| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_3562 |
|---|
| Symbol | |
|---|
| ID | 6205355 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 4638043 |
|---|
| End bp | 4638834 |
|---|
| Gene Length | 792 bp |
|---|
| Protein Length | 263 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641693230 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001820439 |
|---|
| Protein GI | 182415373 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0600] ABC-type nitrate/sulfonate/bicarbonate transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.120198 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.916816 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCGCC GCCTGCTACC TTTGCTGCTC ACCGTCGCGA CGGGCGTCGC GTTCGTGGCG
CTGTGGTATG GCGTACACTT CTGGCTCAGC GAGGACAGTC GGTTCCTGCT GCCTGCGCCC
GACGCCGTTC TTCGCGCTTT CGGCGAATAC CGAACCGATC TCGTTCGCGC CACGCTCAAT
ACCGTTTACG GTGCGCTGCT CGGCTTCGCG CTGGCGATCG GCGTCAGCAT CCTCGCTGCG
GTGGTACTGT CGCTCTCTCC CATCGTTCGG ATCAGCCTGT ATCCTTATCT GATGCTGCTG
CAGATGACGC CGATCATCAT CGCCGCCCCG ATCCTGATCC TCTGGGTCGG CCCGGGCCTG
CCGAGCGTCG TGTTGATCAC GTTCCTGATT TGTTTCTTTC CCTTGGCGGT GAACACCACC
CAGGGCCTCG TCTCGACCGA CCGCAACCTC GTCGATCTTT TTCGGATGTG GCGCGCATCG
CGTTTCCAAC AGCTGGTGTT GCTGCGCCTG CCCGCGGCCC TGCCGTATTT CTTCACCGGC
TTGCGGATCG CCGCCACGCT CGCGCCGATC GGCGCGCTGG TGGGCGATTA CACCGCCGGC
AGTTCCGCGG GCGATGGCGG CGGGCTCGGA TTTCAAGCCT TGATCTATTC GAGCCAGGCG
AAATACGCCG CGCTCTTCGC CACCGCCGCG GTCACGTGCG TGCTCGGCTT CGTCTTCGTC
GGCTTCGTGC TCGGCGCAAG CCGGCTCGCG CTTCGTCACT GGCACGACTC CTTCGACCCC
GCCGACAAAT AG
|
|---|
| Protein sequence | MPRRLLPLLL TVATGVAFVA LWYGVHFWLS EDSRFLLPAP DAVLRAFGEY RTDLVRATLN
TVYGALLGFA LAIGVSILAA VVLSLSPIVR ISLYPYLMLL QMTPIIIAAP ILILWVGPGL
PSVVLITFLI CFFPLAVNTT QGLVSTDRNL VDLFRMWRAS RFQQLVLLRL PAALPYFFTG
LRIAATLAPI GALVGDYTAG SSAGDGGGLG FQALIYSSQA KYAALFATAA VTCVLGFVFV
GFVLGASRLA LRHWHDSFDP ADK
|
|---|
| |