More than 300 homologs were found in PanDaTox collection
for query gene Rru_A3455 on replicon NC_007643
Organism: Rhodospirillum rubrum ATCC 11170



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007643  Rru_A3455  binding-protein dependent transport system inner membrane protein  100 
 
 
322 aa  619  1e-176  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.833863  n/a   
 
 
-
 
NC_011989  Avi_3460  ABC transporter membrane spanning protein  64.55 
 
 
288 aa  335  7.999999999999999e-91  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2372  binding-protein-dependent transport systems inner membrane component  62.37 
 
 
289 aa  328  9e-89  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.239724 
 
 
-
 
NC_008254  Meso_2046  binding-protein-dependent transport systems inner membrane component  66.4 
 
 
286 aa  318  7e-86  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0344  binding-protein-dependent transport systems inner membrane component  61.75 
 
 
286 aa  317  2e-85  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.113814  n/a   
 
 
-
 
NC_012850  Rleg_3297  binding-protein-dependent transport systems inner membrane component  59.56 
 
 
375 aa  314  9.999999999999999e-85  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.149558 
 
 
-
 
NC_011369  Rleg2_3042  binding-protein-dependent transport systems inner membrane component  58.82 
 
 
375 aa  310  2e-83  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_6031  putative ABC transporter, permease protein  63.6 
 
 
325 aa  306  3e-82  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_1494  binding-protein-dependent transport systems inner membrane component  61.94 
 
 
281 aa  303  3.0000000000000004e-81  Ruegeria sp. TM1040  Bacteria  normal  0.58323  normal 
 
 
-
 
NC_009952  Dshi_1373  binding-protein-dependent transport systems inner membrane component  59.76 
 
 
303 aa  292  5e-78  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.674946  normal  0.833857 
 
 
-
 
NC_009428  Rsph17025_1465  binding-protein-dependent transport systems inner membrane component  61.45 
 
 
283 aa  288  9e-77  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_2700  binding-protein-dependent transport systems inner membrane component  63.11 
 
 
316 aa  287  2e-76  Jannaschia sp. CCS1  Bacteria  normal  0.505407  normal  0.565906 
 
 
-
 
NC_011757  Mchl_2050  binding-protein-dependent transport systems inner membrane component  65.87 
 
 
321 aa  285  7e-76  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.577348 
 
 
-
 
NC_007493  RSP_0180  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  61.45 
 
 
283 aa  284  1.0000000000000001e-75  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.105797  n/a   
 
 
-
 
NC_009049  Rsph17029_1813  binding-protein-dependent transport systems inner membrane component  61.45 
 
 
283 aa  283  2.0000000000000002e-75  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.210707  normal  0.296576 
 
 
-
 
NC_010725  Mpop_1083  binding-protein-dependent transport systems inner membrane component  66.27 
 
 
321 aa  283  3.0000000000000004e-75  Methylobacterium populi BJ001  Bacteria  normal  0.148611  normal  0.032179 
 
 
-
 
NC_010172  Mext_1731  binding-protein-dependent transport systems inner membrane component  67.89 
 
 
321 aa  283  3.0000000000000004e-75  Methylobacterium extorquens PA1  Bacteria  normal  0.443029  normal 
 
 
-
 
NC_012880  Dd703_0037  binding-protein-dependent transport systems inner membrane component  53.27 
 
 
362 aa  282  5.000000000000001e-75  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_1883  binding-protein-dependent transport systems inner membrane component  50.87 
 
 
322 aa  214  9.999999999999999e-55  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.167871 
 
 
-
 
NC_014212  Mesil_2099  binding-protein-dependent transport systems inner membrane component  47.35 
 
 
306 aa  202  5e-51  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_1221  binding-protein-dependent transport systems inner membrane component  35.39 
 
 
246 aa  146  5e-34  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013739  Cwoe_4254  binding-protein-dependent transport systems inner membrane component  38.33 
 
 
283 aa  145  1e-33  Conexibacter woesei DSM 14684  Bacteria  normal  0.0441349  normal  0.902161 
 
 
-
 
NC_007802  Jann_3753  binding-protein-dependent transport systems inner membrane component  34.68 
 
 
268 aa  136  5e-31  Jannaschia sp. CCS1  Bacteria  normal  0.333865  normal 
 
 
-
 
NC_009485  BBta_1169  putative ABC transporter permease protein  35.29 
 
 
279 aa  135  9e-31  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_0891  binding-protein-dependent transport systems inner membrane component  35.66 
 
