More than 300 homologs were found in PanDaTox collection
for query gene Svir_31150 on replicon NC_013159
Organism: Saccharomonospora viridis DSM 43017



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013159  Svir_31150  ABC-type dipeptide transport system, periplasmic component  100 
 
 
622 aa  1242    Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_0760  extracellular solute-binding protein family 5  48.79 
 
 
566 aa  486  1e-136  Actinosynnema mirum DSM 43827  Bacteria  normal  0.010503  n/a   
 
 
-
 
NC_009338  Mflv_2164  extracellular solute-binding protein  36.74 
 
 
599 aa  328  1.0000000000000001e-88  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.10806 
 
 
-
 
NC_008146  Mmcs_4039  extracellular solute-binding protein  35.44 
 
 
624 aa  314  2.9999999999999996e-84  Mycobacterium sp. MCS  Bacteria  normal  0.668084  n/a   
 
 
-
 
NC_008705  Mkms_4114  extracellular solute-binding protein  35.44 
 
 
624 aa  314  2.9999999999999996e-84  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_4268  extracellular solute-binding protein  35.44 
 
 
624 aa  314  2.9999999999999996e-84  Mycobacterium sp. JLS  Bacteria  normal  normal  0.475057 
 
 
-
 
NC_008726  Mvan_4539  extracellular solute-binding protein  35.8 
 
 
608 aa  303  7.000000000000001e-81  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.874043 
 
 
-
 
NC_009565  TBFG_11191  lipoprotein lpqW  33.8 
 
 
635 aa  290  4e-77  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_3330  extracellular solute-binding protein family 5  34.38 
 
 
614 aa  274  4.0000000000000004e-72  Gordonia bronchialis DSM 43247  Bacteria  normal  0.424693  n/a   
 
 
-
 
NC_014158  Tpau_1145  extracellular solute-binding protein family 5  31.34 
 
 
622 aa  254  2.0000000000000002e-66  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.0845067  n/a   
 
 
-
 
NC_013235  Namu_4315  extracellular solute-binding protein family 5  36.83 
 
 
603 aa  225  2e-57  Nakamurella multipartita DSM 44233  Bacteria  normal  0.0499363  normal 
 
 
-
 
NC_014165  Tbis_2402  extracellular solute-binding protein family 5  27.75 
 
 
566 aa  138  3.0000000000000003e-31  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.951994 
 
 
-
 
NC_013510  Tcur_3275  extracellular solute-binding protein family 5  27.44 
 
 
570 aa  136  9.999999999999999e-31  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0712739  n/a   
 
 
-
 
NC_013172  Bfae_08460  ABC-type dipeptide transport system, periplasmic component  27.68 
 
 
579 aa  127  7e-28  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_0818  peptide/nickel transport system substrate-binding protein  27.15 
 
 
568 aa  127  8.000000000000001e-28  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_1835  extracellular solute-binding protein  31.04 
 
 
563 aa  122  1.9999999999999998e-26  Chelativorans sp. BNC1  Bacteria  decreased coverage  0.00561184  n/a   
 
 
-
 
NC_013595  Sros_7096  ABC-type dipeptide transport system periplasmic component-like protein  24.88 
 
 
578 aa  120  7.999999999999999e-26  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1954  ABC-type dipeptide transport system periplasmic component-like protein  24.74 
 
 
567 aa  118  3.9999999999999997e-25  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.754029 
 
 
-
 
NC_008578  Acel_1116  extracellular solute-binding protein  29 
 
 
581 aa  117  3.9999999999999997e-25  Acidothermus cellulolyticus 11B  Bacteria  normal  0.749385  normal  0.0404913 
 
 
-
 
NC_013131  Caci_5593  extracellular solute-binding protein family 5  27.6 
 
 
567 aa  117  8.999999999999998e-25  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.38037 
 
 
-
 
NC_009338  Mflv_2258  extracellular solute-binding protein  26.37 
 
 
558 aa  111  5e-23  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.152339  normal 
 
 
-
 
NC_014210  Ndas_0536  extracellular solute-binding protein family 5  30.38 
 
 
565 aa  110  6e-23  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013721  HMPREF0424_1251  extracellular solute-binding protein  25.57 
 
 
580 aa  106  1e-21  Gardnerella vaginalis 409-05  Bacteria  n/a    hitchhiker  0.00147859 
 
 
-
 
NC_008726  Mvan_4433  extracellular solute-binding protein  26.03 
 
 
550 aa  105  2e-21  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.766057  normal 
 
