent transport systems inner membrane component  35.71 
 
 
453 aa  122  5e-27  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2372  binding-protein-dependent transport systems inner membrane component  35.74 
 
 
289 aa  122  7e-27  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.239724 
 
 
-
 
NC_014210  Ndas_4504  binding-protein-dependent transport systems inner membrane component  39.53 
 
 
281 aa  122  7e-27  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_007509  Bcep18194_C7650  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  38.33 
 
 
247 aa  122  8e-27  Burkholderia sp. 383  Bacteria  normal  0.621765  normal 
 
 
-
 
NC_012669  Bcav_3788  binding-protein-dependent transport systems inner membrane component  37.85 
 
 
317 aa  121  9.999999999999999e-27  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0255815  normal 
 
 
-
 
NC_007494  RSP_3166  ABC transporter, inner membrane subunit  37.66 
 
 
281 aa  120  1.9999999999999998e-26  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_2296  binding-protein-dependent transport systems inner membrane component  37.7 
 
 
250 aa  120  1.9999999999999998e-26  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_009050  Rsph17029_3904  binding-protein-dependent transport systems inner membrane component  37.24 
 
 
281 aa  120  1.9999999999999998e-26  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_4254  binding-protein-dependent transport systems inner membrane component  31.1 
 
 
283 aa  120  3e-26  Conexibacter woesei DSM 14684  Bacteria  normal  0.0441349  normal  0.902161 
 
 
-
 
NC_013521  Sked_02100  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  36 
 
 
308 aa  120  3e-26  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_3118  binding-protein dependent transport system inner membrane protein  33.33 
 
 
284 aa  119  3.9999999999999996e-26  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009669  Oant_4580  binding-protein-dependent transport systems inner membrane component  34.83 
 
 
257 aa  119  4.9999999999999996e-26  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_2985  binding-protein-dependent transport systems inner membrane component  34.29 
 
 
273 aa  119  6e-26  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0770  binding-protein-dependent transport systems inner membrane component  35.37 
 
 
273 aa  119  6e-26  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_3205  binding-protein-dependent transport systems inner membrane component  35.74 
 
 
265 aa  119  6e-26  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.000457845  n/a   
 
 
-
 
NC_007778  RPB_3093  binding-protein dependent transport system inner membrane protein  35.48 
 
 
259 aa  118  9e-26  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.942666 
 
 
-
 
NC_009485  BBta_1169  putative ABC transporter permease protein  36.8 
 
 
279 aa  118  9e-26  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_2281  binding-protein-dependent transport systems inner membrane component  32.43 
 
 
281 aa  117  1.9999999999999998e-25  Frankia sp. EAN1pec  Bacteria  normal  0.695693  normal  0.331928 
 
 
-
 
NC_013739  Cwoe_3810  binding-protein-dependent transport systems inner membrane component  29.44 
 
 
258 aa  117  3e-25  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.42897 
 
 
-
 
NC_011894  Mnod_3419  binding-protein-dependent transport systems inner membrane component  34.55 
 
 
258 aa  116  3.9999999999999997e-25  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.121812  n/a   
 
 
-
 
NC_009012  Cthe_2116  binding-protein-dependent transport systems inner membrane component  30.04 
 
 
253 aa  116  5e-25  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_7629  putative ABC transporter permease protein  34.7 
 
 
282 aa  115  6.9999999999999995e-25  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.262472  normal  0.441686 
 
 
-
 
NC_007643  Rru_A3455  binding-protein dependent transport system inner membrane protein  33.84 
 
 
322 aa  114  2.0000000000000002e-24  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.833863  n/a   
 
 
-
 
NC_012791  Vapar_0620  binding-protein-dependent transport systems inner membrane component  34.43 
 
 
258 aa  114  2.0000000000000002e-24  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_0180  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  35.02 
 
 
283 aa  113  3e-24  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.105797  n/a   
 
 
-
 
NC_007778  RPB_3099  binding-protein dependent transport system inner membrane protein  33.33 
 