 
268 aa  133  3.9999999999999996e-30  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.223421 
 
 
-
 
NC_007778  RPB_3118  binding-protein dependent transport system inner membrane protein  36.4 
 
 
284 aa  133  3.9999999999999996e-30  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_3099  binding-protein dependent transport system inner membrane protein  33.76 
 
 
261 aa  131  1.0000000000000001e-29  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.578785 
 
 
-
 
NC_011988  Avi_5406  ABC transporter membrane spanning protein  34.93 
 
 
251 aa  131  1.0000000000000001e-29  Agrobacterium vitis S4  Bacteria  normal  0.408693  n/a   
 
 
-
 
NC_013165  Shel_13670  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  34.15 
 
 
249 aa  130  4.0000000000000003e-29  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1719  binding-protein-dependent transport systems inner membrane component  34.67 
 
 
264 aa  126  5e-28  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_2985  binding-protein-dependent transport systems inner membrane component  33.9 
 
 
273 aa  126  5e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_2038  binding-protein-dependent transport systems inner membrane component  34.22 
 
 
264 aa  126  6e-28  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.697058  normal  0.743835 
 
 
-
 
NC_009921  Franean1_3131  binding-protein-dependent transport systems inner membrane component  34.63 
 
 
281 aa  125  9e-28  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_3205  binding-protein-dependent transport systems inner membrane component  33.77 
 
 
265 aa  124  3e-27  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.000457845  n/a   
 
 
-
 
NC_009485  BBta_7629  putative ABC transporter permease protein  34.91 
 
 
282 aa  123  4e-27  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.262472  normal  0.441686 
 
 
-
 
NC_012791  Vapar_1862  binding-protein-dependent transport systems inner membrane component  31.17 
 
 
257 aa  123  4e-27  Variovorax paradoxus S110  Bacteria  normal  0.116723  n/a   
 
 
-
 
NC_011773  BCAH820_0804  putative ABC transporter, permease protein  31.36 
 
 
250 aa  122  7e-27  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.22036e-46 
 
 
-
 
NC_005945  BAS0693  ABC transporter permease  31.36 
 
 
250 aa  122  9.999999999999999e-27  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0637  ABC transporter, permease  31.36 
 
 
250 aa  122  9.999999999999999e-27  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00537874  n/a   
 
 
-
 
NC_006274  BCZK0637  ABC transporter, permease  31.36 
 
 
250 aa  121  9.999999999999999e-27  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0727  ABC transporter permease  31.36 
 
 
250 aa  122  9.999999999999999e-27  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0363276  n/a   
 
 
-
 
NC_013223  Dret_2296  binding-protein-dependent transport systems inner membrane component  35.62 
 
 
250 aa  120  1.9999999999999998e-26  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3934  binding-protein-dependent transport systems inner membrane component  33.47 
 
 
278 aa  121  1.9999999999999998e-26  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.421742  normal 
 
 
-
 
NC_010184  BcerKBAB4_0643  binding-protein-dependent transport systems inner membrane component  31.36 
 
 
251 aa  120  3e-26  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2703  binding-protein-dependent transport systems inner membrane component  31.45 
 
 
263 aa  120  3e-26  Marinomonas sp. MWYL1  Bacteria  normal  0.88688  normal 
 
 
-
 
NC_013515  Smon_0476  binding-protein-dependent transport systems inner membrane component  29.79 
 
 
249 aa  120  3.9999999999999996e-26  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_011725  BCB4264_A0784  putative ABC transporter, permease protein  30.93 
 
 
250 aa  120  3.9999999999999996e-26  Bacillus cereus B4264  Bacteria  normal  0.605831  n/a   
 
 
-
 
NC_009486  Tpet_0435  binding-protein-dependent transport systems inner membrane component  31.2 
 
 
250 aa  119  6e-26  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4547  putative ABC transporter, permease protein  30.93 
 
 
251 aa  119  7e-26  Bacillus cereus G9842  Bacteria  normal  0.113137  normal  0.441246 
 
 
-
 
NC_003909  BCE_0797  ABC transporter, permease protein, putative  30.93 
 
 
250 aa  119  7.999999999999999e-26  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0403  binding-protein-dependent transport systems inner membrane component  30.9 
 