 
-
 
NC_013441  Gbro_0619  extracellular solute-binding protein family 5  25.85 
 
 
551 aa  103  1e-20  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_7779  extracellular solute-binding protein family 5  27.22 
 
 
597 aa  102  3e-20  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.354248 
 
 
-
 
NC_009077  Mjls_3946  extracellular solute-binding protein  27.16 
 
 
554 aa  97.4  7e-19  Mycobacterium sp. JLS  Bacteria  normal  0.436412  normal  0.0739925 
 
 
-
 
NC_008146  Mmcs_3931  extracellular solute-binding protein  27.69 
 
 
555 aa  96.3  1e-18  Mycobacterium sp. MCS  Bacteria  normal  0.0539387  n/a   
 
 
-
 
NC_008705  Mkms_4005  extracellular solute-binding protein  27.69 
 
 
555 aa  96.3  1e-18  Mycobacterium sp. KMS  Bacteria  normal  0.326685  normal 
 
 
-
 
NC_009565  TBFG_11306  periplasmic oligopeptide-binding lipoprotein oppA  25.41 
 
 
591 aa  93.6  9e-18  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_0761  extracellular solute-binding protein family 5  30.46 
 
 
604 aa  93.2  1e-17  Actinosynnema mirum DSM 43827  Bacteria  normal  0.952848  n/a   
 
 
-
 
NC_008541  Arth_4014  extracellular solute-binding protein  23.67 
 
 
569 aa  89.7  2e-16  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_31140  ABC-type dipeptide transport system, periplasmic component  25.48 
 
 
586 aa  88.2  4e-16  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_012803  Mlut_15570  extracellular solute-binding protein, family 5  26.54 
 
 
619 aa  82.8  0.00000000000002  Micrococcus luteus NCTC 2665  Bacteria  normal  0.0497629  n/a   
 
 
-
 
NC_013131  Caci_8314  extracellular solute-binding protein family 5  25.1 
 
 
576 aa  82.4  0.00000000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.5259 
 
 
-
 
NC_013739  Cwoe_2501  extracellular solute-binding protein family 5  26.05 
 
 
608 aa  81.3  0.00000000000005  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_1633  putative solute-binding dependent transport lipoprotein  24.03 
 
 
585 aa  79  0.0000000000002  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3805  extracellular solute-binding protein family 5  22.9 
 
 
590 aa  79.3  0.0000000000002  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_008553  Mthe_0510  extracellular solute-binding protein  24.54 
 
 
510 aa  73.9  0.000000000008  Methanosaeta thermophila PT  Archaea  normal  0.0306064  n/a   
 
 
-
 
NC_005945  BAS0623  oligopeptide ABC transporter oligopeptide-binding protein  26.73 
 
 
593 aa  72.8  0.00000000002  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0570  extracellular solute-binding protein  27.81 
 
 
591 aa  72.8  0.00000000002  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_0328  extracellular solute-binding protein family 5  24.94 
 
 
540 aa  72.4  0.00000000002  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_007530  GBAA_0656  oligopeptide ABC transporter oligopeptide-binding protein  26.73 
 
 
593 aa  72.8  0.00000000002  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_0337  extracellular solute-binding protein family 5  22.16 
 
 
581 aa  72.4  0.00000000002  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011773  BCAH820_0713  oligopeptide ABC transporter, oligopeptide-binding protein  26.73 
 
 
593 aa  72.8  0.00000000002  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00303874 
 
 
-
 
NC_011658  BCAH187_A0785  oligopeptide ABC transporter, oligopeptide-binding protein  26.73 
 
 
593 aa  72  0.00000000003  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0551  extracellular solute-binding protein  27.36 
 
 
591 aa  72  0.00000000003  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_0785  extracellular solute-binding protein family 5  22.47 
 
 
600 aa  72  0.00000000003  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_010718  Nther_2906  extracellular solute-binding protein family 5  25 
 
 
574 aa  71.6  0.00000000004  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_4611  extracellular solute-binding protein family 5  27.17 
 
 
553 aa  71.2  0.00000000005  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.596915 
 
 
-
 
NC_003909  BCE_0724  oligopeptide ABC transporter, oligopeptide-binding protein  26.73 
 
 
593 aa  71.2  0.00000000006  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_1169  oligopeptide-binding protein of oligopeptide ABC transporter  24.55 
 
 
587 aa  71.2  0.00000000006  Synechococcus elongatus PCC 7942  Bacteria  normal  0.317639  normal 
 
 
-
 
NC_006274  BCZK0566  oligopeptide ABC transporter, oligopeptide-binding protein  26.73 
 