 
261 aa  113  3e-24  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.578785 
 
 
-
 
NC_013165  Shel_13670  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  34 
 
 
249 aa  113  3e-24  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_1813  binding-protein-dependent transport systems inner membrane component  35.41 
 
 
283 aa  113  3e-24  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.210707  normal  0.296576 
 
 
-
 
NC_009654  Mmwyl1_2703  binding-protein-dependent transport systems inner membrane component  33.63 
 
 
263 aa  112  5e-24  Marinomonas sp. MWYL1  Bacteria  normal  0.88688  normal 
 
 
-
 
NC_010184  BcerKBAB4_0643  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
251 aa  111  1.0000000000000001e-23  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0797  ABC transporter, permease protein, putative  33.33 
 
 
250 aa  110  2.0000000000000002e-23  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2099  binding-protein-dependent transport systems inner membrane component  34.76 
 
 
306 aa  110  2.0000000000000002e-23  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_1488  binding-protein-dependent transport systems inner membrane component  35.37 
 
 
247 aa  110  2.0000000000000002e-23  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_1465  binding-protein-dependent transport systems inner membrane component  33.98 
 
 
283 aa  110  2.0000000000000002e-23  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A0784  putative ABC transporter, permease protein  32.92 
 
 
250 aa  110  2.0000000000000002e-23  Bacillus cereus B4264  Bacteria  normal  0.605831  n/a   
 
 
-
 
NC_013093  Amir_4887  binding-protein-dependent transport systems inner membrane component  35.51 
 
 
267 aa  110  3e-23  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6031  putative ABC transporter, permease protein  31.89 
 
 
325 aa  110  3e-23  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_3562  binding-protein-dependent transport systems inner membrane component  38.72 
 
 
263 aa  109  4.0000000000000004e-23  Opitutus terrae PB90-1  Bacteria  normal  0.120198  normal  0.916816 
 
 
-
 
NC_005945  BAS0693  ABC transporter permease  32.11 
 
 
250 aa  109  6e-23  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0637  ABC transporter, permease  32.1 
 
 
250 aa  109  6e-23  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4547  putative ABC transporter, permease protein  32.51 
 
 
251 aa  109  6e-23  Bacillus cereus G9842  Bacteria  normal  0.113137  normal  0.441246 
 
 
-
 
NC_007530  GBAA_0727  ABC transporter permease  32.11 
 
 
250 aa  109  6e-23  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0363276  n/a   
 
 
-
 
NC_008254  Meso_0814  binding-protein-dependent transport systems inner membrane component  34.76 
 
 
270 aa  108  7.000000000000001e-23  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0804  putative ABC transporter, permease protein  32.1 
 
 
250 aa  108  7.000000000000001e-23  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.22036e-46 
 
 
-
 
NC_010623  Bphy_3181  binding-protein-dependent transport systems inner membrane component  34.9 
 
 
277 aa  108  8.000000000000001e-23  Burkholderia phymatum STM815  Bacteria  normal  0.0283642  normal 
 
 
-
 
NC_008148  Rxyl_2084  binding-protein-dependent transport systems inner membrane component  38.94 
 
 
260 aa  108  9.000000000000001e-23  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.566245  n/a   
 
 
-
 
NC_005957  BT9727_0637  ABC transporter, permease  32.11 
 
 
250 aa  108  1e-22  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00537874  n/a   
 
 
-
 
NC_013093  Amir_2627  binding-protein-dependent transport systems inner membrane component  33.89 
 
 
288 aa  107  2e-22  Actinosynnema mirum DSM 43827  Bacteria  normal  0.752734  n/a   
 
 
-
 
NC_011830  Dhaf_0877  binding-protein-dependent transport systems inner membrane component  31.08 
 
 
260 aa  107  2e-22  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.00000000112184  n/a   
 
 
-
 
NC_011658  BCAH187_A0881  putative ABC transporter, permease protein  32.51 
 
 
251 aa  107  2e-22  Bacillus cereus AH187  Bacteria  hitchhiker  0.00328051  n/a   
 
 
-
 
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