 
271 aa  119  7.999999999999999e-26  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009669  Oant_4580  binding-protein-dependent transport systems inner membrane component  33.19 
 
 
257 aa  119  9e-26  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_012792  Vapar_6052  binding-protein-dependent transport systems inner membrane component  31.03 
 
 
274 aa  118  9.999999999999999e-26  Variovorax paradoxus S110  Bacteria  normal  0.0454164  n/a   
 
 
-
 
NC_011658  BCAH187_A0881  putative ABC transporter, permease protein  30.93 
 
 
251 aa  119  9.999999999999999e-26  Bacillus cereus AH187  Bacteria  hitchhiker  0.00328051  n/a   
 
 
-
 
NC_007963  Csal_1933  binding-protein-dependent transport systems inner membrane component  34.47 
 
 
255 aa  117  1.9999999999999998e-25  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.323499  n/a   
 
 
-
 
NC_008148  Rxyl_2084  binding-protein-dependent transport systems inner membrane component  37.78 
 
 
260 aa  118  1.9999999999999998e-25  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.566245  n/a   
 
 
-
 
NC_010725  Mpop_1095  binding-protein-dependent transport systems inner membrane component  33.64 
 
 
264 aa  117  3e-25  Methylobacterium populi BJ001  Bacteria  normal  0.0240883  normal  0.166534 
 
 
-
 
NC_013743  Htur_0667  binding-protein-dependent transport systems inner membrane component  38.43 
 
 
299 aa  117  3.9999999999999997e-25  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_009674  Bcer98_0614  binding-protein-dependent transport systems inner membrane component  30.08 
 
 
250 aa  116  3.9999999999999997e-25  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_0620  binding-protein-dependent transport systems inner membrane component  30.4 
 
 
254 aa  116  5e-25  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.63161  normal 
 
 
-
 
NC_013235  Namu_1668  binding-protein-dependent transport systems inner membrane component  32.2 
 
 
288 aa  115  8.999999999999998e-25  Nakamurella multipartita DSM 44233  Bacteria  normal  0.173855  normal  0.365472 
 
 
-
 
NC_010483  TRQ2_0450  binding-protein-dependent transport systems inner membrane component  33.8 
 
 
222 aa  115  1.0000000000000001e-24  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_0333  binding-protein dependent transport system inner membrane protein  34.69 
 
 
278 aa  114  2.0000000000000002e-24  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_3112  binding-protein-dependent transport systems inner membrane component  36.71 
 
 
253 aa  114  2.0000000000000002e-24  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0371548 
 
 
-
 
NC_011830  Dhaf_0877  binding-protein-dependent transport systems inner membrane component  31.2 
 
 
260 aa  114  3e-24  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.00000000112184  n/a   
 
 
-
 
NC_014148  Plim_2867  binding-protein-dependent transport systems inner membrane component  30.8 
 
 
277 aa  114  3e-24  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0926  binding-protein-dependent transport systems inner membrane component  33.63 
 
 
249 aa  114  3e-24  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.04587  n/a   
 
 
-
 
NC_011369  Rleg2_3645  binding-protein-dependent transport systems inner membrane component  33.88 
 
 
268 aa  113  5e-24  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_1263  ABC transporter permease  30.83 
 
 
262 aa  113  5e-24  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.165267 
 
 
-
 
NC_010511  M446_0770  binding-protein-dependent transport systems inner membrane component  34.32 
 
 
273 aa  112  6e-24  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_3116  binding-protein-dependent transport systems inner membrane component  35.37 
 
 
272 aa  112  7.000000000000001e-24  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.025765  normal 
 
 
-
 
NC_009767  Rcas_0666  binding-protein-dependent transport systems inner membrane component  34.78 
 
 
272 aa  112  9e-24  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_3810  binding-protein-dependent transport systems inner membrane component  31 
 
 
258 aa  112  1.0000000000000001e-23  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.42897 
 
 
-
 
NC_007778  RPB_3093  binding-protein dependent transport system inner membrane protein  31.36 
 
 
259 aa  111  2.0000000000000002e-23  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.942666 
 
 
-
 
NC_014210  Ndas_4504  binding-protein-dependent transport systems inner membrane component  33 
 