 
593 aa  70.9  0.00000000007  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_1988  ABC peptide transporter, periplasmic ligand binding protein  26.03 
 
 
505 aa  70.9  0.00000000008  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.693495  normal  0.584075 
 
 
-
 
NC_009485  BBta_5138  putative periplasmic peptide-binding protein ABC transporter  26.43 
 
 
495 aa  70.1  0.0000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0462348 
 
 
-
 
NC_014210  Ndas_0631  extracellular solute-binding protein family 5  26.72 
 
 
631 aa  69.3  0.0000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  decreased coverage  0.00116155  normal  0.250691 
 
 
-
 
NC_008148  Rxyl_0872  extracellular solute-binding protein  28.49 
 
 
541 aa  69.7  0.0000000002  Rubrobacter xylanophilus DSM 9941  Bacteria  decreased coverage  0.00426332  n/a   
 
 
-
 
NC_014248  Aazo_1172  family 1 extracellular solute-binding protein  24.38 
 
 
594 aa  69.7  0.0000000002  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_0477  extracellular solute-binding protein family 5  23.57 
 
 
573 aa  68.6  0.0000000004  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_014150  Bmur_1448  extracellular solute-binding protein family 5  25.62 
 
 
535 aa  68.2  0.0000000004  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1433  peptide ABC transporter, periplasmic peptide-binding protein  26.18 
 
 
538 aa  68.2  0.0000000005  Geobacter sulfurreducens PCA  Bacteria  normal  0.948157  n/a   
 
 
-
 
NC_014150  Bmur_2023  extracellular solute-binding protein family 5  23.47 
 
 
531 aa  67.4  0.0000000008  Brachyspira murdochii DSM 12563  Bacteria  normal  0.0292401  n/a   
 
 
-
 
NC_013235  Namu_4314  extracellular solute-binding protein family 5  20.87 
 
 
606 aa  67.4  0.0000000008  Nakamurella multipartita DSM 44233  Bacteria  normal  0.986199  normal 
 
 
-
 
NC_012793  GWCH70_1273  extracellular solute-binding protein family 5  26.26 
 
 
593 aa  67  0.000000001  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_008553  Mthe_0785  extracellular solute-binding protein  23.12 
 
 
512 aa  67  0.000000001  Methanosaeta thermophila PT  Archaea  normal  0.0600833  n/a   
 
 
-
 
NC_009012  Cthe_2961  extracellular solute-binding protein  25.98 
 
 
541 aa  66.6  0.000000001  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0567  oligopeptide ABC transporter, oligopeptide-binding protein  25.3 
 
 
592 aa  65.9  0.000000002  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_0093  extracellular solute-binding protein  23.84 
 
 
604 aa  66.2  0.000000002  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.503977 
 
 
-
 
NC_013515  Smon_0067  extracellular solute-binding protein family 5  23.9 
 
 
532 aa  66.2  0.000000002  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_004116  SAG0979  ABC transporter, substrate-binding protein  23.74 
 
 
553 aa  65.5  0.000000003  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_007355  Mbar_A0645  oligopeptide ABC transporter, solute-binding protein  24 
 
 
524 aa  65.1  0.000000003  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_013216  Dtox_0343  extracellular solute-binding protein family 5  23.45 
 
 
537 aa  65.1  0.000000003  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_4285  extracellular solute-binding protein  26.02 
 
 
530 aa  65.5  0.000000003  Paracoccus denitrificans PD1222  Bacteria  normal  0.261799  normal  0.839381 
 
 
-
 
NC_011757  Mchl_0387  extracellular solute-binding protein family 5  27.18 
 
 
637 aa  65.1  0.000000004  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.111911  normal  0.651599 
 
 
-
 
NC_013552  DhcVS_1270  ABC-type dipeptide transport system, periplasmic component  22.65 
 
 
542 aa  64.7  0.000000005  Dehalococcoides sp. VS  Bacteria  normal  0.593504  n/a   
 
 
-
 
NC_013552  DhcVS_932  ABC-type oligopeptide transport system, periplasmic component  25.16 
 
 
558 aa  64.7  0.000000005  Dehalococcoides sp. VS  Bacteria  decreased coverage  0.00000268358  n/a   
 
 
-
 
NC_013739  Cwoe_2945  extracellular solute-binding protein family 5  27.19 
 
 
565 aa  64.7  0.000000005  Conexibacter woesei DSM 14684  Bacteria  normal  0.472455  normal  0.0524757 
 
 
-
 
NC_007517  Gmet_1234  extracellular solute-binding protein  26.67 
 
 
538 aa  64.3  0.000000006  Geobacter metallireducens GS-15  Bacteria  normal  0.871598  normal  0.318753 
 
 
-
 
NC_013131  Caci_5370  extracellular solute-binding protein family 5  22.03 
 
 
629 aa  64.3  0.000000006  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.358498 
 
 
-
 
NC_010725  Mpop_0421  extracellular solute-binding protein family 5  26.95 
 
 
641 aa  63.9  0.000000008  Methylobacterium populi BJ001  Bacteria  normal  0.427516  normal 
 
 
-
 
NC_013172  Bfae_05550  ABC-type dipeptide transport system, periplasmic component  29.15 
 
 
550 aa  63.2  0.00000001  Brachybacterium faecium DSM 4810  Bacteria  normal  0.163393  n/a   
 
 
-
 
NC_007355  Mbar_A3566  dipeptide/oligopeptide-binding protein  24.6 
 
 
562 aa  63.5  0.00000001  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.672958  normal  0.0864129 
 
 
-
 
NC_013521  Sked_34930  ABC-type dipeptide transport system, periplasmic component  25.56 
 
 
563 aa  63.2  0.00000001  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.953561  normal 
 
 
-
 
NC_014150  Bmur_0586  extracellular solute-binding protein family 5  22.58 
 
 
544 aa  62.8  0.00000002  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1398  extracellular solute-binding protein family 5  25.45 
 
 
562 aa  62.8  0.00000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.986828  normal  0.969327 
 
 
-
 
NC_007947  Mfla_1483  extracellular solute-binding protein  23.73 
 
 
551 aa  62.4  0.00000002  Methylobacillus flagellatus KT  Bacteria  normal  0.228319  normal  0.152124 
 
 
-
 
NC_009485  BBta_1982  putative ABC transporter, periplasmic binding protein  25.41 
 
 
524 aa  62.4  0.00000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0990283  normal 
 
 
-
 
NC_010172  Mext_0342  extracellular solute-binding protein  26.91 
 
 
637 aa  62.8  0.00000002  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_1411  extracellular solute-binding protein  24.2 
 
 
559 aa  62.8  0.00000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_1832  extracellular solute-binding protein family 5  23.05 
 
 
587 aa  62.8  0.00000002  Cyanothece sp. PCC 7425  Bacteria  normal  0.315611  normal 
 
 
-
 
CP001509  ECD_01217  oligopeptide transporter subunit  24.86 
 
 
543 aa  62.4  0.00000003  Escherichia coli BL21(DE3)  Bacteria  normal  0.584763  n/a   
 
 
-
 
NC_002936  DET1494  peptide ABC transporter, periplasmic peptide-binding protein  21.09 
 
 
543 aa  62  0.00000003  Dehalococcoides ethenogenes 195  Bacteria  normal  0.0931394  n/a   
 
 
-
 
NC_011989  Avi_3874  ABC transporter substrate binding protein (oligopeptide)  24.8 
 
 
585 aa  62  0.00000003  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011366  Rleg2_5780  extracellular solute-binding protein family 5  23.76 
 
 
548 aa  62  0.00000003  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0222518  normal  0.0795178 
 
 
-
 
NC_012917  PC1_1984  extracellular solute-binding protein family 5  26.33 
 
 
556 aa  62  0.00000003  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_1391  oligopeptide ABC transporter, periplasmic oligopeptide-binding protein  24.86 
 
 
543 aa  62.4  0.00000003  Escherichia coli E24377A  Bacteria  normal  0.768286  n/a   
 
 
-
 
NC_009800  EcHS_A1352  oligopeptide ABC transporter, periplasmic oligopeptide-binding protein  24.86 
 
 
543 aa  62.4  0.00000003  Escherichia coli HS  Bacteria  normal  0.0153639  n/a   
 
 
-
 
NC_011981  Avi_7214  ABC transporter substrate binding protein (oligopeptide)  25.39 
 
 
532 aa  62  0.00000003  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_1897  oligopeptide ABC transporter, periplasmic oligopeptide-binding protein  24.86 
 
 
558 aa  62.4  0.00000003  Escherichia coli SMS-3-5  Bacteria  normal  0.340522  normal  0.197408 
 
 
-
 
NC_012892  B21_01227  hypothetical protein  24.86 
 
 
543 aa  62.4  0.00000003  Escherichia coli BL21  Bacteria  normal  0.595865  n/a   
 
 
-
 
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