 
281 aa  110  2.0000000000000002e-23  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_0427  binding-protein-dependent transport systems inner membrane component  32.97 
 
 
279 aa  110  2.0000000000000002e-23  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_2588  binding-protein-dependent transport systems inner membrane component  34.38 
 
 
267 aa  110  3e-23  Pseudomonas putida W619  Bacteria  normal  normal  0.417353 
 
 
-
 
NC_008254  Meso_0814  binding-protein-dependent transport systems inner membrane component  30.74 
 
 
270 aa  110  3e-23  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A2015  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  33.33 
 
 
252 aa  110  4.0000000000000004e-23  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_4760  binding-protein-dependent transport systems inner membrane component  30.12 
 
 
267 aa  109  5e-23  Variovorax paradoxus S110  Bacteria  normal  0.318809  n/a   
 
 
-
 
NC_009012  Cthe_2116  binding-protein-dependent transport systems inner membrane component  31.44 
 
 
253 aa  109  5e-23  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_2574  binding-protein-dependent transport systems inner membrane component  34.62 
 
 
252 aa  110  5e-23  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_011365  Gdia_3269  binding-protein-dependent transport systems inner membrane component  37.74 
 
 
253 aa  110  5e-23  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.283078  normal 
 
 
-
 
NC_009720  Xaut_3758  binding-protein-dependent transport systems inner membrane component  29.84 
 
 
256 aa  109  6e-23  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_2627  binding-protein-dependent transport systems inner membrane component  32.91 
 
 
288 aa  108  8.000000000000001e-23  Actinosynnema mirum DSM 43827  Bacteria  normal  0.752734  n/a   
 
 
-
 
NC_009832  Spro_3124  binding-protein-dependent transport systems inner membrane component  34.98 
 
 
255 aa  108  1e-22  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_0620  binding-protein-dependent transport systems inner membrane component  31.91 
 
 
258 aa  108  1e-22  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007953  Bxe_C0801  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  31.91 
 
 
298 aa  108  2e-22  Burkholderia xenovorans LB400  Bacteria  normal  0.0745387  normal 
 
 
-
 
NC_010184  BcerKBAB4_0362  binding-protein-dependent transport systems inner membrane component  27.46 
 
 
255 aa  107  3e-22  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_17280  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  35.26 
 
 
325 aa  106  4e-22  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.158115  normal  0.544115 
 
 
-
 
NC_010623  Bphy_3181  binding-protein-dependent transport systems inner membrane component  28.46 
 
 
277 aa  107  4e-22  Burkholderia phymatum STM815  Bacteria  normal  0.0283642  normal 
 
 
-
 
NC_013517  Sterm_2064  binding-protein-dependent transport systems inner membrane component  28.88 
 
 
254 aa  106  5e-22  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.00112586  n/a   
 
 
-
 
NC_011831  Cagg_1308  binding-protein-dependent transport systems inner membrane component  35.45 
 
 
254 aa  106  6e-22  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.0000169849 
 
 
-
 
NC_013946  Mrub_1393  binding-protein-dependent transport systems inner membrane component  29.17 
 
 
254 aa  105  7e-22  Meiothermus ruber DSM 1279  Bacteria  normal  0.302994  normal  0.157809 
 
 
-
 
NC_009523  RoseRS_0669  binding-protein-dependent transport systems inner membrane component  35.19 
 
 
272 aa  105  9e-22  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0848141 
 
 
-
 
NC_007973  Rmet_0394  binding-protein-dependent transport systems inner membrane component  31.06 
 
 
259 aa  105  9e-22  Cupriavidus metallidurans CH34  Bacteria  normal  hitchhiker  0.00657833 
 
 
-
 
NC_002947  PP_3210  ABC transporter, permease protein  31.09 
 
 
267 aa  105  1e-21  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_012852  Rleg_6281  binding-protein-dependent transport systems inner membrane component  29.84 
 
 
256 aa  104  2e-21  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.783663  normal 
 
 
-
 
NC_010338  Caul_1260  binding-protein-dependent transport systems inner membrane component  37.28 
 
 
252 aa  104  2e-21  Caulobacter sp. K31  Bacteria  normal  0.21476  normal  0.0147088 
 
 
-
 
NC_012848  Rleg_4665  binding-protein-dependent transport systems inner membrane component  31.48 
 
 
284 aa  104  2e-21  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.65192 
 
 
-
 
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